Diff of the two buildlogs: -- --- b1/build.log 2021-04-04 09:45:04.090720271 +0000 +++ b2/build.log 2021-04-04 09:45:43.797162572 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 7 04:07:41 -12 2022 -I: pbuilder-time-stamp: 1651939661 +I: Current time: Sun Apr 4 23:45:05 +14 2021 +I: pbuilder-time-stamp: 1617529505 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Wed Jan 2 01:48:19 2019 -12 +gpgv: Signature made Thu Jan 3 03:48:19 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -29,136 +29,170 @@ dpkg-source: info: applying hardening.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13342/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4448/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4448/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4448/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a371569cda5a4018b769062e94740140' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13342' - PS1='# ' - PS2='> ' + INVOCATION_ID=a9f2c48f58cf4a028ff555b490679d14 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4448 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.SSmHxxe7nj/pbuilderrc_efIr --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.SSmHxxe7nj/b1 --logfile b1/build.log garlic_1.6-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.SSmHxxe7nj/pbuilderrc_U6yX --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.SSmHxxe7nj/b2 --logfile b2/build.log garlic_1.6-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.10.0-0.bpo.4-amd64 #1 SMP Debian 5.10.19-1~bpo10+1 (2021-03-13) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Apr 23 02:46 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/13342/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Apr 4 23:45 sh -> bash + lrwxrwxrwx 1 root root 4 Mar 21 22:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/4448/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -243,7 +277,7 @@ Get: 45 http://deb.debian.org/debian buster/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libx11-dev amd64 2:1.6.7-1+deb10u1 [824 kB] -Fetched 21.7 MB in 0s (69.6 MB/s) +Fetched 21.7 MB in 0s (54.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -454,7 +488,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/garlic-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/garlic-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package garlic dpkg-buildpackage: info: source version 1.6-3 dpkg-buildpackage: info: source distribution unstable @@ -476,7 +510,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/garlic-1.6' dh_auto_build -- CCOPT="-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security" - make -j16 "INSTALL=install --strip-program=true" "CCOPT=-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security" + make -j15 "INSTALL=install --strip-program=true" "CCOPT=-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security" make[2]: Entering directory '/build/garlic-1.6' gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security garlic.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security print_usage.c @@ -552,16 +586,16 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotate.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translation_shift.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security slab_shift.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_back_slab.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_front_slab.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security fading_shift.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_back_fading.c alloc_nearest.c: In function 'AllocateNearest_': alloc_nearest.c:70:32: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf (stderr, "A total of %d bytes required.\n", mem_size); ~^ ~~~~~~~~ %ld +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security slab_shift.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_back_slab.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_front_slab.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security fading_shift.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_back_fading.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_front_fading.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security key_release.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security refresh_pixmap.c @@ -639,10 +673,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_select.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security include.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chains.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_ranges.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_token.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_serials.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_names.c load.c: In function 'Load_': load.c:122:53: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf (runtimeSP->messageA, "Unable to open file %s!", tokenA); @@ -650,6 +680,10 @@ load.c:122:2: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 sprintf (runtimeSP->messageA, "Unable to open file %s!", tokenA); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_ranges.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_token.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_serials.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_names.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atom_names.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security exclude.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security skip_keyword.c @@ -682,8 +716,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_slab.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_fading.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security log.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_backbone.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security background.c execute_script.c: In function 'ExecuteScript_': execute_script.c:101:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1002 [-Wformat-overflow=] "Unable to open script %s!", tokenA); @@ -693,19 +725,19 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "Unable to open script %s!", tokenA); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_backbone.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security background.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security text_background.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security text_foreground.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security change_slab.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security change_fading.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_colors.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_old.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security font.c prepare_backbone.c: In function 'PrepareBackbone_': prepare_backbone.c:103:32: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf (stderr, "A total of %d bytes required.\n", mem_size); ~^ ~~~~~~~~ %ld -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security cpk.c log.c: In function 'Log_': log.c:130:57: warning: '%s' directive writing up to 1023 bytes into a region of size 1000 [-Wformat-overflow=] sprintf (runtimeSP->messageA, "Unable to open log file %s!", tokenA); @@ -713,6 +745,8 @@ log.c:130:2: note: 'sprintf' output between 26 and 1049 bytes into a destination of size 1024 sprintf (runtimeSP->messageA, "Unable to open log file %s!", tokenA); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security font.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security cpk.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security zebra.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chain.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_hyphob.c @@ -720,6 +754,13 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_backbone.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide_no_refresh.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security show_no_refresh.c +font.c: In function 'Font_': +font.c:87:38: warning: '%s' directive writing up to 1023 bytes into a region of size 1019 [-Wformat-overflow=] + sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA); + ^~ ~~~~~~ +font.c:87:2: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 + sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security backbone.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hybonds.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_hybonds.c @@ -727,18 +768,21 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security show_backbone.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide_backbone.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pdb_id.c +comm_backbone.c: In function 'CommandBackbone_': +comm_backbone.c:106:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1000 [-Wformat-overflow=] + "Backbone drawing style \"%s\" not available!", + ^~ + tokenA); + ~~~~~~ +comm_backbone.c:105:3: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 + sprintf (runtimeSP->messageA, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + "Backbone drawing style \"%s\" not available!", + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + tokenA); + ~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_plane.c -font.c: In function 'Font_': -font.c:87:38: warning: '%s' directive writing up to 1023 bytes into a region of size 1019 [-Wformat-overflow=] - sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA); - ^~ ~~~~~~ -font.c:87:2: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 - sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security stereo.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security mono.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security position.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_doubles.c hybonds.c: In function 'HydrogenBonds_': hybonds.c:94:36: warning: '%s' directive writing up to 1023 bytes into a region of size 995 [-Wformat-overflow=] "Hydrogen bond drawing style \"%s\" not available!", @@ -752,26 +796,14 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tokenA); ~~~~~~~ -comm_backbone.c: In function 'CommandBackbone_': -comm_backbone.c:106:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1000 [-Wformat-overflow=] - "Backbone drawing style \"%s\" not available!", - ^~ - tokenA); - ~~~~~~ -comm_backbone.c:105:3: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 - sprintf (runtimeSP->messageA, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - "Backbone drawing style \"%s\" not available!", - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - tokenA); - ~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security mono.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security position.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_doubles.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security title.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security free_runtime.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_titles.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security foreground.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_oc.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_complement.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security labels.c stereo.c: In function 'CommandStereo_': stereo.c:79:14: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] "Keyword %s not recognized!", @@ -785,7 +817,13 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tokenA); ~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_complement.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security labels.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_labels.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security assign_radii.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security spacefill.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security spacefill_color.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_balls.c title.c: In function 'Title_': title.c:205:14: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] "Keyword %s not recognized!", tokenA); @@ -795,13 +833,8 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "Keyword %s not recognized!", tokenA); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security assign_radii.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security spacefill.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security spacefill_color.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_balls.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security center.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security write_line.c labels.c: In function 'Labels_': labels.c:81:14: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] "Keyword %s not recognized!", @@ -815,6 +848,7 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tokenA); ~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security write_line.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security big_spheres.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security tag.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_tags.c @@ -838,6 +872,15 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security psi_from_ncaco.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security vector_product.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security absolute_value.c +load_sequence.c: In function 'LoadSequence_': +load_sequence.c:139:25: warning: '%s' directive writing up to 1023 bytes into a region of size 1006 [-Wformat-overflow=] + "Bad residue name: %s", tokenA); + ^~ ~~~~~~ +load_sequence.c:138:4: note: 'sprintf' output between 19 and 1042 bytes into a destination of size 1024 + sprintf (runtimeSP->messageA, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + "Bad residue name: %s", tokenA); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security scalar_product.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security omega_from_cacnca.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_cis_trans.c @@ -848,15 +891,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_fasta.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save_sequence.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security wheel.c -load_sequence.c: In function 'LoadSequence_': -load_sequence.c:139:25: warning: '%s' directive writing up to 1023 bytes into a region of size 1006 [-Wformat-overflow=] - "Bad residue name: %s", tokenA); - ^~ ~~~~~~ -load_sequence.c:138:4: note: 'sprintf' output between 19 and 1042 bytes into a destination of size 1024 - sprintf (runtimeSP->messageA, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - "Bad residue name: %s", tokenA); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security wheel_top_view.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security wheel_bottom_view.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hydrophobicity.c @@ -872,12 +906,12 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save_seq_w_numbers.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ssb.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_alternate.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_model.c draw_venn.c: In function 'DrawVenn_': draw_venn.c:481:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] sprintf (stringA, "TOTAL: %d", residuesN); ~^ ~~~~~~~~~ %ld -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_model.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_model.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security window.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security plot.c @@ -929,6 +963,7 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_template_file.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_template_residues.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security count_template_res.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security create_structure.c open_template_file.c: In function 'OpenTemplateFile_': open_template_file.c:68:1: warning: 'strncat' specified bound 13 equals source length [-Wstringop-overflow=] strncat (template_file_nameA, "/residues.pdb", 13); @@ -936,7 +971,6 @@ open_template_file.c:79:1: warning: 'strncat' specified bound 20 equals source length [-Wstringop-overflow=] strncat (template_file_nameA, "/garlic/residues.pdb", 20); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security create_structure.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security required_atoms.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_template_atoms.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security fix_chain.c @@ -963,6 +997,7 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_seahorse.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security are_atoms_bound.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_partners.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_phi.c replace.c: In function 'Replace_': replace.c:204:53: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] "%d resid. selected but sequence buffer contains %d!", @@ -970,7 +1005,6 @@ %ld selected_residuesN, runtimeSP->residuesN); ~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_phi.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_psi.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cac.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_ramachandran.c @@ -1067,6 +1101,10 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2c3.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2cz3.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2nz3.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c4.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz4.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3nz4.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c5.c command_dump.c: In function 'Dump_': command_dump.c:195:43: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] if (output_fileF) fprintf (outfileP, "%8d", residueI); @@ -1076,10 +1114,6 @@ else fprintf (stdout, "%8d", residueI); ~~^ ~~~~~~~~ %8ld -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c4.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz4.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3nz4.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c5.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz5.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3nz5.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3p5.c @@ -1152,12 +1186,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/4448/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4448/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13342 and its subdirectories -I: Current time: Sat May 7 04:08:11 -12 2022 -I: pbuilder-time-stamp: 1651939691 +I: removing directory /srv/workspace/pbuilder/4448 and its subdirectories +I: Current time: Sun Apr 4 23:45:43 +14 2021 +I: pbuilder-time-stamp: 1617529543