Diff of the two buildlogs: -- --- b1/build.log 2021-07-27 22:09:33.283409252 +0000 +++ b2/build.log 2021-07-27 22:14:49.783479862 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 27 10:02:42 -12 2021 -I: pbuilder-time-stamp: 1627423362 +I: Current time: Tue Aug 30 18:32:36 +14 2022 +I: pbuilder-time-stamp: 1661833956 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Jul 26 01:37:24 2018 -12 +gpgv: Signature made Fri Jul 27 03:37:24 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -27,136 +27,170 @@ dpkg-source: info: unpacking freecontact_1.0.21-7.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23987/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/54298/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/54298/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/54298/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5292ade3a6d84619a7dbd0c6b9bb4a82' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23987' - PS1='# ' - PS2='> ' + INVOCATION_ID=12437f8380d945fbbe8b187bf199c244 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=54298 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.5vrITONlzi/pbuilderrc_vUg4 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.5vrITONlzi/b1 --logfile b1/build.log freecontact_1.0.21-7.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.5vrITONlzi/pbuilderrc_DhiC --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.5vrITONlzi/b2 --logfile b2/build.log freecontact_1.0.21-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 20 20:24 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/23987/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 30 18:32 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 24 04:46 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/54298/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +322,7 @@ Get: 70 http://deb.debian.org/debian buster/main amd64 libxerces-c3.2 amd64 3.2.2+debian-1+deb10u1 [886 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libxerces-c-dev amd64 3.2.2+debian-1+deb10u1 [1697 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 xsdcxx amd64 4.0.0-8 [1836 kB] -Fetched 86.5 MB in 1s (58.4 MB/s) +Fetched 86.5 MB in 1s (73.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -605,7 +639,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package freecontact dpkg-buildpackage: info: source version 1.0.21-7 dpkg-buildpackage: info: source distribution unstable @@ -805,7 +839,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 600f12:7000800:9eb82203:78bfbff +checking for x86 cpuid 0x00000001 output... 600f12:800:9eb82203:78bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -991,7 +1025,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 600f12:8000800:9eb82203:78bfbff +checking for x86 cpuid 0x00000001 output... 600f12:1000800:9eb82203:78bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -1150,14 +1184,14 @@ make[2]: Leaving directory '/build/freecontact-1.0.21/lib' make[1]: Leaving directory '/build/freecontact-1.0.21' dh_auto_build - make -j15 + make -j16 make[1]: Entering directory '/build/freecontact-1.0.21' Making all in lib make[2]: Entering directory '/build/freecontact-1.0.21/lib' make all-am make[3]: Entering directory '/build/freecontact-1.0.21/lib' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp -/bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp +/bin/sh ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 libtool: compile: gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o libtool: compile: gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c glassofast-real.f90 -o libfreecontact_la-glassofast-real.o >/dev/null 2>&1 @@ -1232,7 +1266,7 @@ ali_t& ali_t::push(const std::vector& __al) throw (alilen_error) ^~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -o libfreecontact_la-freecontact.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath -lblas -llapack +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lquadmath -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -fopenmp -pthread -g -O2 -fstack-protector-strong -pthread -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfreecontact.so.0" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so.0") libtool: link: (cd ".libs" && rm -f "libfreecontact.so" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so") @@ -1633,66 +1667,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequence (::std::auto_ptr< sequence_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > p); @@ -1704,42 +1678,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - translationData (::std::auto_ptr< translationData_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - BiosequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); @@ -1751,18 +1689,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > p); @@ -1774,18 +1700,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > p); @@ -1797,30 +1711,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); @@ -1843,18 +1733,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); @@ -1910,30 +1788,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - len (::std::auto_ptr< len_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > p); @@ -1956,18 +1810,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignment_type > p); @@ -1979,54 +1821,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > p); @@ -2071,42 +1865,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - bases (::std::auto_ptr< bases_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); @@ -2118,18 +1876,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type >); @@ -2141,42 +1887,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceReference (::std::auto_ptr< sequenceReference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceName (::std::auto_ptr< sequenceName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); @@ -2232,66 +1942,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - genomeBuild (::std::auto_ptr< genomeBuild_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - chromosome (::std::auto_ptr< chromosome_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] dataReference (::std::auto_ptr< dataReference_type > p); @@ -2336,11 +1986,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedDirection (::std::auto_ptr< reversedDirection_type > p); - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); @@ -2385,13 +2030,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); @@ -2656,18 +2294,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] outside (::std::auto_ptr< outside_type > p); @@ -2679,18 +2305,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - className (::std::auto_ptr< className_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > p); @@ -2702,18 +2316,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - properties (::std::auto_ptr< properties_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); @@ -2725,90 +2327,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceName (::std::auto_ptr< occurrenceName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); @@ -2820,30 +2338,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - frame (::std::auto_ptr< frame_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); @@ -2855,18 +2349,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignment_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > p); @@ -2922,11 +2404,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequence (::std::auto_ptr< sequence_type > p); - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] dbVersion (::std::auto_ptr< dbVersion_type > p); @@ -2938,13 +2415,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); @@ -2967,18 +2437,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); @@ -3001,18 +2459,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); @@ -3024,18 +2470,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); @@ -3047,66 +2481,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - translationData (::std::auto_ptr< translationData_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - BiosequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - referenceSequence (::std::auto_ptr< referenceSequence_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); @@ -3118,18 +2492,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - FeatureRecord (::std::auto_ptr< referenceSequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] entryUri (::std::auto_ptr< entryUri_type > p); @@ -3174,11 +2536,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - predicted (::std::auto_ptr< predicted_type > p); - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ontologyUri (::std::auto_ptr< ontologyUri_type > p); @@ -3322,25 +2679,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - experimental (::std::auto_ptr< experimental_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); @@ -3385,18 +2723,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); @@ -3408,27 +2734,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - MethodResult (::std::auto_ptr< method_type >); - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3436,13 +2745,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); @@ -3454,18 +2756,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); @@ -3477,18 +2767,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); @@ -3500,18 +2778,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); @@ -3523,426 +2789,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - Result (::std::auto_ptr< methodIdRef_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dataReference (::std::auto_ptr< dataReference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reliability (::std::auto_ptr< reliability_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - len (::std::auto_ptr< len_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - index (::std::auto_ptr< index_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - unit (::std::auto_ptr< unit_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - value (::std::auto_ptr< value_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - bases (::std::auto_ptr< bases_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); @@ -3954,90 +2800,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); @@ -4104,114 +2866,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceReference (::std::auto_ptr< sequenceReference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceName (::std::auto_ptr< sequenceName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - genomeBuild (::std::auto_ptr< genomeBuild_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - chromosome (::std::auto_ptr< chromosome_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); @@ -4223,18 +2877,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); @@ -4246,18 +2888,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); @@ -4368,90 +2998,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPoint (::std::auto_ptr< nextPoint_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPartition (::std::auto_ptr< nextPartition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePoint (::std::auto_ptr< samePoint_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePartition (::std::auto_ptr< samePartition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - outside (::std::auto_ptr< outside_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - correspondance (::std::auto_ptr< correspondance_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedDirection (::std::auto_ptr< reversedDirection_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); @@ -4496,18 +3042,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); @@ -4563,18 +3097,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); @@ -4608,24 +3130,12 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > p); - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here @@ -4686,18 +3196,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - geneticCode (::std::auto_ptr< geneticCode_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); @@ -4713,11 +3211,6 @@ BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > p); - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4725,13 +3218,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); @@ -4743,18 +3229,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); @@ -4788,42 +3262,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbName (::std::auto_ptr< dbName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbUri (::std::auto_ptr< dbUri_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbVersion (::std::auto_ptr< dbVersion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); @@ -4846,42 +3284,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localIdRef (::std::auto_ptr< localIdRef_type > p); @@ -4893,198 +3295,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryUri (::std::auto_ptr< entryUri_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryVersion (::std::auto_ptr< entryVersion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyName (::std::auto_ptr< ontologyName_type > p); - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyUri (::std::auto_ptr< ontologyUri_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - className (::std::auto_ptr< className_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - properties (::std::auto_ptr< properties_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - conceptUri (::std::auto_ptr< conceptUri_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - term (::std::auto_ptr< term_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequence (::std::auto_ptr< sequence_type > x) ^~~~~~~~ @@ -5095,30 +3305,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesName (::std::auto_ptr< speciesName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesNote (::std::auto_ptr< speciesNote_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > x) ^~~~~~~~ @@ -5129,42 +3315,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequence (::std::auto_ptr< supersequence_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequenceName (::std::auto_ptr< supersequenceName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > x) ^~~~~~~~ @@ -5175,42 +3325,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > x) ^~~~~~~~ @@ -5231,66 +3345,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - uri (::std::auto_ptr< uri_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - version (::std::auto_ptr< version_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] translationData (::std::auto_ptr< translationData_type > x) ^~~~~~~~ @@ -5301,100 +3355,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > x) ^~~~~~~~ @@ -5495,76 +3465,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceName (::std::auto_ptr< occurrenceName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) ^~~~~~~~ @@ -5675,18 +3585,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - frame (::std::auto_ptr< frame_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > x) ^~~~~~~~ @@ -5777,18 +3675,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > x) ^~~~~~~~ @@ -5799,18 +3685,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignment_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > x) ^~~~~~~~ @@ -5861,6 +3735,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequence (::std::auto_ptr< sequence_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > x) ^~~~~~~~ @@ -5873,9 +3759,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - referenceSequence (::std::auto_ptr< referenceSequence_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5883,39 +3769,45 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > x) +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > x) +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > x) - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5923,39 +3815,45 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dataReference (::std::auto_ptr< dataReference_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + translationData (::std::auto_ptr< translationData_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reliability (::std::auto_ptr< reliability_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + BiosequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5963,9 +3861,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - index (::std::auto_ptr< index_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5975,9 +3873,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - FeatureRecord (::std::auto_ptr< referenceSequence_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5985,19 +3883,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - unit (::std::auto_ptr< unit_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6005,29 +3905,33 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - value (::std::auto_ptr< value_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dataReference (::std::auto_ptr< dataReference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6035,9 +3939,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6045,9 +3949,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reliability (::std::auto_ptr< reliability_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6055,39 +3959,45 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + len (::std::auto_ptr< len_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6095,9 +4005,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + index (::std::auto_ptr< index_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6105,21 +4015,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - predicted (::std::auto_ptr< predicted_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6129,9 +4041,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - experimental (::std::auto_ptr< experimental_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6139,31 +4051,33 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + unit (::std::auto_ptr< unit_type > x) + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > x) - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6171,9 +4085,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6181,9 +4095,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6191,9 +4105,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + value (::std::auto_ptr< value_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6201,21 +4115,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + bases (::std::auto_ptr< bases_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6225,9 +4141,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - MethodResult (::std::auto_ptr< method_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6235,9 +4151,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6245,33 +4161,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceReference (::std::auto_ptr< sequenceReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceName (::std::auto_ptr< sequenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6281,9 +4199,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - Result (::std::auto_ptr< methodIdRef_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6291,14 +4209,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > x) - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - missing (::std::auto_ptr< missing_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6306,30 +4219,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + genomeBuild (::std::auto_ptr< genomeBuild_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + chromosome (::std::auto_ptr< chromosome_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6339,9 +4257,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6349,9 +4267,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPoint (::std::auto_ptr< nextPoint_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6359,59 +4277,63 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignedSequence (::std::auto_ptr< alignedSequence_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignedSequence_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); +BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedDirection (::std::auto_ptr< reversedDirection_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6419,9 +4341,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPartition (::std::auto_ptr< nextPartition_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6429,9 +4351,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePoint (::std::auto_ptr< samePoint_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6439,21 +4361,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceReference (::std::auto_ptr< sequenceReference_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePartition (::std::auto_ptr< samePartition_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6461,57 +4381,49 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceName (::std::auto_ptr< sequenceName_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - genomeBuild (::std::auto_ptr< genomeBuild_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - chromosome (::std::auto_ptr< chromosome_type > p); +BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - outside (::std::auto_ptr< outside_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6519,23 +4431,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dataReference (::std::auto_ptr< dataReference_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + className (::std::auto_ptr< className_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6543,35 +4475,55 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + properties (::std::auto_ptr< properties_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); +BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPoint (::std::auto_ptr< nextPoint_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPartition (::std::auto_ptr< nextPartition_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6579,47 +4531,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > p); +BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePoint (::std::auto_ptr< samePoint_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePartition (::std::auto_ptr< samePartition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation (::std::auto_ptr< feature_type >); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reliability (::std::auto_ptr< reliability_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6629,9 +4577,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceName (::std::auto_ptr< occurrenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6639,6 +4587,40 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + outside (::std::auto_ptr< outside_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > x) ^~~~~~~~ @@ -6649,6 +4631,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + frame (::std::auto_ptr< frame_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > x) ^~~~~~~~ @@ -6659,6 +4665,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignment_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) ^~~~~~~~ @@ -6711,9 +4729,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + referenceSequence (::std::auto_ptr< referenceSequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6721,47 +4739,41 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - index (::std::auto_ptr< index_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbName (::std::auto_ptr< dbName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - unit (::std::auto_ptr< unit_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbUri (::std::auto_ptr< dbUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbVersion (::std::auto_ptr< dbVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + FeatureRecord (::std::auto_ptr< referenceSequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6769,9 +4781,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbName (::std::auto_ptr< dbName_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6781,9 +4793,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - value (::std::auto_ptr< value_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + predicted (::std::auto_ptr< predicted_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6793,9 +4805,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + experimental (::std::auto_ptr< experimental_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6803,9 +4815,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbUri (::std::auto_ptr< dbUri_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6815,9 +4827,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6825,9 +4837,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbVersion (::std::auto_ptr< dbVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6837,9 +4849,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + MethodResult (::std::auto_ptr< method_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6847,21 +4859,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6869,31 +4879,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + Result (::std::auto_ptr< methodIdRef_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6903,9 +4925,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6915,9 +4937,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6925,9 +4947,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryUri (::std::auto_ptr< entryUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6935,33 +4957,31 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - code (::std::auto_ptr< code_type > p); - ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryVersion (::std::auto_ptr< entryVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6969,47 +4989,41 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - aminoacid (::std::auto_ptr< aminoacid_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyName (::std::auto_ptr< ontologyName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyUri (::std::auto_ptr< ontologyUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dataReference (::std::auto_ptr< dataReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7019,9 +5033,12 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7029,23 +5046,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > p); - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reliability (::std::auto_ptr< reliability_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7055,9 +5067,12 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + conceptUri (::std::auto_ptr< conceptUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7065,33 +5080,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > p); - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + term (::std::auto_ptr< term_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesName (::std::auto_ptr< speciesName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7099,9 +5107,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesNote (::std::auto_ptr< speciesNote_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7109,9 +5117,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryUri (::std::auto_ptr< entryUri_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7119,9 +5127,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryVersion (::std::auto_ptr< entryVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequence (::std::auto_ptr< supersequence_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7129,33 +5137,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequenceName (::std::auto_ptr< supersequenceName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > p); - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7163,57 +5167,53 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + index (::std::auto_ptr< index_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyName (::std::auto_ptr< ontologyName_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + uri (::std::auto_ptr< uri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7223,9 +5223,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + unit (::std::auto_ptr< unit_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7235,9 +5235,12 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + version (::std::auto_ptr< version_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7245,9 +5248,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyUri (::std::auto_ptr< ontologyUri_type > x) - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7255,9 +5255,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7265,9 +5265,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7275,9 +5275,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - conceptUri (::std::auto_ptr< conceptUri_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7287,9 +5287,12 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7297,35 +5300,40 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + value (::std::auto_ptr< value_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPoint (::std::auto_ptr< nextPoint_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7333,11 +5341,31 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPartition (::std::auto_ptr< nextPartition_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7345,22 +5373,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePoint (::std::auto_ptr< samePoint_type > p); +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7371,9 +5399,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePartition (::std::auto_ptr< samePartition_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7383,9 +5411,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - outside (::std::auto_ptr< outside_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7393,157 +5421,191 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - term (::std::auto_ptr< term_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesName (::std::auto_ptr< speciesName_type > x) +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesNote (::std::auto_ptr< speciesNote_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequence (::std::auto_ptr< supersequence_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequenceName (::std::auto_ptr< supersequenceName_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation1 (::std::auto_ptr< feature_type >); - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > x) +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPoint (::std::auto_ptr< nextPoint_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - uri (::std::auto_ptr< uri_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPartition (::std::auto_ptr< nextPartition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - correspondance (::std::auto_ptr< correspondance_type > p); +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePoint (::std::auto_ptr< samePoint_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePartition (::std::auto_ptr< samePartition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7553,9 +5615,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + outside (::std::auto_ptr< outside_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7563,9 +5625,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - version (::std::auto_ptr< version_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7573,9 +5635,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7583,9 +5645,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + missing (::std::auto_ptr< missing_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7593,33 +5655,31 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); +BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + correspondance (::std::auto_ptr< correspondance_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5569:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7627,33 +5687,31 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); +BioXSD-1.1_xsd.cxx:5593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignedSequence (::std::auto_ptr< alignedSequence_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5627:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7661,33 +5719,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5657:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceReference (::std::auto_ptr< sequenceReference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5687:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceName (::std::auto_ptr< sequenceName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7695,33 +5749,39 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > p); +BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + genomeBuild (::std::auto_ptr< genomeBuild_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + chromosome (::std::auto_ptr< chromosome_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5807:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7729,33 +5789,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5867:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7775,15 +5831,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localIdRef (::std::auto_ptr< localIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6117:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + code (::std::auto_ptr< code_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -7799,6 +5863,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6195:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + aminoacid (::std::auto_ptr< aminoacid_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6249:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7811,6 +5895,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6359:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7835,6 +5929,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6419:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7871,6 +5985,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6449:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7883,6 +6007,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6477:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7907,6 +6041,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6505:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7931,6 +6075,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7943,9 +6097,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6561:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7953,9 +6107,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6589:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7963,30 +6117,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - flat (::std::auto_ptr< flat_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - FcAlignment (::std::auto_ptr< flat_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - missing (::std::auto_ptr< missing_type > x) +BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7995,9 +6127,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6647:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8005,21 +6137,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequence (::std::auto_ptr< sequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8027,21 +6149,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8049,32 +6161,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8082,32 +6183,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8115,21 +6205,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > x) + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8137,10 +6227,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + translationData (::std::auto_ptr< translationData_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8148,14 +6239,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -8171,6 +6261,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8183,6 +6285,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + BiosequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8190,6 +6307,13 @@ ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here @@ -8207,6 +6331,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8231,21 +6375,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5569:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8253,19 +6385,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignedSequence (::std::auto_ptr< alignedSequence_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5627:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8273,9 +6407,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5657:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceReference (::std::auto_ptr< sequenceReference_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8319,6 +6453,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localIdRef (::std::auto_ptr< localIdRef_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8343,76 +6487,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5687:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceName (::std::auto_ptr< sequenceName_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - genomeBuild (::std::auto_ptr< genomeBuild_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - chromosome (::std::auto_ptr< chromosome_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5807:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5867:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8449,6 +6523,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8473,6 +6559,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8485,13 +6583,27 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -8543,16 +6655,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8625,89 +6727,107 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6117:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - code (::std::auto_ptr< code_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6195:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - aminoacid (::std::auto_ptr< aminoacid_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + len (::std::auto_ptr< len_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6249:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6359:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6419:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6449:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - flat (::std::auto_ptr< flat_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8715,195 +6835,219 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6477:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + bases (::std::auto_ptr< bases_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6505:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6561:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > x) - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6589:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceReference (::std::auto_ptr< sequenceReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceName (::std::auto_ptr< sequenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6647:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + genomeBuild (::std::auto_ptr< genomeBuild_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + chromosome (::std::auto_ptr< chromosome_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedDirection (::std::auto_ptr< reversedDirection_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + className (::std::auto_ptr< className_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > x) - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + properties (::std::auto_ptr< properties_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localIdRef (::std::auto_ptr< localIdRef_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -8931,6 +7075,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8938,11 +7087,42 @@ ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceName (::std::auto_ptr< occurrenceName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8955,6 +7135,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8979,6 +7171,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9039,6 +7243,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + frame (::std::auto_ptr< frame_type > p); + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9051,6 +7260,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9063,6 +7279,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9111,6 +7339,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignment_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9123,6 +7363,54 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + referenceSequence (::std::auto_ptr< referenceSequence_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + FeatureRecord (::std::auto_ptr< referenceSequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + predicted (::std::auto_ptr< predicted_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + experimental (::std::auto_ptr< experimental_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9135,6 +7423,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + MethodResult (::std::auto_ptr< method_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9171,6 +7483,66 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + Result (::std::auto_ptr< methodIdRef_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9219,6 +7591,47 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dataReference (::std::auto_ptr< dataReference_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reliability (::std::auto_ptr< reliability_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9226,6 +7639,13 @@ ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here @@ -9267,16 +7687,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - FcAlignment (::std::auto_ptr< flat_type > flat) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9313,17 +7723,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9336,6 +7735,54 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + index (::std::auto_ptr< index_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + unit (::std::auto_ptr< unit_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9360,6 +7807,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9372,6 +7831,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + value (::std::auto_ptr< value_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9384,6 +7855,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9396,6 +7872,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9432,6 +7915,42 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9444,6 +7963,42 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9456,6 +8011,42 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -9468,8 +8059,34 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< flat_type > r ( +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -9478,6 +8095,66 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) ^~~~~~~~ @@ -9488,6 +8165,66 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPoint (::std::auto_ptr< nextPoint_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPartition (::std::auto_ptr< nextPartition_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePoint (::std::auto_ptr< samePoint_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePartition (::std::auto_ptr< samePartition_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + outside (::std::auto_ptr< outside_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:7630:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -9499,6 +8236,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + correspondance (::std::auto_ptr< correspondance_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41: freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > @@ -9510,10 +8259,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9664,10 +8414,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9675,10 +8426,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9686,10 +8438,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + geneticCode (::std::auto_ptr< geneticCode_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9697,10 +8450,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9708,10 +8462,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9719,10 +8474,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbName (::std::auto_ptr< dbName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9730,9 +8486,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbUri (::std::auto_ptr< dbUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9740,9 +8498,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbVersion (::std::auto_ptr< dbVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9750,9 +8510,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9760,9 +8522,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9770,9 +8534,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9780,9 +8546,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9790,10 +8558,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9801,10 +8570,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9812,10 +8582,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9823,10 +8594,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryUri (::std::auto_ptr< entryUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9834,10 +8606,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryVersion (::std::auto_ptr< entryVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9845,10 +8618,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9856,10 +8630,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyName (::std::auto_ptr< ontologyName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9867,9 +8642,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyUri (::std::auto_ptr< ontologyUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9877,20 +8654,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequence_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9898,10 +8676,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9909,9 +8688,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + conceptUri (::std::auto_ptr< conceptUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -9919,19 +8700,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequence_type > r ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + term (::std::auto_ptr< term_type > p); + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7658:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7658:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9949,6 +8732,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesName (::std::auto_ptr< speciesName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:7686:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -9959,6 +8754,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesNote (::std::auto_ptr< speciesNote_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:7697:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< reference_type > r ( ^~~~~~~~ @@ -9979,6 +8786,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequence (::std::auto_ptr< supersequence_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:7725:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< name_type > r ( ^~~~~~~~ @@ -9989,6 +8820,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequenceName (::std::auto_ptr< supersequenceName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:7742:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -9999,9 +8854,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:7753:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< note_type > r ( ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10009,6 +8881,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:7770:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -10049,6 +8928,126 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + uri (::std::auto_ptr< uri_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + version (::std::auto_ptr< version_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:7880:43: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) @@ -10151,6 +9150,198 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + missing (::std::auto_ptr< missing_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignedSequence (::std::auto_ptr< alignedSequence_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignedSequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceReference (::std::auto_ptr< sequenceReference_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceName (::std::auto_ptr< sequenceName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + genomeBuild (::std::auto_ptr< genomeBuild_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + chromosome (::std::auto_ptr< chromosome_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:8924:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -10162,6 +9353,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:8935:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< localAlignmentPosition_type > r ( ^~~~~~~~ @@ -10172,6 +9375,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:8952:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -10222,6 +9437,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation (::std::auto_ptr< feature_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:9019:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceName_type > r ( ^~~~~~~~ @@ -10452,10 +9679,171 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + code (::std::auto_ptr< code_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + aminoacid (::std::auto_ptr< aminoacid_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10463,6 +9851,25 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:9621:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< name_type > r ( ^~~~~~~~ @@ -10493,6 +9900,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation1 (::std::auto_ptr< feature_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:9663:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -10536,9 +9955,6 @@ BioXSD-1.1_xsd.cxx:9716:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ -freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10546,13 +9962,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:9725:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< classConcept_type > r ( ^~~~~~~~ @@ -10583,30 +9992,31 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -10616,6 +10026,113 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:9877:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< specificFeatureName_type > r ( ^~~~~~~~ @@ -10666,6 +10183,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -10686,6 +10214,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localIdRef (::std::auto_ptr< localIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -10696,6 +10236,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:9980:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< note_type > r ( ^~~~~~~~ @@ -10706,6 +10257,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< association_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( @@ -10739,16 +10300,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< association_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:130:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > @@ -10810,29 +10361,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -10842,64 +10382,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< appliesToWholeSequence_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -10907,19 +10413,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< appliesToWholeSequence_type > r ( +BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< position_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -10928,7 +10423,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -10938,19 +10433,20 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< position_type > r ( - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< occurrenceEntryReference_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10958,13 +10454,14 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< occurrenceEntryReference_type > r ( - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -10998,6 +10495,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< occurrenceNote_type > r ( ^~~~~~~~ @@ -11008,6 +10516,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:10260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -11028,6 +10547,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -11038,11 +10568,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< score_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here @@ -11068,6 +10609,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< frame_type > r ( ^~~~~~~~ @@ -11118,6 +10669,83 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + flat (::std::auto_ptr< flat_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + FcAlignment (::std::auto_ptr< flat_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) @@ -11129,76 +10757,133 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< referenceSequence_type > r ( - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< annotation_type > r ( - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< referenceSequence_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< annotation_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -11296,6 +10981,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -11337,6 +11032,48 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + flat (::std::auto_ptr< flat_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -11946,6 +11683,27 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + FcAlignment (::std::auto_ptr< flat_type > flat) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -12048,464 +11806,284 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< relationName_type > r ( +freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< flat_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17660:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17669:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< relationConcept_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17685:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17694:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< associatedConcept_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17710:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17719:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< associatedDatabaseEntry_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17735:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17744:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< associatedDatabase_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17760:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17769:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< associatedFeature_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17938:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< canonicalVariant_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< variant_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17980:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17991:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< missing_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18008:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18017:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< score_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18033:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18044:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< position_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< alignmentOfReference_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18161:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18172:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< alignedSequence_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::referenceSequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18292:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18303:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceRecord_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18320:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18331:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceReference_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18348:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18359:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceName_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18387:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< species_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18404:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18415:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< genomeBuild_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18432:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18443:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< chromosome_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18460:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< subsequencePosition_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18488:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18499:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< variantAccession_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18516:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18527:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< variantNote_type > r ( - ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:18590:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation (::std::auto_ptr< feature_type > feature) - ^~~~~~~~ +freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12515,8 +12093,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18649:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< feature_type > r ( +BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< relationName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12525,17 +12103,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18667:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< condensedReferences_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18680:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:17660:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12545,8 +12113,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18689:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< occurrence_type > r ( +BioXSD-1.1_xsd.cxx:17669:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< relationConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12555,69 +12123,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::blockWithOccurrenceReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18801:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< database_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18812:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ontology_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18823:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< semanticConcept_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< method_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18845:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< scoreType_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18856:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< annotation_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignmentOfReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:19177:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:17685:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12627,8 +12133,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19186:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< gap_type > r ( +BioXSD-1.1_xsd.cxx:17694:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< associatedConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12637,7 +12143,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19202:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:17710:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12647,8 +12153,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19211:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< insert_type > r ( +BioXSD-1.1_xsd.cxx:17719:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< associatedDatabaseEntry_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12657,7 +12163,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19227:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:17735:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12667,8 +12173,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19236:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< frameshift_type > r ( +BioXSD-1.1_xsd.cxx:17744:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< associatedDatabase_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12677,7 +12183,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19252:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:17760:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12687,8 +12193,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19261:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceScore_type > r ( +BioXSD-1.1_xsd.cxx:17769:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< associatedFeature_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12697,139 +12203,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:19360:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19371:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< method_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19388:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19399:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ontology_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19416:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19427:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< database_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19444:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19455:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< scoreType_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:19944:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation1 (::std::auto_ptr< feature_type > feature) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:19992:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20003:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< feature_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20021:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< condensedReferences_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20035:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< occurrence_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12890,17 +12263,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:20290:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12913,21 +12275,15 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20301:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< method_type > r ( - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12935,6 +12291,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12947,58 +12310,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20318:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20329:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< methodIdRef_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20346:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20357:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ontology_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20374:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20385:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ontologyIdRef_type > r ( +BioXSD-1.1_xsd.cxx:17938:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< canonicalVariant_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13007,7 +12320,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20402:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13017,9 +12330,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20413:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< database_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< variant_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13027,7 +12340,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20430:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:17980:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13037,8 +12350,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20441:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< databaseIdRef_type > r ( +BioXSD-1.1_xsd.cxx:17991:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< missing_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13047,7 +12360,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20458:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:18008:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13057,9 +12370,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20469:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< scoreType_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18017:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< score_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13067,7 +12380,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20486:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:18033:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13077,8 +12390,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20497:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< scoreTypeIdRef_type > r ( +BioXSD-1.1_xsd.cxx:18044:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< position_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13087,10 +12400,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::occurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:20598:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< association_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13146,9 +12459,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:20702:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< alignmentOfReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13157,17 +12470,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20713:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< relationName_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20730:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:18161:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13177,9 +12480,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20739:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< relationConcept_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18172:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< alignedSequence_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13187,28 +12490,33 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20755:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20764:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< relationConceptIdRef_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20781:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< associatedFeatureOccurrence_type > r ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::referenceSequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18292:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13219,9 +12527,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + len (::std::auto_ptr< len_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -13229,10 +12537,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::associatedFeatureOccurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:20868:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18303:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceRecord_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13240,9 +12547,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20877:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< score_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18320:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13250,27 +12557,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:18331:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceReference_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - len (::std::auto_ptr< len_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:18348:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -13286,6 +12589,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18359:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceName_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13298,6 +12611,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13322,6 +12645,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18387:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< species_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13334,6 +12667,96 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18404:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18415:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< genomeBuild_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18432:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18443:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< chromosome_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18460:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< subsequencePosition_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18488:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18499:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< variantAccession_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18516:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13478,6 +12901,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18527:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< variantNote_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13490,6 +12923,68 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:18590:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation (::std::auto_ptr< feature_type > feature) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18649:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< feature_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18667:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< condensedReferences_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18680:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18689:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< occurrence_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13502,6 +12997,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::blockWithOccurrenceReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18801:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< database_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13514,6 +13020,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18812:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ontology_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13526,6 +13042,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18823:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< semanticConcept_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13538,6 +13064,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< method_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18845:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< scoreType_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13550,6 +13096,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18856:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< annotation_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13646,6 +13202,87 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignmentOfReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:19177:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19186:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< gap_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19202:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19211:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< insert_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19227:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19236:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< frameshift_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19252:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19261:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceScore_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13658,6 +13295,87 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:19360:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19371:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< method_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19388:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19399:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ontology_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19416:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19427:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< database_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19444:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19455:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< scoreType_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13826,6 +13544,28 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:19944:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation1 (::std::auto_ptr< feature_type > feature) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:19992:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13838,6 +13578,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20003:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< feature_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13874,6 +13624,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20021:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< condensedReferences_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20035:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< occurrence_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14102,6 +13872,77 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:20290:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20301:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< method_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20318:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20329:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< methodIdRef_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20346:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20357:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ontology_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20374:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14114,6 +13955,56 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20385:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ontologyIdRef_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20402:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20413:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< database_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20430:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20441:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< databaseIdRef_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14126,6 +14017,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20458:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14138,6 +14039,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20469:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< scoreType_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14150,6 +14061,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20486:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14162,6 +14076,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14174,6 +14095,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20497:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< scoreTypeIdRef_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14186,6 +14117,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::occurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:20598:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< association_type > r ( + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14198,6 +14133,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14222,11 +14164,65 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:20702:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20713:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< relationName_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20730:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20739:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< relationConcept_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20755:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > p); ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20764:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< relationConceptIdRef_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -14234,6 +14230,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14258,6 +14261,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20781:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< associatedFeatureOccurrence_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14318,6 +14331,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::associatedFeatureOccurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:20868:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14330,6 +14354,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20877:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< score_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -15584,69 +15618,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - class LIBFREEC_API ali_t : public std::vector<__m128i> - ^ -In file included from freecontact.cpp:25: -../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ali_t& push(const std::vector& __al) throw (alilen_error); - ^~~~~ -../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - inline ali_t& push(const std::string& __l) throw (alilen_error) - ^~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - ^ -In file included from freecontact.cpp:25: -../lib/freecontact.h: At global scope: -../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) - ^~~~~ -freecontact.cpp: In function 'int main(int, char**)': -freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - auto_ptr ali_ifs_p; - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/container_hash/extensions.hpp:36, - from /usr/include/boost/container_hash/hash.hpp:760, - from /usr/include/boost/type_index/stl_type_index.hpp:43, - from /usr/include/boost/type_index.hpp:29, - from /usr/include/boost/any.hpp:20, - from /usr/include/boost/program_options/value_semantic.hpp:12, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/container_hash/extensions.hpp:36, - from /usr/include/boost/container_hash/hash.hpp:760, - from /usr/include/boost/type_index/stl_type_index.hpp:43, - from /usr/include/boost/type_index.hpp:29, - from /usr/include/boost/any.hpp:20, - from /usr/include/boost/program_options/value_semantic.hpp:12, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from _write_bioxsd.cpp:22: ../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] class LIBFREEC_API ali_t : public std::vector<__m128i> @@ -15981,7 +15952,70 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la +In file included from freecontact.cpp:25: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + class LIBFREEC_API ali_t : public std::vector<__m128i> + ^ +In file included from freecontact.cpp:25: +../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ali_t& push(const std::vector& __al) throw (alilen_error); + ^~~~~ +../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + inline ali_t& push(const std::string& __l) throw (alilen_error) + ^~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + ^ +In file included from freecontact.cpp:25: +../lib/freecontact.h: At global scope: +../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) + ^~~~~ +freecontact.cpp: In function 'int main(int, char**)': +freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + auto_ptr ali_ifs_p; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/container_hash/extensions.hpp:36, + from /usr/include/boost/container_hash/hash.hpp:760, + from /usr/include/boost/type_index/stl_type_index.hpp:43, + from /usr/include/boost/type_index.hpp:29, + from /usr/include/boost/any.hpp:20, + from /usr/include/boost/program_options/value_semantic.hpp:12, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/container_hash/extensions.hpp:36, + from /usr/include/boost/container_hash/hash.hpp:760, + from /usr/include/boost/type_index/stl_type_index.hpp:43, + from /usr/include/boost/type_index.hpp:29, + from /usr/include/boost/any.hpp:20, + from /usr/include/boost/program_options/value_semantic.hpp:12, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Entering directory '/build/freecontact-1.0.21' @@ -15989,7 +16023,7 @@ make[2]: Leaving directory '/build/freecontact-1.0.21' make[1]: Leaving directory '/build/freecontact-1.0.21' dh_auto_test - make -j15 check VERBOSE=1 + make -j16 check VERBOSE=1 make[1]: Entering directory '/build/freecontact-1.0.21' Making check in lib make[2]: Entering directory '/build/freecontact-1.0.21/lib' @@ -16034,7 +16068,7 @@ make[2]: Entering directory '/build/freecontact-1.0.21/lib' make[3]: Entering directory '/build/freecontact-1.0.21/lib' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) @@ -16051,7 +16085,7 @@ make[2]: Entering directory '/build/freecontact-1.0.21/src' make[3]: Entering directory '/build/freecontact-1.0.21/src' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/build/freecontact-1.0.21/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c freecontact '/build/freecontact-1.0.21/debian/tmp/usr/bin' libtool: warning: '../lib/libfreecontact.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/freecontact /build/freecontact-1.0.21/debian/tmp/usr/bin/freecontact /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' @@ -16138,11 +16172,11 @@ make[1]: Leaving directory '/build/freecontact-1.0.21' dh_md5sums dh_builddeb -dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-7_amd64.deb'. dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-7_amd64.deb'. -dpkg-deb: building package 'libfreecontact0v5-dbgsym' in '../libfreecontact0v5-dbgsym_1.0.21-7_amd64.deb'. -dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-7_amd64.deb'. dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-7_amd64.deb'. +dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-7_amd64.deb'. +dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-7_amd64.deb'. +dpkg-deb: building package 'libfreecontact0v5-dbgsym' in '../libfreecontact0v5-dbgsym_1.0.21-7_amd64.deb'. dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-7_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../freecontact_1.0.21-7_amd64.changes @@ -16150,12 +16184,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/54298/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/54298/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23987 and its subdirectories -I: Current time: Tue Jul 27 10:09:32 -12 2021 -I: pbuilder-time-stamp: 1627423772 +I: removing directory /srv/workspace/pbuilder/54298 and its subdirectories +I: Current time: Tue Aug 30 18:37:50 +14 2022 +I: pbuilder-time-stamp: 1661834270