Diff of the two buildlogs: -- --- b1/build.log 2021-02-10 00:26:43.785467504 +0000 +++ b2/build.log 2021-02-10 00:28:15.282560972 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Feb 9 12:25:29 -12 2021 -I: pbuilder-time-stamp: 1612916729 +I: Current time: Tue Mar 15 20:49:51 +14 2022 +I: pbuilder-time-stamp: 1647326991 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Aug 23 00:38:10 2018 -12 +gpgv: Signature made Fri Aug 24 02:38:10 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key @@ -27,136 +27,170 @@ dpkg-source: info: unpacking bppsuite_2.4.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7272/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/24236/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/24236/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/24236/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5de3b545f1ac4f1996db58cf209a09b2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='7272' - PS1='# ' - PS2='> ' + INVOCATION_ID=79138f6ba1584ffaa1d11d957ad47042 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=24236 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dovBq1IP2j/pbuilderrc_UFsp --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dovBq1IP2j/b1 --logfile b1/build.log bppsuite_2.4.1-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dovBq1IP2j/pbuilderrc_9nQe --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dovBq1IP2j/b2 --logfile b2/build.log bppsuite_2.4.1-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 4.19.0-14-amd64 #1 SMP Debian 4.19.171-2 (2021-01-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.9.0-0.bpo.5-amd64 #1 SMP Debian 5.9.15-1~bpo10+1 (2020-12-31) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 6 20:26 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/7272/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Mar 15 20:50 sh -> bash + lrwxrwxrwx 1 root root 4 Mar 13 04:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/24236/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -274,7 +308,7 @@ Get: 72 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 texinfo amd64 6.5.0.dfsg.1-4+b1 [1431 kB] -Fetched 38.6 MB in 1s (40.8 MB/s) +Fetched 38.6 MB in 1s (59.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -604,7 +638,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable @@ -659,7 +693,7 @@ -- Build files have been written to: /build/bppsuite-2.4.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/bppsuite-2.4.1' dh_auto_build - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks @@ -669,141 +703,141 @@ make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend +make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend -make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= -Scanning dependencies of target bppml -Scanning dependencies of target bppancestor -Scanning dependencies of target bpppars -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend +make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake --color= +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend Scanning dependencies of target bppseqman +Scanning dependencies of target bpppars +Scanning dependencies of target bppmixedlikelihoods Scanning dependencies of target bpptreedraw -Scanning dependencies of target bppseqgen make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -Scanning dependencies of target bppmixedlikelihoods -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +Scanning dependencies of target bppml +make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build +Scanning dependencies of target bppalnscore +Scanning dependencies of target bppancestor +Scanning dependencies of target bppdist Scanning dependencies of target bppconsense +Scanning dependencies of target bppseqgen +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build -Scanning dependencies of target bppreroot -Scanning dependencies of target bppdist make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -Scanning dependencies of target bpppopstats -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build -[ 2%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -Scanning dependencies of target bppalnscore -[ 5%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +Scanning dependencies of target bpppopstats make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPars.cpp +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +Scanning dependencies of target bppreroot +make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppML.cpp make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make 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bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake --color= -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAncestor.cpp -[ 21%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp -[ 23%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppDist.cpp -[ 26%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppConsense.cpp -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build Scanning dependencies of target info -[ 28%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPopStats.cpp -make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build -[ 31%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build Scanning dependencies of target man make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ 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object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o +[ 15%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAncestor.cpp +[ 18%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppDist.cpp make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 23%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o +[ 23%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 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CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPopStats.cpp [ 34%] Generating info page cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc && /usr/bin/makeinfo --no-split -o /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc/bppsuite.info /build/bppsuite-2.4.1/doc/bppsuite.texi +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppReRoot.cpp [ 36%] Compressing manpage bppalnscore.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppalnscore.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppalnscore.1.gz -[ 39%] Compressing manpage bppancestor.1 -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppancestor.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppancestor.1.gz -[ 42%] Compressing manpage bppconsense.1 +[ 39%] Compressing manpage bppconsense.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppconsense.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppconsense.1.gz +[ 42%] Compressing manpage bppancestor.1 +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppancestor.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppancestor.1.gz [ 44%] Compressing manpage bppdist.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppdist.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppdist.1.gz [ 47%] Compressing manpage bppmixedlikelihoods.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppmixedlikelihoods.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppmixedlikelihoods.1.gz [ 50%] Compressing manpage bppml.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppml.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppml.1.gz -[ 52%] Compressing manpage bpppopstats.1 -[ 55%] Compressing manpage bpppars.1 +[ 52%] Compressing manpage bpppars.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppars.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpppars.1.gz +[ 55%] Compressing manpage bpppopstats.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppopstats.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpppopstats.1.gz [ 57%] Compressing manpage bppreroot.1 cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppreroot.1 > /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppreroot.1.gz @@ -829,20 +863,20 @@ /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 73%] Built target bppconsense -[ 76%] Linking CXX executable bpptreedraw +[ 76%] Linking CXX executable bppseqman +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 76%] Built target bppseqman +[ 78%] Linking CXX executable bpptreedraw cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 76%] Built target bpptreedraw -[ 78%] Linking CXX executable bppseqman -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +[ 78%] Built target bpptreedraw [ 81%] Linking CXX executable bppreroot cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 81%] Built target bppseqman -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 81%] Built target bppreroot [ 84%] Linking CXX executable bpppars cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 @@ -854,16 +888,16 @@ /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 86%] Built target bppdist -[ 89%] Linking CXX executable bppancestor -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 89%] Built target bppancestor -[ 92%] Linking CXX executable bppseqgen +[ 89%] Linking CXX executable bppseqgen cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 92%] Built target bppseqgen +[ 89%] Built target bppseqgen +[ 92%] Linking CXX executable bppancestor +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 92%] Built target bppancestor [ 94%] Linking CXX executable bppmixedlikelihoods cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 @@ -872,12 +906,12 @@ [ 97%] Linking CXX executable bppml cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 97%] Built target bppml [100%] Linking CXX executable bpppopstats cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[100%] Built target bppml -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' [100%] Built target bpppopstats make[2]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 @@ -889,7 +923,7 @@ dh_testroot dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks @@ -902,6 +936,8 @@ make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend @@ -910,116 +946,114 @@ make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build +make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'doc/CMakeFiles/info.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqman.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpptreedraw.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppml.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqman.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppdist.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpptreedraw.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppars.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqgen.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppopstats.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppancestor.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppdist.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppml.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppconsense.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppconsense.dir/build'. -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppreroot.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 5%] Built target info +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqgen.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppopstats.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppancestor.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppalnscore.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 5%] Built target info -[ 10%] Built target bpptreedraw -[ 15%] Built target bppseqman -[ 21%] Built target bppdist +[ 10%] Built target bppmixedlikelihoods +[ 15%] Built target bppml +[ 23%] Built target bppseqman [ 26%] Built target bpppars -[ 31%] Built target bppmixedlikelihoods -[ 36%] Built target bppancestor -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppreroot.dir/build'. -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 31%] Built target bpptreedraw +[ 36%] Built target bpppopstats +[ 42%] Built target bppdist +[ 47%] Built target bppreroot +[ 52%] Built target bppconsense +[ 57%] Built target bppseqgen make[3]: Entering directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'man/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 42%] Built target bppseqgen -[ 47%] Built target bppml -[ 52%] Built target bppconsense -[ 57%] Built target bpppopstats -[ 63%] Built target bppalnscore -[ 68%] Built target bppreroot +[ 63%] Built target bppancestor +[ 68%] Built target bppalnscore [100%] Built target man make[2]: Leaving directory '/build/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 @@ -1078,8 +1112,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-1_amd64.deb'. dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-1_amd64.deb'. +dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-1_amd64.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bppsuite_2.4.1-1_amd64.changes @@ -1087,12 +1121,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/24236/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/24236/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7272 and its subdirectories -I: Current time: Tue Feb 9 12:26:43 -12 2021 -I: pbuilder-time-stamp: 1612916803 +I: removing directory /srv/workspace/pbuilder/24236 and its subdirectories +I: Current time: Tue Mar 15 20:51:18 +14 2022 +I: pbuilder-time-stamp: 1647327078