Diff of the two buildlogs: -- --- b1/build.log 2021-08-18 15:50:17.547517041 +0000 +++ b2/build.log 2021-08-18 17:28:33.199878828 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 20 09:32:39 -12 2022 -I: pbuilder-time-stamp: 1663709559 +I: Current time: Thu Aug 19 05:50:25 +14 2021 +I: pbuilder-time-stamp: 1629301825 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sun Feb 17 06:12:37 2019 -12 +gpgv: Signature made Mon Feb 18 08:12:37 2019 +14 gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" gpgv: Can't check signature: No public key @@ -34,136 +34,170 @@ dpkg-source: info: applying local-mathjax.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2767995/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/852631/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/852631/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/852631/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='41bfc10df91c46898ebec32a4e8c519b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2767995' - PS1='# ' - PS2='> ' + INVOCATION_ID=ca1d5e8381fa4ee6923d6192d5776756 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=852631 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.anMrhSkCTR/pbuilderrc_Ga1p --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.anMrhSkCTR/b1 --logfile b1/build.log gromacs_2019.1-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.anMrhSkCTR/pbuilderrc_fwxX --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.anMrhSkCTR/b2 --logfile b2/build.log gromacs_2019.1-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 9 02:47 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2767995/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 19 05:51 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 7 22:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/852631/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -515,7 +549,7 @@ Get: 268 http://deb.debian.org/debian buster/main amd64 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 269 http://deb.debian.org/debian buster/main amd64 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Get: 270 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] -Fetched 215 MB in 3s (69.0 MB/s) +Fetched 215 MB in 9s (24.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -1697,7 +1731,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/gromacs-2019.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gromacs_2019.1-1_source.changes +hostname: Name or service not known +I: Running cd /build/gromacs-2019.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gromacs_2019.1-1_source.changes dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2019.1-1 dpkg-buildpackage: info: source distribution unstable @@ -3049,7 +3084,7 @@ -- Build files have been written to: /build/gromacs-2019.1/build/openmpi-dp touch configure-stamp dh_testdir -/usr/bin/make -j16 -C build/basic +/usr/bin/make -j15 -C build/basic make[1]: Entering directory '/build/gromacs-2019.1/build/basic' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic/CMakeFiles /build/gromacs-2019.1/build/basic/CMakeFiles/progress.marks @@ -3058,177 +3093,181 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -Scanning dependencies of target lmfit_objlib -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +Scanning dependencies of target lmfit_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp Scanning dependencies of target tng_io_obj +Scanning dependencies of target view_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -Scanning dependencies of target view_objlib +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/gromacs-2019.1/src/programs/view/3dview.cpp make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2019.1/src/programs/view/buttons.cpp +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/gromacs-2019.1/src/programs/view/dialogs.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/gromacs-2019.1/src/programs/view/fgrid.cpp +Scanning dependencies of target libgromacs_external +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/gromacs-2019.1/src/programs/view/3dview.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp Scanning dependencies of target mdrun_test_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -Scanning dependencies of target libgromacs_external /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/energyreader.cpp -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o 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/build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /build/gromacs-2019.1/src/programs/view/filter.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o 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-I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c -Scanning dependencies of target libgromacs_generated -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /build/gromacs-2019.1/src/programs/view/logo.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /build/gromacs-2019.1/src/programs/view/manager.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. 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-I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 1%] Built target view_objlib cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp -[ 1%] Built target view_objlib cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 1%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 1%] Built target lmfit_objlib +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o 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-ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o 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-I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/list.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c 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/build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp -[ 4%] Built target libgromacs_external -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/scan.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/numa_malloc.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/once.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp @@ -3263,8 +3296,6 @@ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 6%] Built target tng_io_obj cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp @@ -3272,7 +3303,9 @@ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp +[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp @@ -3285,7 +3318,9 @@ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp +[ 5%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp @@ -3303,15 +3338,15 @@ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp +[ 8%] Built target libgromacs_external cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 8%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp @@ -4223,22 +4258,22 @@ make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' [100%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/share/template /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/share/template /build/gromacs-2019.1/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= +Scanning dependencies of target template +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /build/gromacs-2019.1/share/template/template.cpp Scanning dependencies of target gmx make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -Scanning dependencies of target template make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/gromacs-2019.1/src/programs/gmx.cpp cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/gromacs-2019.1/src/programs/legacymodules.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /build/gromacs-2019.1/share/template/template.cpp cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib: ../../lib/libgromacs.so.4.0.0 -fopenmp /usr/lib/x86_64-linux-gnu/libX11.so -lm make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' @@ -4250,7 +4285,7 @@ make[2]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic/CMakeFiles 0 make[1]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -j16 -C build/basic-dp +/usr/bin/make -j15 -C build/basic-dp make[1]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic-dp/CMakeFiles /build/gromacs-2019.1/build/basic-dp/CMakeFiles/progress.marks @@ -4259,188 +4294,176 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +Scanning dependencies of target tng_io_obj make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp -Scanning dependencies of target tng_io_obj -Scanning dependencies of target view_objlib -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c +Scanning dependencies of target view_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c -Scanning dependencies of target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/gromacs-2019.1/src/programs/view/3dview.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2019.1/src/programs/view/buttons.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c Scanning dependencies of target mdrun_test_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/gromacs-2019.1/src/programs/view/dialogs.cpp +Scanning dependencies of target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/energyreader.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c Scanning dependencies of target libgromacs_generated -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/gromacs-2019.1/src/programs/view/fgrid.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/energycomparison.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/moduletest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2019.1/src/programs/view/buttons.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/gromacs-2019.1/src/programs/view/dialogs.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/gromacs-2019.1/src/programs/view/fgrid.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /build/gromacs-2019.1/src/programs/view/filter.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /build/gromacs-2019.1/src/programs/view/logo.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /build/gromacs-2019.1/src/programs/view/manager.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /build/gromacs-2019.1/src/programs/view/molps.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /build/gromacs-2019.1/src/programs/view/nleg.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs && 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-I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /build/gromacs-2019.1/src/programs/view/xutil.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused 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/build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/alltoall.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/p2p_protocol.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/barrier.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/p2p_send_recv.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp +[ 1%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/bcast.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/p2p_wait.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/collective.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/profile.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/comm.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/reduce.cpp -[ 1%] Built target view_objlib -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectorycomparison.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/event.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectoryreader.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/reduce_fast.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/gather.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectorycomparison.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 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/build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 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/usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat 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-I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] - "%4d-%02d-%02d %02d:%02d:%02d", - ^~~~ -In file included from /usr/include/stdio.h:873, - from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, - from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp @@ -4459,9 +4482,19 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] + "%4d-%02d-%02d %02d:%02d:%02d", + ^~~~ +In file included from /usr/include/stdio.h:873, + from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, + from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp @@ -4471,9 +4504,7 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp -[ 6%] Built target libgromacs_external cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp @@ -4483,6 +4514,8 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp @@ -4497,11 +4530,11 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 6%] Built target libgromacs_external cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp -[ 8%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp @@ -4529,6 +4562,8 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 8%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp @@ -5429,17 +5464,17 @@ cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/share/template /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/share/template /build/gromacs-2019.1/build/basic-dp/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= +Scanning dependencies of target template +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build Scanning dependencies of target gmx make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/share/template && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /build/gromacs-2019.1/share/template/template.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/gromacs-2019.1/src/programs/gmx.cpp -Scanning dependencies of target template cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/gromacs-2019.1/src/programs/legacymodules.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/share/template && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /build/gromacs-2019.1/share/template/template.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx_d -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib: ../../lib/libgromacs_d.so.4.0.0 -fopenmp /usr/lib/x86_64-linux-gnu/libX11.so -lm make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' @@ -5451,7 +5486,7 @@ make[2]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic-dp/CMakeFiles 0 make[1]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -j16 -C build/basic tests +/usr/bin/make -j15 -C build/basic tests make[1]: Entering directory '/build/gromacs-2019.1/build/basic' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -5463,85 +5498,85 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/external/googletest /build/gromacs-2019.1/build/basic/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/external/googletest /build/gromacs-2019.1/build/basic/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +[ 0%] Built target lmfit_objlib make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +Scanning dependencies of target onlinehelp-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +Scanning dependencies of target gmock make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -[ 0%] Built target lmfit_objlib -Scanning dependencies of target onlinehelp-test-shared -[ 0%] Built target mdrun_objlib -Scanning dependencies of target gmock +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +Scanning dependencies of target analysisdata-test-shared make[4]: Entering directory '/build/gromacs-2019.1/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build Scanning dependencies of target mdrunutility-test-shared -[ 2%] Built target tng_io_obj make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -Scanning dependencies of target analysisdata-test-shared -[ 3%] Built target mdrun_test_objlib /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/datatest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp +[ 0%] Built target mdrun_objlib +[ 2%] Built target tng_io_obj +[ 3%] Built target mdrun_test_objlib [ 5%] Built target libgromacs_external make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/datatest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' @@ -5605,155 +5640,174 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/testutils/tests /build/gromacs-2019.1/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/testutils/tests /build/gromacs-2019.1/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/testutils/tests /build/gromacs-2019.1/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp +Scanning dependencies of target mdrun-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +Scanning dependencies of target listed-forces-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/math/tests /build/gromacs-2019.1/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend +cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp +Scanning dependencies of target testutils-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +Scanning dependencies of target applied-forces-test +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/math/tests /build/gromacs-2019.1/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build +Scanning dependencies of target hardware-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -Scanning dependencies of target hardware-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build -Scanning dependencies of target gpu_utils-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -Scanning dependencies of target applied-forces-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -Scanning dependencies of target mdrunutility-mpi-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build -Scanning dependencies of target domdec-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp Scanning dependencies of target fft-test -Scanning dependencies of target testutils-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -Scanning dependencies of target mdrunutility-test -Scanning dependencies of target mdlib-test -Scanning dependencies of target listed-forces-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +Scanning dependencies of target mdlib-test +Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +Scanning dependencies of target gpu_utils-test +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp -Scanning dependencies of target testutils-mpi-test -Scanning dependencies of target mdrun-mpi-test /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -Scanning dependencies of target math-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build +cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp +Scanning dependencies of target math-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -Scanning dependencies of target onlinehelp-test +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp -Scanning dependencies of target ewald-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 84%] Built target testutils-mpi-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 84%] Built target testutils-mpi-test +[ 84%] Built target listed-forces-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 84%] Built target applied-forces-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +[ 84%] Built target hardware-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/options/tests /build/gromacs-2019.1/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp Scanning dependencies of target options-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 84%] Built target listed-forces-test +[ 84%] Built target fft-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/random/tests /build/gromacs-2019.1/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -5762,83 +5816,85 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 84%] Built target applied-forces-test +[ 85%] Built target domdec-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisimtest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 84%] Built target hardware-test +[ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -[ 84%] Built target fft-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 85%] Built target testutils-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp -Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -[ 84%] Built target mdrunutility-test +[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend +Scanning dependencies of target taskassignment-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target domdec-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' Scanning dependencies of target utility-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -[ 85%] Built target mdrunutility-mpi-test -/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 85%] Built target mdrunutility-mpi-test +/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test @@ -5846,15 +5902,6 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -5863,11 +5910,13 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target onlinehelp-test +[ 85%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -5876,88 +5925,89 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target utility-mpi-test -/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= -Scanning dependencies of target simd-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +[ 85%] Built target mdrun-mpi-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +[ 85%] Built target onlinehelp-test +/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend [ 85%] Built target pull-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend -[ 85%] Built target taskassignment-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp +Scanning dependencies of target simd-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 85%] Built target taskassignment-test +/usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxana-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/entropy.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" 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-DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_traj.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -[ 85%] Built target testutils-test +[ 86%] Built target compat-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake --color= -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp Scanning dependencies of target pdb2gmx-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -[ 86%] Built target compat-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 86%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= @@ -5966,47 +6016,44 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_trjconv.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 86%] Built target fileio-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp Scanning dependencies of target correlations-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_trjconv.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/readir.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 86%] Built target gpu_utils-test +[ 86%] Built target table-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/readir.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 86%] Built target table-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= @@ -6016,20 +6063,13 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/indexutil.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_msd.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/solvate.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 87%] Built target awh-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend @@ -6040,12 +6080,8 @@ /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 87%] Built target mdrun-mpi-test +[ 88%] Built target mdlib-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -6054,9 +6090,17 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/solvate.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 87%] Built target gmxana-test +[ 88%] Built target correlations-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= @@ -6065,186 +6109,177 @@ /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /build/gromacs-2019.1/src/gromacs/tools/tests/report-methods.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 -[ 87%] Built target pdb2gmx-test +[ 89%] Built target random-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm Scanning dependencies of target mdrun-non-integrator-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -[ 87%] Built target correlations-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +[ 89%] Built target gmxana-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp Scanning dependencies of target legacy-mdrun-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/tpitest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -[ 88%] Built target gmxpreprocess-test +[ 89%] Built target pdb2gmx-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 Scanning dependencies of target mdrun-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/compressed_x_output.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 89%] Built target mdlib-test -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 89%] Built target energyanalysis-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 90%] Built target gmxpreprocess-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/poscalc.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 89%] Built target tool-test -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/grompp.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +[ 90%] Built target tool-test cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/poscalc.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/grompp.cpp +cd 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/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/legacy-mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/legacy-mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/initialconstraints.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 92%] Built target ewald-test cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o 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/build/gromacs-2019.1/src/gromacs/selection/tests/selectionoption.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/initialconstraints.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 89%] Built target legacy-mdrun-test -cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/toputils.cpp -cd 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-DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security 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-DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/arraydata.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/rerun.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -[ 89%] Built target commandline-test -cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/average.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectionoption.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/toputils.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 90%] Built target ewald-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/rerun.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 92%] Built target random-test +[ 92%] Built target commandline-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 93%] Built target math-test cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/interactiveMD.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/arraydata.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/angle.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/average.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/distance.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 93%] Built target math-test cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/swapcoords.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c 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/build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/select.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/histogram.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 94%] Built target options-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 +cd 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/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/termination.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 94%] Built target options-test +[ 94%] Built target mdrun-non-integrator-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectory_writing.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/select.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 94%] Built target mdrun-non-integrator-test cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/unionfind.cpp -[ 94%] Built target analysisdata-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/termination.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectory_writing.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +[ 95%] Built target simd-test +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp -[ 95%] Built target simd-test cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 96%] Built target mdrun-test cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp +[ 96%] Built target mdrun-test cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 97%] Built target trajectoryanalysis-test +[ 96%] Built target analysisdata-test cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 98%] Built target selection-test +[ 97%] Built target selection-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 98%] Built target trajectoryanalysis-test cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' @@ -6284,13 +6319,13 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (5 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput @@ -6298,12 +6333,12 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (5 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (8 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -6319,19 +6354,19 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData -1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree @@ -6341,9 +6376,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -6351,17 +6386,17 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData -1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges @@ -6369,12 +6404,12 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (5 ms total) +1: [----------] 34 tests from ReferenceDataTest (6 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -6413,12 +6448,12 @@ 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (11 ms total) +1: [==========] 59 tests from 5 test cases ran. (16 ms total) 1: [ PASSED ] 59 tests. - 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.03 sec + 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.28 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -6428,13 +6463,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (1 ms) -2: [----------] 1 test from MpiSelfTest (1 ms total) +2: [ OK ] MpiSelfTest.Runs (30 ms) +2: [----------] 1 test from MpiSelfTest (31 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (1 ms total) +2: [==========] 1 test from 1 test case ran. (31 ms total) 2: [ PASSED ] 1 test. - 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.01 sec + 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.05 sec test 3 Start 3: MdlibUnitTest @@ -6449,12 +6484,12 @@ 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) +3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (14 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) -3: [----------] 3 tests from PrintEbin (0 ms total) +3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (4 ms) +3: [----------] 3 tests from PrintEbin (18 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond @@ -6464,8 +6499,8 @@ 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms -3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (1 ms) -3: [----------] 4 tests from ShakeTest (1 ms total) +3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) +3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks @@ -6567,9 +6602,9 @@ 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (4 ms total) +3: [==========] 50 tests from 8 test cases ran. (20 ms total) 3: [ PASSED ] 50 tests. - 3/40 Test #3: MdlibUnitTest .................... Passed 0.03 sec + 3/40 Test #3: MdlibUnitTest .................... Passed 0.09 sec test 4 Start 4: AppliedForcesUnitTest @@ -6589,7 +6624,7 @@ 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (0 ms total) 4: [ PASSED ] 3 tests. - 4/40 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec + 4/40 Test #4: AppliedForcesUnitTest ............ Passed 0.06 sec test 5 Start 5: ListedForcesTest @@ -6599,15 +6634,15 @@ 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone -5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) +5: [ OK ] BondedTest.BondAnglePbcNone (19 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy -5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) +5: [ OK ] BondedTest.BondAnglePbcXy (8 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone -5: [ OK ] BondedTest.DihedralAnglePbcNone (1 ms) +5: [ OK ] BondedTest.DihedralAnglePbcNone (3 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy -5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) +5: [ OK ] BondedTest.DihedralAnglePbcXy (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo @@ -6619,21 +6654,21 @@ 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy -5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) +5: [ OK ] BondedTest.IfuncAnglesPbcXy (2 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo -5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) +5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (3 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) -5: [----------] 15 tests from BondedTest (1 ms total) +5: [----------] 15 tests from BondedTest (37 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 15 tests from 1 test case ran. (1 ms total) +5: [==========] 15 tests from 1 test case ran. (37 ms total) 5: [ PASSED ] 15 tests. - 5/40 Test #5: ListedForcesTest ................. Passed 0.01 sec + 5/40 Test #5: ListedForcesTest ................. Passed 0.07 sec test 6 Start 6: CommandLineUnitTests @@ -6643,18 +6678,18 @@ 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (12 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (24 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions @@ -6663,17 +6698,17 @@ 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (36 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule -6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames @@ -6702,7 +6737,7 @@ 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault -6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) +6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (1 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions @@ -6730,7 +6765,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs -6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (1 ms) +6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs @@ -6756,23 +6791,23 @@ 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified -6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (1 ms) +6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension -6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) +6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -6: [----------] 21 tests from ParseCommonArgsTest (3 ms total) +6: [----------] 21 tests from ParseCommonArgsTest (1 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (9 ms total) +6: [==========] 55 tests from 6 test cases ran. (41 ms total) 6: [ PASSED ] 55 tests. - 6/40 Test #6: CommandLineUnitTests ............. Passed 0.03 sec + 6/40 Test #6: CommandLineUnitTests ............. Passed 0.08 sec test 7 Start 7: DomDecTests @@ -6817,219 +6852,219 @@ 8: [----------] Global test environment set-up. 8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (17 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (394 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (412 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (9 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (7 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (31 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (7 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (9 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (55 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (8 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (245 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (2 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (11 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 @@ -7037,101 +7072,101 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (2 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 @@ -7139,7 +7174,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 @@ -7147,222 +7182,222 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (2 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (39 ms total) +8: [----------] 144 tests from SaneInput/PmeGatherTest (550 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (12 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (8 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (8 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (6 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (8 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (9 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (16 ms total) +8: [----------] 16 tests from SaneInput/PmeSolveTest (67 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (6 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (7 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (9 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (5 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (5 ms total) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (9 ms) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (39 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (8 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (8 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (9 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (27 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (8 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (7 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (7 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (9 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (9 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (9 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (7 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (0 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (13 ms total) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (67 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (7 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (8 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (8 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (7 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (12 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (8 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (11 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (15 ms total) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (82 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (9 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (17 ms total) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (6 ms) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (39 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (11 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (47 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (37 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (128 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (259 ms total) +8: [==========] 257 tests from 10 test cases ran. (1859 ms total) 8: [ PASSED ] 257 tests. - 8/40 Test #8: EwaldUnitTests ................... Passed 0.30 sec + 8/40 Test #8: EwaldUnitTests ................... Passed 1.98 sec test 9 Start 9: FFTUnitTests @@ -7372,48 +7407,48 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (8 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (37 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (26 ms) -9: [----------] 2 tests from ManyFFTTest (36 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (91 ms) +9: [----------] 2 tests from ManyFFTTest (129 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (6 ms) -9: [----------] 1 test from FFTTest (6 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (28 ms) +9: [----------] 1 test from FFTTest (28 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -9: [----------] 1 test from FFFTest3D (2 ms total) +9: [ OK ] FFFTest3D.Real5_6_9 (11 ms) +9: [----------] 1 test from FFFTest3D (11 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (7 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (18 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (18 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (12 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (46 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (18 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (40 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (77 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (172 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (84 ms total) +9: [==========] 14 tests from 4 test cases ran. (340 ms total) 9: [ PASSED ] 14 tests. - 9/40 Test #9: FFTUnitTests ..................... Passed 0.10 sec + 9/40 Test #9: FFTUnitTests ..................... Passed 0.39 sec test 10 Start 10: GpuUtilsUnitTests @@ -7558,12 +7593,12 @@ 10: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.Move 10: [ OK ] AllocatorTest/0.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/0 (1 ms total) +10: [----------] 4 tests from AllocatorTest/0 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -7580,12 +7615,12 @@ 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (0 ms total) +10: [----------] 4 tests from AllocatorTest/2 (1 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -7601,7 +7636,7 @@ 10: [----------] Global test environment tear-down 10: [==========] 60 tests from 19 test cases ran. (1 ms total) 10: [ PASSED ] 60 tests. -10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.01 sec +10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.05 sec test 11 Start 11: HardwareUnitTests @@ -7611,19 +7646,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (35 ms) +11: [ OK ] HardwareTopologyTest.Execute (119 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (27 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (120 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (25 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (111 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (28 ms) -11: [----------] 4 tests from HardwareTopologyTest (115 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (115 ms) +11: [----------] 4 tests from HardwareTopologyTest (466 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (115 ms total) +11: [==========] 4 tests from 1 test case ran. (466 ms total) 11: [ PASSED ] 4 tests. -11/40 Test #11: HardwareUnitTests ................ Passed 0.13 sec +11/40 Test #11: HardwareUnitTests ................ Passed 0.51 sec test 12 Start 12: MathUnitTests @@ -7660,7 +7695,7 @@ 12: [ OK ] ArrayRefWithPaddingTest/2.AssignFromPaddedVectorWorks (0 ms) 12: [ RUN ] ArrayRefWithPaddingTest/2.ConstructFromPointersWorks 12: [ OK ] ArrayRefWithPaddingTest/2.ConstructFromPointersWorks (0 ms) -12: [----------] 2 tests from ArrayRefWithPaddingTest/2 (1 ms total) +12: [----------] 2 tests from ArrayRefWithPaddingTest/2 (0 ms total) 12: 12: [----------] 6 tests from StructureSimilarityTest 12: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -7675,21 +7710,21 @@ 12: [ OK ] StructureSimilarityTest.YieldsCorrectRMSDWithIndex (0 ms) 12: [ RUN ] StructureSimilarityTest.YieldsCorrectRhoWidthIndex 12: [ OK ] StructureSimilarityTest.YieldsCorrectRhoWidthIndex (0 ms) -12: [----------] 6 tests from StructureSimilarityTest (0 ms total) +12: [----------] 6 tests from StructureSimilarityTest (1 ms total) 12: 12: [----------] 21 tests from FunctionTest 12: [ RUN ] FunctionTest.StaticLog2 12: [ OK ] FunctionTest.StaticLog2 (0 ms) 12: [ RUN ] FunctionTest.Log2I32Bit -12: [ OK ] FunctionTest.Log2I32Bit (0 ms) +12: [ OK ] FunctionTest.Log2I32Bit (6 ms) 12: [ RUN ] FunctionTest.Log2I64Bit 12: [ OK ] FunctionTest.Log2I64Bit (0 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor 12: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 12: [ RUN ] FunctionTest.InvsqrtFloat -12: [ OK ] FunctionTest.InvsqrtFloat (0 ms) +12: [ OK ] FunctionTest.InvsqrtFloat (4 ms) 12: [ RUN ] FunctionTest.InvsqrtDouble -12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) +12: [ OK ] FunctionTest.InvsqrtDouble (4 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger 12: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 12: [ RUN ] FunctionTest.InvcbrtFloat @@ -7713,14 +7748,14 @@ 12: [ RUN ] FunctionTest.Powers 12: [ OK ] FunctionTest.Powers (0 ms) 12: [ RUN ] FunctionTest.ErfInvFloat -12: [ OK ] FunctionTest.ErfInvFloat (1 ms) +12: [ OK ] FunctionTest.ErfInvFloat (3 ms) 12: [ RUN ] FunctionTest.ErfInvDouble 12: [ OK ] FunctionTest.ErfInvDouble (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -12: [----------] 21 tests from FunctionTest (3 ms total) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) +12: [----------] 21 tests from FunctionTest (19 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -7745,7 +7780,7 @@ 12: [ OK ] PaddedVectorTest/0.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/0.CanSwap 12: [ OK ] PaddedVectorTest/0.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/0 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/0 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/1, where TypeParam = std::allocator 12: [ RUN ] PaddedVectorTest/1.ConstructsResizesAndReserves @@ -7910,15 +7945,15 @@ 12: [ RUN ] RVecTest.CopyAssignmentWorks 12: [ OK ] RVecTest.CopyAssignmentWorks (0 ms) 12: [ RUN ] RVecTest.MoveConstructorWorks -12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) +12: [ OK ] RVecTest.MoveConstructorWorks (1 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (0 ms total) +12: [----------] 33 tests from RVecTest (1 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (5 ms total) +12: [==========] 112 tests from 20 test cases ran. (21 ms total) 12: [ PASSED ] 112 tests. -12/40 Test #12: MathUnitTests .................... Passed 0.03 sec +12/40 Test #12: MathUnitTests .................... Passed 0.06 sec test 13 Start 13: MdrunUtilityUnitTests @@ -7955,20 +7990,20 @@ 13: NOTE: Affinity setting failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (18 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (4 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (4 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (4 ms) +13: [----------] 17 tests from ThreadAffinityTest (28 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (4 ms total) +13: [==========] 17 tests from 1 test case ran. (28 ms total) 13: [ PASSED ] 17 tests. -13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.02 sec +13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.07 sec test 14 Start 14: MdrunUtilityMpiUnitTests @@ -7978,40 +8013,40 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (121 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (3 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (195 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (52 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (36 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (59 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (10 ms total) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (76 ms) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (541 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (2 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (79 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (51 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (130 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (2 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (62 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (92 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (2 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (72 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (10 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (100 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (588 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (20 ms total) +14: [==========] 13 tests from 2 test cases ran. (1129 ms total) 14: [ PASSED ] 13 tests. -14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.03 sec +14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.16 sec test 15 Start 15: OnlineHelpUnitTests @@ -8021,34 +8056,34 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from TextTableFormatterTest 15: [ RUN ] TextTableFormatterTest.HandlesBasicCase -15: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) +15: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles -15: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) +15: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (1 ms) 15: [ RUN ] TextTableFormatterTest.HandlesIndentation 15: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines -15: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) +15: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (1 ms) 15: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns -15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -15: [----------] 6 tests from TextTableFormatterTest (0 ms total) +15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (1 ms) +15: [----------] 6 tests from TextTableFormatterTest (4 ms total) 15: 15: [----------] 3 tests from HelpManagerTest 15: [ RUN ] HelpManagerTest.HandlesRootTopic 15: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 15: [ RUN ] HelpManagerTest.HandlesSubTopics -15: [ OK ] HelpManagerTest.HandlesSubTopics (1 ms) +15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics 15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -15: [----------] 3 tests from HelpManagerTest (1 ms total) +15: [----------] 3 tests from HelpManagerTest (0 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 15: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) -15: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) +15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) +15: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) 15: 15: [----------] 11 tests from HelpWriterContextTest 15: [ RUN ] HelpWriterContextTest.FormatsParagraphs @@ -8062,7 +8097,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation -15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList 15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList @@ -8073,10 +8108,10 @@ 15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles 15: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -15: [----------] 11 tests from HelpWriterContextTest (1 ms total) +15: [----------] 11 tests from HelpWriterContextTest (0 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (2 ms total) +15: [==========] 22 tests from 4 test cases ran. (5 ms total) 15: [ PASSED ] 22 tests. 15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.02 sec test 16 @@ -8092,9 +8127,9 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 16: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (1 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 16: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) @@ -8128,7 +8163,7 @@ 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (1 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified @@ -8149,7 +8184,7 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -8215,7 +8250,7 @@ 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -8257,14 +8292,14 @@ 16: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 16: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange -16: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (1 ms) +16: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) -16: [----------] 6 tests from OptionsAssignerEnumTest (1 ms total) +16: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 16: 16: [----------] 8 tests from RepeatingOptionSectionTest 16: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance @@ -8310,8 +8345,8 @@ 16: 16: [----------] 1 test from TreeValueSupportAssignErrorTest 16: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue -16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) -16: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) +16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (1 ms) +16: [----------] 1 test from TreeValueSupportAssignErrorTest (1 ms total) 16: 16: [----------] 5 tests from TreeValueSupportCheckTest 16: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty @@ -8328,24 +8363,24 @@ 16: 16: [----------] 6 tests from TreeValueSupportAdjustTest 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues -16: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (1 ms) 16: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues -16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (1 ms) +16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues -16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -16: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (1 ms) +16: [----------] 6 tests from TreeValueSupportAdjustTest (3 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption -16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option 16: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsStringOption @@ -8357,13 +8392,13 @@ 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption -16: [ OK ] TreeValueSupportTest.SupportsEnumOption (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 16: [----------] 8 tests from TreeValueSupportTest (1 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (5 ms total) +16: [==========] 110 tests from 18 test cases ran. (8 ms total) 16: [ PASSED ] 110 tests. -16/40 Test #16: OptionsUnitTests ................. Passed 0.02 sec +16/40 Test #16: OptionsUnitTests ................. Passed 0.05 sec test 17 Start 17: RandomUnitTests @@ -8373,36 +8408,36 @@ 17: [----------] Global test environment set-up. 17: [----------] 4 tests from ExponentialDistributionTest 17: [ RUN ] ExponentialDistributionTest.Output -17: [ OK ] ExponentialDistributionTest.Output (0 ms) +17: [ OK ] ExponentialDistributionTest.Output (1 ms) 17: [ RUN ] ExponentialDistributionTest.Logical 17: [ OK ] ExponentialDistributionTest.Logical (0 ms) 17: [ RUN ] ExponentialDistributionTest.Reset 17: [ OK ] ExponentialDistributionTest.Reset (0 ms) 17: [ RUN ] ExponentialDistributionTest.AltParam 17: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from ExponentialDistributionTest (0 ms total) +17: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 17: 17: [----------] 4 tests from GammaDistributionTest 17: [ RUN ] GammaDistributionTest.Output -17: [ OK ] GammaDistributionTest.Output (0 ms) +17: [ OK ] GammaDistributionTest.Output (2 ms) 17: [ RUN ] GammaDistributionTest.Logical 17: [ OK ] GammaDistributionTest.Logical (0 ms) 17: [ RUN ] GammaDistributionTest.Reset 17: [ OK ] GammaDistributionTest.Reset (0 ms) 17: [ RUN ] GammaDistributionTest.AltParam 17: [ OK ] GammaDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from GammaDistributionTest (0 ms total) +17: [----------] 4 tests from GammaDistributionTest (2 ms total) 17: 17: [----------] 4 tests from NormalDistributionTest 17: [ RUN ] NormalDistributionTest.Output -17: [ OK ] NormalDistributionTest.Output (1 ms) +17: [ OK ] NormalDistributionTest.Output (0 ms) 17: [ RUN ] NormalDistributionTest.Logical 17: [ OK ] NormalDistributionTest.Logical (0 ms) 17: [ RUN ] NormalDistributionTest.Reset 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (1 ms total) +17: [----------] 4 tests from NormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -8411,7 +8446,7 @@ 17: 17: [----------] 6 tests from TabulatedNormalDistributionTest 17: [ RUN ] TabulatedNormalDistributionTest.Output14 -17: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) +17: [ OK ] TabulatedNormalDistributionTest.Output14 (1 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Output16 17: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 @@ -8422,12 +8457,12 @@ 17: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.AltParam 17: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -17: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) +17: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical @@ -8446,18 +8481,18 @@ 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output -17: [ OK ] UniformIntDistributionTest.Output (1 ms) +17: [ OK ] UniformIntDistributionTest.Output (0 ms) 17: [ RUN ] UniformIntDistributionTest.Logical 17: [ OK ] UniformIntDistributionTest.Logical (0 ms) 17: [ RUN ] UniformIntDistributionTest.Reset 17: [ OK ] UniformIntDistributionTest.Reset (0 ms) 17: [ RUN ] UniformIntDistributionTest.AltParam 17: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from UniformIntDistributionTest (1 ms total) +17: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 17: 17: [----------] 5 tests from UniformRealDistributionTest 17: [ RUN ] UniformRealDistributionTest.GenerateCanonical -17: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) +17: [ OK ] UniformRealDistributionTest.GenerateCanonical (1 ms) 17: [ RUN ] UniformRealDistributionTest.Output 17: [ OK ] UniformRealDistributionTest.Output (0 ms) 17: [ RUN ] UniformRealDistributionTest.Logical @@ -8466,7 +8501,7 @@ 17: [ OK ] UniformRealDistributionTest.Reset (0 ms) 17: [ RUN ] UniformRealDistributionTest.AltParam 17: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -17: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +17: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -8478,19 +8513,19 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (2 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (6 ms total) +17: [==========] 44 tests from 10 test cases ran. (9 ms total) 17: [ PASSED ] 44 tests. 17/40 Test #17: RandomUnitTests .................. Passed 0.03 sec test 18 @@ -8508,7 +8543,7 @@ 18: [----------] Global test environment tear-down 18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. -18/40 Test #18: RestraintTests ................... Passed 0.01 sec +18/40 Test #18: RestraintTests ................... Passed 0.04 sec test 19 Start 19: TableUnitTests @@ -8518,54 +8553,54 @@ 19: [----------] Global test environment set-up. 19: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (4 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (10 ms) 19: [ RUN ] SplineTableTest/0.Sinc 19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (25 ms) +19: [ OK ] SplineTableTest/0.LJ12 (79 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection -19: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) +19: [ OK ] SplineTableTest/0.PmeCorrection (7 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (0 ms) +19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (40 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (80 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (42 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (63 ms) 19: [ RUN ] SplineTableTest/0.Simd -19: [ OK ] SplineTableTest/0.Simd (10 ms) +19: [ OK ] SplineTableTest/0.Simd (13 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (39 ms) -19: [----------] 10 tests from SplineTableTest/0 (163 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (55 ms) +19: [----------] 10 tests from SplineTableTest/0 (310 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (2 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (6 ms) 19: [ RUN ] SplineTableTest/1.Sinc 19: [ OK ] SplineTableTest/1.Sinc (1 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (3 ms) +19: [ OK ] SplineTableTest/1.LJ12 (4 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection 19: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) +19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (5 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (7 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (11 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (6 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (8 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (2 ms) +19: [ OK ] SplineTableTest/1.Simd (3 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (7 ms) -19: [----------] 10 tests from SplineTableTest/1 (30 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (14 ms) +19: [----------] 10 tests from SplineTableTest/1 (57 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (193 ms total) +19: [==========] 20 tests from 2 test cases ran. (367 ms total) 19: [ PASSED ] 20 tests. -19/40 Test #19: TableUnitTests ................... Passed 0.21 sec +19/40 Test #19: TableUnitTests ................... Passed 0.41 sec test 20 Start 20: TaskAssignmentUnitTests @@ -8579,13 +8614,13 @@ 20: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 20: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow -20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) -20: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) +20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) +20: [----------] 3 tests from GpuIdStringHandlingTest (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 3 tests from 1 test case ran. (1 ms total) +20: [==========] 3 tests from 1 test case ran. (0 ms total) 20: [ PASSED ] 3 tests. -20/40 Test #20: TaskAssignmentUnitTests .......... Passed 0.02 sec +20/40 Test #20: TaskAssignmentUnitTests .......... Passed 0.04 sec test 21 Start 21: UtilityUnitTests @@ -8630,7 +8665,7 @@ 21: [ OK ] AllocatorTest/2.Move (0 ms) 21: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/2 (1 ms total) +21: [----------] 5 tests from AllocatorTest/2 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -8649,14 +8684,14 @@ 21: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.Move 21: [ OK ] AllocatorTest/4.Move (0 ms) 21: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/4 (0 ms total) +21: [----------] 5 tests from AllocatorTest/4 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment @@ -8768,7 +8803,7 @@ 21: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/3 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/3 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks @@ -8810,7 +8845,7 @@ 21: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/5 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/5 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks @@ -9062,7 +9097,7 @@ 21: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/17 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/17 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks @@ -9083,7 +9118,7 @@ 21: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/18 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks @@ -9108,29 +9143,29 @@ 21: 21: [----------] 4 tests from KeyValueTreeSerializerTest 21: [ RUN ] KeyValueTreeSerializerTest.EmptyTree -21: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.EmptyTree (25 ms) 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject -21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (8 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -21: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +21: [----------] 4 tests from KeyValueTreeSerializerTest (33 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest 21: [ RUN ] TreeValueTransformTest.SimpleTransforms -21: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) +21: [ OK ] TreeValueTransformTest.SimpleTransforms (8 ms) 21: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive -21: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) +21: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (4 ms) 21: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 21: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromString -21: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (4 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -21: [----------] 6 tests from TreeValueTransformTest (1 ms total) +21: [----------] 6 tests from TreeValueTransformTest (16 ms total) 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -9170,12 +9205,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (6 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (1 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (3 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (1 ms total) +21: [----------] 3 tests from MutexTaskTest (10 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -9257,7 +9292,7 @@ 21: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 21: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectly -21: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) +21: [ OK ] TextLineWrapperTest.WrapsCorrectly (7 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesIndent @@ -9270,7 +9305,7 @@ 21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -21: [----------] 10 tests from TextLineWrapperTest (1 ms total) +21: [----------] 10 tests from TextLineWrapperTest (8 ms total) 21: 21: [----------] 6 tests from TextWriterTest 21: [ RUN ] TextWriterTest.WritesLines @@ -9305,7 +9340,7 @@ 21: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 21: [ RUN ] BitmaskTest32_11/BitmaskTest32.ToHex/0 21: [ OK ] BitmaskTest32_11/BitmaskTest32.ToHex/0 (0 ms) -21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) +21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (1 ms total) 21: 21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 @@ -9332,7 +9367,7 @@ 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) +21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 21: 21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -9363,24 +9398,24 @@ 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (6 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (4 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (7 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (11 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (3 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (3 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (39 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -9400,9 +9435,9 @@ 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (9 ms total) +21: [==========] 325 tests from 52 test cases ran. (112 ms total) 21: [ PASSED ] 325 tests. -21/40 Test #21: UtilityUnitTests ................. Passed 0.03 sec +21/40 Test #21: UtilityUnitTests ................. Passed 0.17 sec test 22 Start 22: UtilityMpiUnitTests @@ -9412,15 +9447,15 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (14 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (1 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (2 ms total) +22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (39 ms) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (55 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (2 ms total) +22: [==========] 2 tests from 1 test case ran. (55 ms total) 22: [ PASSED ] 2 tests. -22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.02 sec +22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.09 sec test 23 Start 23: FileIOTests @@ -9488,26 +9523,26 @@ 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile -23: [ OK ] TngTest.CanOpenTngFile (0 ms) +23: [ OK ] TngTest.CanOpenTngFile (1 ms) 23: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 23: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -23: [----------] 2 tests from TngTest (0 ms total) +23: [----------] 2 tests from TngTest (1 ms total) 23: 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (4 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 17 tests from 4 test cases ran. (7 ms total) 23: [ PASSED ] 17 tests. -23/40 Test #23: FileIOTests ...................... Passed 0.02 sec +23/40 Test #23: FileIOTests ...................... Passed 0.04 sec test 24 Start 24: PullTest @@ -9541,44 +9576,44 @@ 25: [----------] Global test environment set-up. 25: [----------] 1 test from BiasTest 25: [ RUN ] BiasTest.DetectsCovering -25: [ OK ] BiasTest.DetectsCovering (1 ms) -25: [----------] 1 test from BiasTest (1 ms total) +25: [ OK ] BiasTest.DetectsCovering (0 ms) +25: [----------] 1 test from BiasTest (0 ms total) 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (1 ms) -25: [----------] 1 test from gridTest (1 ms total) +25: [ OK ] gridTest.neighborhood (2 ms) +25: [----------] 1 test from gridTest (2 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (4 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (2 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) -25: [----------] 8 tests from WithParameters/BiasTest (3 ms total) +25: [----------] 8 tests from WithParameters/BiasTest (13 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) +25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (11 ms) 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) -25: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) +25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) +25: [----------] 2 tests from WithParameters/BiasStateTest (12 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (5 ms total) +25: [==========] 12 tests from 4 test cases ran. (28 ms total) 25: [ PASSED ] 12 tests. -25/40 Test #25: AwhTest .......................... Passed 0.01 sec +25/40 Test #25: AwhTest .......................... Passed 0.04 sec test 26 Start 26: SimdUnitTests @@ -9715,7 +9750,7 @@ 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 26: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping -26: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (0 ms) +26: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (1 ms) 26: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 26: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 @@ -9732,7 +9767,7 @@ 26: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 26: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) -26: [----------] 16 tests from SimdFloatingpointUtilTest (0 ms total) +26: [----------] 16 tests from SimdFloatingpointUtilTest (1 ms total) 26: 26: [----------] 3 tests from SimdVectorOperationsTest 26: [ RUN ] SimdVectorOperationsTest.iprod @@ -9747,11 +9782,11 @@ 26: [ RUN ] SimdMathTest.copysign 26: [ OK ] SimdMathTest.copysign (0 ms) 26: [ RUN ] SimdMathTest.invsqrt -26: [ OK ] SimdMathTest.invsqrt (1 ms) +26: [ OK ] SimdMathTest.invsqrt (0 ms) 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair -26: [ OK ] SimdMathTest.invsqrtPair (0 ms) +26: [ OK ] SimdMathTest.invsqrtPair (1 ms) 26: [ RUN ] SimdMathTest.sqrt 26: [ OK ] SimdMathTest.sqrt (0 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe @@ -9763,78 +9798,78 @@ 26: [ RUN ] SimdMathTest.log 26: [ OK ] SimdMathTest.log (1 ms) 26: [ RUN ] SimdMathTest.exp2 -26: [ OK ] SimdMathTest.exp2 (2 ms) +26: [ OK ] SimdMathTest.exp2 (5 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe -26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) +26: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 26: [ RUN ] SimdMathTest.exp 26: [ OK ] SimdMathTest.exp (3 ms) 26: [ RUN ] SimdMathTest.expUnsafe -26: [ OK ] SimdMathTest.expUnsafe (1 ms) +26: [ OK ] SimdMathTest.expUnsafe (0 ms) 26: [ RUN ] SimdMathTest.erf -26: [ OK ] SimdMathTest.erf (0 ms) +26: [ OK ] SimdMathTest.erf (1 ms) 26: [ RUN ] SimdMathTest.erfc -26: [ OK ] SimdMathTest.erfc (1 ms) +26: [ OK ] SimdMathTest.erfc (2 ms) 26: [ RUN ] SimdMathTest.sin -26: [ OK ] SimdMathTest.sin (2 ms) +26: [ OK ] SimdMathTest.sin (1 ms) 26: [ RUN ] SimdMathTest.cos -26: [ OK ] SimdMathTest.cos (1 ms) +26: [ OK ] SimdMathTest.cos (2 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (6 ms) +26: [ OK ] SimdMathTest.tan (9 ms) 26: [ RUN ] SimdMathTest.asin 26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos -26: [ OK ] SimdMathTest.acos (1 ms) +26: [ OK ] SimdMathTest.acos (0 ms) 26: [ RUN ] SimdMathTest.atan -26: [ OK ] SimdMathTest.atan (0 ms) +26: [ OK ] SimdMathTest.atan (1 ms) 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection 26: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy 26: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy 26: [ OK ] SimdMathTest.invSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy -26: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy 26: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy -26: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.expSingleAccuracy (6 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy 26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy -26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy 26: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (7 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy -26: [ OK ] SimdMathTest.acosSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -26: [----------] 45 tests from SimdMathTest (46 ms total) +26: [----------] 45 tests from SimdMathTest (63 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -10011,7 +10046,7 @@ 26: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 26: [ RUN ] Simd4FloatingpointTest.transpose 26: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -26: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) +26: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) 26: 26: [----------] 1 test from Simd4VectorOperationsTest 26: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -10020,10 +10055,10 @@ 26: 26: [----------] 2 tests from Simd4MathTest 26: [ RUN ] Simd4MathTest.invsqrt -26: [ OK ] Simd4MathTest.invsqrt (1 ms) +26: [ OK ] Simd4MathTest.invsqrt (0 ms) 26: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy 26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) -26: [----------] 2 tests from Simd4MathTest (1 ms total) +26: [----------] 2 tests from Simd4MathTest (0 ms total) 26: 26: [----------] 41 tests from SimdScalarTest 26: [ RUN ] SimdScalarTest.load @@ -10108,7 +10143,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (0 ms total) +26: [----------] 41 tests from SimdScalarTest (1 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -10207,9 +10242,9 @@ 26: [----------] 37 tests from SimdScalarMathTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 277 tests from 22 test cases ran. (47 ms total) +26: [==========] 277 tests from 22 test cases ran. (66 ms total) 26: [ PASSED ] 277 tests. -26/40 Test #26: SimdUnitTests .................... Passed 0.06 sec +26/40 Test #26: SimdUnitTests .................... Passed 0.09 sec test 27 Start 27: CompatibilityHelpersTests @@ -10260,16 +10295,16 @@ 28: [----------] Global test environment set-up. 28: [----------] 5 tests from Entropy 28: [ RUN ] Entropy.Schlitter_300_NoLinear -28: [ OK ] Entropy.Schlitter_300_NoLinear (0 ms) +28: [ OK ] Entropy.Schlitter_300_NoLinear (4 ms) 28: [ RUN ] Entropy.Schlitter_300_Linear -28: [ OK ] Entropy.Schlitter_300_Linear (0 ms) +28: [ OK ] Entropy.Schlitter_300_Linear (4 ms) 28: [ RUN ] Entropy.QuasiHarmonic_300_NoLinear -28: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (0 ms) +28: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (4 ms) 28: [ RUN ] Entropy.QuasiHarmonic_200_NoLinear -28: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (0 ms) +28: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (3 ms) 28: [ RUN ] Entropy.QuasiHarmonic_200_Linear -28: [ OK ] Entropy.QuasiHarmonic_200_Linear (0 ms) -28: [----------] 5 tests from Entropy (0 ms total) +28: [ OK ] Entropy.QuasiHarmonic_200_Linear (4 ms) +28: [----------] 5 tests from Entropy (20 ms total) 28: 28: [----------] 3 tests from MsdTest 28: [ RUN ] MsdTest.threeDimensionalDiffusion @@ -10284,7 +10319,7 @@ 28: Fitting from 1 to 8 ps 28: 28: D[ particles] 4.0000 (+/- 0.0000) 1e-5 cm^2/s -28: [ OK ] MsdTest.threeDimensionalDiffusion (1 ms) +28: [ OK ] MsdTest.threeDimensionalDiffusion (15 ms) 28: [ RUN ] MsdTest.twoDimensionalDiffusion 28: 28: Select a group to calculate mean squared displacement for: @@ -10297,7 +10332,7 @@ 28: Fitting from 1 to 8 ps 28: 28: D[ particles] 6.0000 (+/- 0.0000) 1e-5 cm^2/s -28: [ OK ] MsdTest.twoDimensionalDiffusion (0 ms) +28: [ OK ] MsdTest.twoDimensionalDiffusion (2 ms) 28: [ RUN ] MsdTest.oneDimensionalDiffusion 28: 28: Select a group to calculate mean squared displacement for: @@ -10310,8 +10345,8 @@ 28: Fitting from 1 to 8 ps 28: 28: D[ particles] 8.0000 (+/- 0.0000) 1e-5 cm^2/s -28: [ OK ] MsdTest.oneDimensionalDiffusion (1 ms) -28: [----------] 3 tests from MsdTest (3 ms total) +28: [ OK ] MsdTest.oneDimensionalDiffusion (8 ms) +28: [----------] 3 tests from MsdTest (25 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -10321,7 +10356,7 @@ 28: Select a group: trr version: GMX_trn_file (single precision) 28: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (7 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -10335,7 +10370,7 @@ 28: Group 2 ( SOL) has 6 elements 28: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (15 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -10351,15 +10386,15 @@ 28: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 28: Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (3 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements 28: Group 2 ( SOL) has 6 elements 28: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (9 ms total) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (1 ms) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (30 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 @@ -10371,7 +10406,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (5 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (14 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -10383,7 +10418,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (5 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (20 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -10406,7 +10441,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (12 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -10419,7 +10454,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (7 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -10429,8 +10464,8 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (2 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (18 ms total) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (7 ms) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (62 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -10454,7 +10489,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (0 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -10464,7 +10499,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (9 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -10477,7 +10512,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (0 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -10490,7 +10525,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -10500,13 +10535,13 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (3 ms total) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (13 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 26 tests from 5 test cases ran. (33 ms total) +28: [==========] 26 tests from 5 test cases ran. (150 ms total) 28: [ PASSED ] 26 tests. -28/40 Test #28: GmxAnaTest ....................... Passed 0.05 sec +28/40 Test #28: GmxAnaTest ....................... Passed 0.20 sec test 29 Start 29: GmxPreprocessTests @@ -10516,11 +10551,11 @@ 29: [----------] Global test environment set-up. 29: [----------] 4 tests from GenconfTest 29: [ RUN ] GenconfTest.nbox_Works -29: [ OK ] GenconfTest.nbox_Works (1 ms) +29: [ OK ] GenconfTest.nbox_Works (27 ms) 29: [ RUN ] GenconfTest.nbox_norenumber_Works -29: [ OK ] GenconfTest.nbox_norenumber_Works (0 ms) +29: [ OK ] GenconfTest.nbox_norenumber_Works (5 ms) 29: [ RUN ] GenconfTest.nbox_dist_Works -29: [ OK ] GenconfTest.nbox_dist_Works (1 ms) +29: [ OK ] GenconfTest.nbox_dist_Works (4 ms) 29: [ RUN ] GenconfTest.nbox_rot_Works 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 @@ -10534,8 +10569,8 @@ 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 -29: [ OK ] GenconfTest.nbox_rot_Works (1 ms) -29: [----------] 4 tests from GenconfTest (3 ms total) +29: [ OK ] GenconfTest.nbox_rot_Works (12 ms) +29: [----------] 4 tests from GenconfTest (48 ms total) 29: 29: [----------] 5 tests from InsertMoleculesTest 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration @@ -10566,7 +10601,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 29: 29: Output configuration contains 8 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (2 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (4 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 29: Initialising inter-atomic distances... 29: @@ -10598,7 +10633,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 29: 29: Output configuration contains 10 atoms in 10 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (2 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (3 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 29: Reading solute configuration 29: Initialising inter-atomic distances... @@ -10628,7 +10663,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 29: 29: Output configuration contains 10 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (2 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (18 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 29: Reading solute configuration 29: Initialising inter-atomic distances... @@ -10661,7 +10696,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 29: 29: Output configuration contains 632 atoms in 212 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (10 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (59 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 29: Initialising inter-atomic distances... 29: @@ -10694,8 +10729,8 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 29: 29: Output configuration contains 6 atoms in 3 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (2 ms) -29: [----------] 5 tests from InsertMoleculesTest (18 ms total) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (9 ms) +29: [----------] 5 tests from InsertMoleculesTest (94 ms total) 29: 29: [----------] 12 tests from GetIrTest 29: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -10708,9 +10743,9 @@ 29: 29: Ignoring obsolete mdp entry 'title' 29: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' -29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (3 ms) +29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (4 ms) 29: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme -29: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (2 ms) +29: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (4 ms) 29: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]: @@ -10719,7 +10754,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (2 ms) +29: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (9 ms) 29: [ RUN ] GetIrTest.DefineHandlesAssignmentOnRhs 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp, line 2]: @@ -10728,7 +10763,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (2 ms) +29: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (11 ms) 29: [ RUN ] GetIrTest.EmptyInputWorks 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]: @@ -10737,7 +10772,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.EmptyInputWorks (1 ms) +29: [ OK ] GetIrTest.EmptyInputWorks (17 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricField 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]: @@ -10746,7 +10781,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricField (2 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricField (12 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: @@ -10755,7 +10790,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (2 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (12 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]: @@ -10764,9 +10799,9 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (2 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (16 ms) 29: [ RUN ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys -29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (2 ms) +29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (8 ms) 29: [ RUN ] GetIrTest.ImplicitSolventNoWorks 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ImplicitSolventNoWorks_input.mdp, line 2]: @@ -10775,9 +10810,9 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ImplicitSolventNoWorks (2 ms) +29: [ OK ] GetIrTest.ImplicitSolventNoWorks (8 ms) 29: [ RUN ] GetIrTest.ImplicitSolventYesWorks -29: [ OK ] GetIrTest.ImplicitSolventYesWorks (3 ms) +29: [ OK ] GetIrTest.ImplicitSolventYesWorks (20 ms) 29: [ RUN ] GetIrTest.HandlesMimic 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesMimic_input.mdp, line 3]: @@ -10786,8 +10821,8 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.HandlesMimic (3 ms) -29: [----------] 12 tests from GetIrTest (26 ms total) +29: [ OK ] GetIrTest.HandlesMimic (8 ms) +29: [----------] 12 tests from GetIrTest (129 ms total) 29: 29: [----------] 5 tests from SolvateTest 29: [ RUN ] SolvateTest.cs_box_Works @@ -10827,7 +10862,7 @@ 29: Density : 1056.36 (g/l) 29: Number of solvent molecules: 47 29: -29: [ OK ] SolvateTest.cs_box_Works (10 ms) +29: [ OK ] SolvateTest.cs_box_Works (79 ms) 29: [ RUN ] SolvateTest.cs_cp_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -10867,7 +10902,7 @@ 29: Density : 974.777 (g/l) 29: Number of solvent molecules: 886 29: -29: [ OK ] SolvateTest.cs_cp_Works (42 ms) +29: [ OK ] SolvateTest.cs_cp_Works (104 ms) 29: [ RUN ] SolvateTest.cs_cp_p_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -10909,7 +10944,7 @@ 29: 29: Processing topology 29: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top) -29: [ OK ] SolvateTest.cs_cp_p_Works (39 ms) +29: [ OK ] SolvateTest.cs_cp_p_Works (100 ms) 29: [ RUN ] SolvateTest.shell_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -10950,7 +10985,7 @@ 29: Density : 279.3 (g/l) 29: Number of solvent molecules: 252 29: -29: [ OK ] SolvateTest.shell_Works (20 ms) +29: [ OK ] SolvateTest.shell_Works (54 ms) 29: [ RUN ] SolvateTest.update_Topology_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -10994,13 +11029,13 @@ 29: Processing topology 29: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 29: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -29: [ OK ] SolvateTest.update_Topology_Works (202 ms) -29: [----------] 5 tests from SolvateTest (313 ms total) +29: [ OK ] SolvateTest.update_Topology_Works (329 ms) +29: [----------] 5 tests from SolvateTest (666 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 26 tests from 4 test cases ran. (360 ms total) +29: [==========] 26 tests from 4 test cases ran. (937 ms total) 29: [ PASSED ] 26 tests. -29/40 Test #29: GmxPreprocessTests ............... Passed 0.38 sec +29/40 Test #29: GmxPreprocessTests ............... Passed 0.98 sec test 30 Start 30: Pdb2gmxTest @@ -11070,7 +11105,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (327 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (960 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11133,7 +11168,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (292 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (985 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11194,7 +11229,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (273 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (679 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11255,7 +11290,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (321 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (393 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11320,7 +11355,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (333 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (563 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11386,7 +11421,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (327 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (751 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11450,7 +11485,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (340 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (993 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11514,7 +11549,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (339 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (843 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11576,7 +11611,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (272 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (836 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11639,7 +11674,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (301 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (981 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11700,7 +11735,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (348 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (620 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11761,7 +11796,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (301 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (682 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11826,7 +11861,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (376 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (567 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11892,7 +11927,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (400 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (529 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11956,7 +11991,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (382 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (514 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12020,7 +12055,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (270 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (810 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12082,7 +12117,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (273 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (498 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12145,7 +12180,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (374 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (494 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12206,7 +12241,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (334 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (462 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12267,7 +12302,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (248 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (403 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12332,7 +12367,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (293 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (514 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12398,7 +12433,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (330 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (538 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12462,7 +12497,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (336 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (738 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12526,8 +12561,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (348 ms) -30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (7738 ms total) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (938 ms) +30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (16297 ms total) 30: 30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -12606,7 +12641,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (147 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (522 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12684,7 +12719,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (167 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (298 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12760,7 +12795,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (142 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (236 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12836,7 +12871,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (132 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (214 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12916,7 +12951,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (177 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (239 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12997,7 +13032,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (230 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (286 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13076,7 +13111,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (193 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (238 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13155,7 +13190,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (137 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (212 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13232,7 +13267,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (140 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (214 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13310,7 +13345,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (164 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (252 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13386,7 +13421,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (143 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (222 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13462,7 +13497,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (131 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (236 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13542,7 +13577,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (147 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (231 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13623,7 +13658,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (182 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (276 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13702,7 +13737,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (150 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (257 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13781,8 +13816,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (138 ms) -30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (2520 ms total) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (264 ms) +30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (4197 ms total) 30: 30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -13865,7 +13900,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (148 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (245 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -13947,7 +13982,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (171 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (431 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14027,7 +14062,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (156 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (470 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14107,7 +14142,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (180 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (350 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14191,7 +14226,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (201 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (246 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14276,7 +14311,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (199 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (298 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14359,7 +14394,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (172 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (305 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14442,7 +14477,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (152 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (390 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14523,7 +14558,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (153 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (240 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14605,7 +14640,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (212 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (279 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14685,7 +14720,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (192 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (246 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14765,7 +14800,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (177 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (261 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14849,7 +14884,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (155 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (392 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14934,7 +14969,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (185 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (293 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -15017,7 +15052,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (157 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (441 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -15100,8 +15135,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (146 ms) -30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (2756 ms total) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (230 ms) +30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (5118 ms total) 30: 30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -15178,7 +15213,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (356 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (462 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15254,7 +15289,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (347 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (521 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15328,7 +15363,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (283 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (449 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15402,7 +15437,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (252 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (712 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15480,7 +15515,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (295 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (729 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15559,7 +15594,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (327 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (580 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15636,7 +15671,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (308 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (434 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15713,8 +15748,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (273 ms) -30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (2442 ms total) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (497 ms) +30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (4384 ms total) 30: 30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -15800,7 +15835,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (271 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (516 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -15885,7 +15920,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (397 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (676 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -15968,7 +16003,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (330 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (348 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16051,7 +16086,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (331 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (504 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16138,7 +16173,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (313 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (579 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16226,7 +16261,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (330 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (1006 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16312,7 +16347,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (301 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (535 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16398,8 +16433,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (277 ms) -30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (2552 ms total) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (514 ms) +30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (4678 ms total) 30: 30: [----------] 8 tests from ChainSep/Pdb2gmxTest 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -16496,7 +16531,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (341 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (434 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16640,7 +16675,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (61 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (72 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16735,7 +16770,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (315 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (449 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16879,7 +16914,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (45 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (73 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16978,7 +17013,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (277 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (912 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -17148,7 +17183,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (47 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (119 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -17239,7 +17274,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (328 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (662 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -17356,13 +17391,13 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (61 ms) -30: [----------] 8 tests from ChainSep/Pdb2gmxTest (1477 ms total) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (133 ms) +30: [----------] 8 tests from ChainSep/Pdb2gmxTest (2856 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 80 tests from 6 test cases ran. (19486 ms total) +30: [==========] 80 tests from 6 test cases ran. (37533 ms total) 30: [ PASSED ] 80 tests. -30/40 Test #30: Pdb2gmxTest ...................... Passed 19.51 sec +30/40 Test #30: Pdb2gmxTest ...................... Passed 37.59 sec test 31 Start 31: CorrelationsTest @@ -17372,26 +17407,26 @@ 31: [----------] Global test environment set-up. 31: [----------] 10 tests from AutocorrTest 31: [ RUN ] AutocorrTest.EacNormal -31: [ OK ] AutocorrTest.EacNormal (65 ms) +31: [ OK ] AutocorrTest.EacNormal (163 ms) 31: [ RUN ] AutocorrTest.EacNoNormalize -31: [ OK ] AutocorrTest.EacNoNormalize (39 ms) +31: [ OK ] AutocorrTest.EacNoNormalize (68 ms) 31: [ RUN ] AutocorrTest.EacCos -31: [ OK ] AutocorrTest.EacCos (68 ms) +31: [ OK ] AutocorrTest.EacCos (136 ms) 31: [ RUN ] AutocorrTest.EacVector -31: [ OK ] AutocorrTest.EacVector (96 ms) +31: [ OK ] AutocorrTest.EacVector (200 ms) 31: [ RUN ] AutocorrTest.EacRcross -31: [ OK ] AutocorrTest.EacRcross (3 ms) +31: [ OK ] AutocorrTest.EacRcross (9 ms) 31: [ RUN ] AutocorrTest.EacP0 -31: [ OK ] AutocorrTest.EacP0 (129 ms) +31: [ OK ] AutocorrTest.EacP0 (203 ms) 31: [ RUN ] AutocorrTest.EacP1 -31: [ OK ] AutocorrTest.EacP1 (113 ms) +31: [ OK ] AutocorrTest.EacP1 (208 ms) 31: [ RUN ] AutocorrTest.EacP2 -31: [ OK ] AutocorrTest.EacP2 (212 ms) +31: [ OK ] AutocorrTest.EacP2 (424 ms) 31: [ RUN ] AutocorrTest.EacP3 -31: [ OK ] AutocorrTest.EacP3 (5 ms) +31: [ OK ] AutocorrTest.EacP3 (14 ms) 31: [ RUN ] AutocorrTest.EacP4 -31: [ OK ] AutocorrTest.EacP4 (91 ms) -31: [----------] 10 tests from AutocorrTest (822 ms total) +31: [ OK ] AutocorrTest.EacP4 (194 ms) +31: [----------] 10 tests from AutocorrTest (1619 ms total) 31: 31: [----------] 1 test from ManyAutocorrelationTest 31: [ RUN ] ManyAutocorrelationTest.Empty @@ -17399,9 +17434,9 @@ 31: [----------] 1 test from ManyAutocorrelationTest (0 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 11 tests from 2 test cases ran. (825 ms total) +31: [==========] 11 tests from 2 test cases ran. (1621 ms total) 31: [ PASSED ] 11 tests. -31/40 Test #31: CorrelationsTest ................. Passed 0.85 sec +31/40 Test #31: CorrelationsTest ................. Passed 1.64 sec test 32 Start 32: AnalysisDataUnitTests @@ -17422,43 +17457,43 @@ 32: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly -32: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 32: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) +32: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 32: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/0 (3 ms total) +32: [----------] 8 tests from AnalysisDataCommonTest/0 (4 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (9 ms) 32: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData 32: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/1 (4 ms total) +32: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) +32: [----------] 8 tests from AnalysisDataCommonTest/1 (13 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 32: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly @@ -17466,24 +17501,24 @@ 32: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks 32: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 32: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/2 (3 ms total) +32: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) +32: [----------] 8 tests from AnalysisDataCommonTest/2 (6 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (8 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks @@ -17492,7 +17527,7 @@ 32: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/3 (4 ms total) +32: [----------] 8 tests from AnalysisDataCommonTest/3 (13 ms total) 32: 32: [----------] 4 tests from AnalysisArrayDataTest 32: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly @@ -17507,25 +17542,25 @@ 32: 32: [----------] 6 tests from AverageModuleTest 32: [ RUN ] AverageModuleTest.BasicTest -32: [ OK ] AverageModuleTest.BasicTest (1 ms) +32: [ OK ] AverageModuleTest.BasicTest (7 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipointData -32: [ OK ] AverageModuleTest.HandlesMultipointData (0 ms) +32: [ OK ] AverageModuleTest.HandlesMultipointData (4 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipleDataSets -32: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) +32: [ OK ] AverageModuleTest.HandlesMultipleDataSets (8 ms) 32: [ RUN ] AverageModuleTest.HandlesDataSetAveraging 32: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 32: [ RUN ] AverageModuleTest.CanCustomizeXAxis -32: [ OK ] AverageModuleTest.CanCustomizeXAxis (0 ms) +32: [ OK ] AverageModuleTest.CanCustomizeXAxis (6 ms) 32: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis -32: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (0 ms) -32: [----------] 6 tests from AverageModuleTest (4 ms total) +32: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (8 ms) +32: [----------] 6 tests from AverageModuleTest (35 ms total) 32: 32: [----------] 2 tests from FrameAverageModuleTest 32: [ RUN ] FrameAverageModuleTest.BasicTest -32: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) +32: [ OK ] FrameAverageModuleTest.BasicTest (8 ms) 32: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -32: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (0 ms) -32: [----------] 2 tests from FrameAverageModuleTest (1 ms total) +32: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (12 ms) +32: [----------] 2 tests from FrameAverageModuleTest (21 ms total) 32: 32: [----------] 7 tests from AnalysisHistogramSettingsTest 32: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins @@ -17548,51 +17583,51 @@ 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll -32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) -32: [----------] 2 tests from SimpleHistogramModuleTest (2 ms total) +32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (7 ms) +32: [----------] 2 tests from SimpleHistogramModuleTest (8 ms total) 32: 32: [----------] 3 tests from WeightedHistogramModuleTest 32: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly -32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (1 ms) +32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (8 ms) 32: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll -32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) +32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (8 ms) 32: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets -32: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (1 ms) -32: [----------] 3 tests from WeightedHistogramModuleTest (3 ms total) +32: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (8 ms) +32: [----------] 3 tests from WeightedHistogramModuleTest (24 ms total) 32: 32: [----------] 3 tests from BinAverageModuleTest 32: [ RUN ] BinAverageModuleTest.ComputesCorrectly -32: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) +32: [ OK ] BinAverageModuleTest.ComputesCorrectly (8 ms) 32: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 32: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 32: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets -32: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (0 ms) -32: [----------] 3 tests from BinAverageModuleTest (3 ms total) +32: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (3 ms) +32: [----------] 3 tests from BinAverageModuleTest (12 ms total) 32: 32: [----------] 4 tests from AbstractAverageHistogramTest 32: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly 32: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (1 ms) 32: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram -32: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) +32: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (7 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth -32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (0 ms) +32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) -32: [----------] 4 tests from AbstractAverageHistogramTest (3 ms total) +32: [----------] 4 tests from AbstractAverageHistogramTest (10 ms total) 32: 32: [----------] 3 tests from LifetimeModuleTest 32: [ RUN ] LifetimeModuleTest.BasicTest 32: [ OK ] LifetimeModuleTest.BasicTest (1 ms) 32: [ RUN ] LifetimeModuleTest.CumulativeTest -32: [ OK ] LifetimeModuleTest.CumulativeTest (0 ms) +32: [ OK ] LifetimeModuleTest.CumulativeTest (1 ms) 32: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets 32: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (1 ms) -32: [----------] 3 tests from LifetimeModuleTest (2 ms total) +32: [----------] 3 tests from LifetimeModuleTest (3 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 69 tests from 14 test cases ran. (33 ms total) +32: [==========] 69 tests from 14 test cases ran. (150 ms total) 32: [ PASSED ] 69 tests. -32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.04 sec +32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.19 sec test 33 Start 33: SelectionUnitTests @@ -17607,19 +17642,19 @@ 33: 33: [----------] 15 tests from IndexBlockTest 33: [ RUN ] IndexBlockTest.CreatesUnknownBlock -33: [ OK ] IndexBlockTest.CreatesUnknownBlock (1 ms) +33: [ OK ] IndexBlockTest.CreatesUnknownBlock (7 ms) 33: [ RUN ] IndexBlockTest.CreatesAtomBlock -33: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) +33: [ OK ] IndexBlockTest.CreatesAtomBlock (44 ms) 33: [ RUN ] IndexBlockTest.CreatesResidueBlock 33: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlock -33: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms) +33: [ OK ] IndexBlockTest.CreatesMoleculeBlock (8 ms) 33: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion -33: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) +33: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (4 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion 33: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) 33: [ RUN ] IndexBlockTest.CreatesSingleBlock -33: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) +33: [ OK ] IndexBlockTest.CreatesSingleBlock (36 ms) 33: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 33: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 33: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive @@ -17636,52 +17671,52 @@ 33: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 33: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 33: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -33: [----------] 15 tests from IndexBlockTest (2 ms total) +33: [----------] 15 tests from IndexBlockTest (99 ms total) 33: 33: [----------] 11 tests from IndexMapTest 33: [ RUN ] IndexMapTest.InitializesAtomBlock -33: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) +33: [ OK ] IndexMapTest.InitializesAtomBlock (4 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom -33: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (4 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle -33: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (1 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (4 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue -33: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (4 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 33: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll -33: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (12 ms) 33: [ RUN ] IndexMapTest.InitializesMoleculeBlock -33: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) +33: [ OK ] IndexMapTest.InitializesMoleculeBlock (4 ms) 33: [ RUN ] IndexMapTest.MapsSingleBlock -33: [ OK ] IndexMapTest.MapsSingleBlock (1 ms) +33: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocks 33: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask -33: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms) +33: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (8 ms) 33: [ RUN ] IndexMapTest.HandlesMultipleRequests 33: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -33: [----------] 11 tests from IndexMapTest (4 ms total) +33: [----------] 11 tests from IndexMapTest (41 ms total) 33: 33: [----------] 15 tests from NeighborhoodSearchTest 33: [ RUN ] NeighborhoodSearchTest.SimpleSearch -33: [ OK ] NeighborhoodSearchTest.SimpleSearch (18 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearch (30 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (14 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (36 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchBox 33: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (9 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (23 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -33: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (9 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -33: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (6 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 33: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (41 ms) +33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (103 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 33: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -17691,59 +17726,59 @@ 33: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 33: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -33: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (8 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -33: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -33: [----------] 15 tests from NeighborhoodSearchTest (96 ms total) +33: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (5 ms) +33: [----------] 15 tests from NeighborhoodSearchTest (227 ms total) 33: 33: [----------] 12 tests from PositionCalculationTest 33: [ RUN ] PositionCalculationTest.ComputesAtomPositions -33: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) +33: [ OK ] PositionCalculationTest.ComputesAtomPositions (12 ms) 33: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -33: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) +33: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (8 ms) 33: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 33: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions -33: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms) +33: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (8 ms) 33: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions -33: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) +33: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (16 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) +33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (20 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionMask -33: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) +33: [ OK ] PositionCalculationTest.ComputesPositionMask (8 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms -33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) +33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (8 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) +33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (8 ms) 33: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations -33: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) +33: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (8 ms) 33: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations -33: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -33: [----------] 12 tests from PositionCalculationTest (2 ms total) +33: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (1 ms) +33: [----------] 12 tests from PositionCalculationTest (97 ms total) 33: 33: [----------] 30 tests from SelectionCollectionTest 33: [ RUN ] SelectionCollectionTest.HandlesNoSelections -33: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -33: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests -33: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 33: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 33: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) +33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (5 ms) 33: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 33: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions -33: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 -33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 @@ -17751,31 +17786,31 @@ 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference -33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 33: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -33: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (9 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 33: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation -33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 -33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 -33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 @@ -17783,8 +17818,8 @@ 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 -33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -33: [----------] 30 tests from SelectionCollectionTest (9 ms total) +33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (1 ms) +33: [----------] 30 tests from SelectionCollectionTest (27 ms total) 33: 33: [----------] 14 tests from SelectionCollectionInteractiveTest 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput @@ -17792,9 +17827,9 @@ 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 33: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput -33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (7 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput -33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 33: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections @@ -17802,104 +17837,104 @@ 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus -33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (6 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus -33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (4 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline -33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (7 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections -33: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (5 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput -33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (7 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -33: [----------] 14 tests from SelectionCollectionInteractiveTest (6 ms total) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (8 ms) +33: [----------] 14 tests from SelectionCollectionInteractiveTest (48 ms total) 33: 33: [----------] 66 tests from SelectionCollectionDataTest 33: [ RUN ] SelectionCollectionDataTest.HandlesAllNone -33: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAllNone (4 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -33: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResnr -33: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -33: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex -33: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (7 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomname -33: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomname (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname -33: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -33: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (7 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesChain -33: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMass 33: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesCharge -33: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesCharge (7 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc -33: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode 33: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 33: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBeta -33: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResname -33: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesResname (22 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords -33: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (9 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 33: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -33: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (7 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords -33: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (9 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 33: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -33: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 33: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -33: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (44 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (14 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (12 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -33: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (12 ms) 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) +33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (5 ms) 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (0 ms) +33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (4 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 33: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (6 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (7 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (17 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions -33: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (5 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -33: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 33: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching @@ -17907,56 +17942,56 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 33: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters -33: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 33: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame -33: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords -33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (9 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (16 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions -33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -33: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 33: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -33: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (4 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -33: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables -33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (7 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 33: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (8 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -33: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) -33: [----------] 66 tests from SelectionCollectionDataTest (43 ms total) +33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) +33: [----------] 66 tests from SelectionCollectionDataTest (332 ms total) 33: 33: [----------] 17 tests from SelectionOptionTest 33: [ RUN ] SelectionOptionTest.ParsesSimpleSelection -33: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) +33: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -33: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) +33: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 33: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 33: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired @@ -17966,54 +18001,54 @@ 33: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 33: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooManySelections -33: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) +33: [ OK ] SelectionOptionTest.HandlesTooManySelections (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 33: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText -33: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (1 ms) +33: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesAdjuster -33: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) +33: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 33: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 33: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster -33: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) +33: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 33: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections -33: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) +33: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 33: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster -33: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -33: [----------] 17 tests from SelectionOptionTest (4 ms total) +33: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms) +33: [----------] 17 tests from SelectionOptionTest (6 ms total) 33: 33: [----------] 9 tests from SelectionFileOptionTest 33: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 33: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions -33: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile -33: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (9 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 33: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) +33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 33: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -33: [----------] 9 tests from SelectionFileOptionTest (2 ms total) +33: [----------] 9 tests from SelectionFileOptionTest (11 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 190 tests from 10 test cases ran. (168 ms total) +33: [==========] 190 tests from 10 test cases ran. (888 ms total) 33: [ PASSED ] 190 tests. -33/40 Test #33: SelectionUnitTests ............... Passed 0.19 sec +33/40 Test #33: SelectionUnitTests ............... Passed 0.93 sec test 34 Start 34: TrajectoryAnalysisUnitTests @@ -18030,7 +18065,7 @@ 34: Total number of atoms in clusters = 24 34: cmid: 2, cmax: 4, max_size: 6 34: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (2 ms) +34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (16 ms) 34: [ RUN ] ClustsizeTest.NoMolShortCutoff 34: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 34: There is one group in the index @@ -18039,7 +18074,7 @@ 34: Total number of atoms in clusters = 24 34: cmid: 1, cmax: 6, max_size: 6 34: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (1 ms) +34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (8 ms) 34: [ RUN ] ClustsizeTest.MolDefaultCutoff 34: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -18048,7 +18083,7 @@ 34: Total number of atoms in clusters = 8 34: cmid: 2, cmax: 4, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 -34: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (1 ms) +34: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (9 ms) 34: [ RUN ] ClustsizeTest.MolShortCutoff 34: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -18066,12 +18101,12 @@ 34: Total number of atoms in clusters = 8 34: cmid: 2, cmax: 4, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 -34: 50%100%[ OK ] ClustsizeTest.MolCSize (1 ms) -34: [----------] 5 tests from ClustsizeTest (7 ms total) +34: 50%100%[ OK ] ClustsizeTest.MolCSize (6 ms) +34: [----------] 5 tests from ClustsizeTest (41 ms total) 34: 34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (6 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 34: Reading frames from gro file 'Test system', 8 atoms. 34: Reading frame 0 time 0.000 @@ -18090,7 +18125,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (3 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (10 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 34: Reading frames from gro file 'Test system', 8 atoms. 34: Reading frame 0 time 0.000 @@ -18107,10 +18142,10 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (2 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (4 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) -34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (7 ms total) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) +34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (21 ms total) 34: 34: [----------] 11 tests from AngleModuleTest 34: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -18129,7 +18164,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesSimpleAngles (2 ms) +34: [ OK ] AngleModuleTest.ComputesSimpleAngles (14 ms) 34: [ RUN ] AngleModuleTest.ComputesDihedrals 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18146,7 +18181,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesDihedrals (3 ms) +34: [ OK ] AngleModuleTest.ComputesDihedrals (8 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18163,7 +18198,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorPairAngles (3 ms) +34: [ OK ] AngleModuleTest.ComputesVectorPairAngles (9 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18180,7 +18215,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (2 ms) +34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (10 ms) 34: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18197,7 +18232,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (3 ms) +34: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (13 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18214,7 +18249,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (3 ms) +34: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (9 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 34: Reading frames from gro file 'Test system for different angles', 33 atoms. 34: Reading frame 0 time 0.000 @@ -18233,7 +18268,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (3 ms) +34: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (11 ms) 34: [ RUN ] AngleModuleTest.ComputesMultipleAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18250,7 +18285,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesMultipleAngles (2 ms) +34: [ OK ] AngleModuleTest.ComputesMultipleAngles (12 ms) 34: [ RUN ] AngleModuleTest.HandlesDynamicSelections 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18267,7 +18302,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.HandlesDynamicSelections (3 ms) +34: [ OK ] AngleModuleTest.HandlesDynamicSelections (5 ms) 34: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18284,7 +18319,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (3 ms) +34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (10 ms) 34: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18301,8 +18336,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (3 ms) -34: [----------] 11 tests from AngleModuleTest (30 ms total) +34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (13 ms) +34: [----------] 11 tests from AngleModuleTest (114 ms total) 34: 34: [----------] 3 tests from DistanceModuleTest 34: [ RUN ] DistanceModuleTest.ComputesDistances @@ -18325,7 +18360,7 @@ 34: Number of samples: 5 34: Average distance: 1.43246 nm 34: Standard deviation: 0.96700 nm -34: [ OK ] DistanceModuleTest.ComputesDistances (3 ms) +34: [ OK ] DistanceModuleTest.ComputesDistances (12 ms) 34: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18350,7 +18385,7 @@ 34: Number of samples: 4 34: Average distance: 1.81066 nm 34: Standard deviation: 0.79289 nm -34: [ OK ] DistanceModuleTest.ComputesMultipleDistances (3 ms) +34: [ OK ] DistanceModuleTest.ComputesMultipleDistances (12 ms) 34: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18371,8 +18406,8 @@ 34: Number of samples: 3 34: Average distance: 1.72076 nm 34: Standard deviation: 1.24839 nm -34: [ OK ] DistanceModuleTest.HandlesDynamicSelections (3 ms) -34: [----------] 3 tests from DistanceModuleTest (10 ms total) +34: [ OK ] DistanceModuleTest.HandlesDynamicSelections (15 ms) +34: [----------] 3 tests from DistanceModuleTest (40 ms total) 34: 34: [----------] 2 tests from FreeVolumeModuleTest 34: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -18436,7 +18471,7 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 34: Fractional free volume 0.194 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (98 ms) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (335 ms) 34: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -18488,8 +18523,8 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 34: Fractional free volume 0.200 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (103 ms) -34: [----------] 2 tests from FreeVolumeModuleTest (201 ms total) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (313 ms) +34: [----------] 2 tests from FreeVolumeModuleTest (648 ms total) 34: 34: [----------] 7 tests from PairDistanceModuleTest 34: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -18508,7 +18543,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesAllDistances (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesAllDistances (5 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18525,7 +18560,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (14 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18542,7 +18577,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (9 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18559,7 +18594,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (9 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18576,7 +18611,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (10 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18593,7 +18628,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (4 ms) +34: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (12 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18610,8 +18645,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (3 ms) -34: [----------] 7 tests from PairDistanceModuleTest (21 ms total) +34: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (9 ms) +34: [----------] 7 tests from PairDistanceModuleTest (68 ms total) 34: 34: [----------] 5 tests from RdfModuleTest 34: [ RUN ] RdfModuleTest.BasicTest @@ -18630,12 +18665,12 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.BasicTest (27 ms) +34: [ OK ] RdfModuleTest.BasicTest (73 ms) 34: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 34: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 34: Reading frame 0 time 0.000 Last frame 0 time 0.000 34: Analyzed 1 frames, last time 0.000 -34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (16 ms) +34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (41 ms) 34: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18652,7 +18687,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (23 ms) +34: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (36 ms) 34: [ RUN ] RdfModuleTest.CalculatesSurf 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18669,7 +18704,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.CalculatesSurf (13 ms) +34: [ OK ] RdfModuleTest.CalculatesSurf (20 ms) 34: [ RUN ] RdfModuleTest.CalculatesXY 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18686,8 +18721,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.CalculatesXY (25 ms) -34: [----------] 5 tests from RdfModuleTest (104 ms total) +34: [ OK ] RdfModuleTest.CalculatesXY (41 ms) +34: [----------] 5 tests from RdfModuleTest (211 ms total) 34: 34: [----------] 5 tests from SasaModuleTest 34: [ RUN ] SasaModuleTest.BasicTest @@ -18734,7 +18769,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.BasicTest (13 ms) +34: [ OK ] SasaModuleTest.BasicTest (19 ms) 34: [ RUN ] SasaModuleTest.HandlesSelectedResidues 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -18779,7 +18814,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesSelectedResidues (7 ms) +34: [ OK ] SasaModuleTest.HandlesSelectedResidues (12 ms) 34: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -18824,7 +18859,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (8 ms) +34: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (10 ms) 34: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -18869,7 +18904,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (8 ms) +34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (14 ms) 34: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -18914,8 +18949,8 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (9 ms) -34: [----------] 5 tests from SasaModuleTest (47 ms total) +34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (13 ms) +34: [----------] 5 tests from SasaModuleTest (72 ms total) 34: 34: [----------] 8 tests from SelectModuleTest 34: [ RUN ] SelectModuleTest.BasicTest @@ -18936,7 +18971,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.BasicTest (6 ms) +34: [ OK ] SelectModuleTest.BasicTest (11 ms) 34: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -18955,7 +18990,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (4 ms) +34: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (6 ms) 34: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -18974,7 +19009,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (4 ms) +34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (7 ms) 34: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -18993,7 +19028,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (4 ms) +34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (6 ms) 34: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -19012,7 +19047,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (4 ms) +34: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (7 ms) 34: [ RUN ] SelectModuleTest.NormalizesSizes 34: 34: WARNING: If there are molecules in the input trajectory file @@ -19029,7 +19064,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.NormalizesSizes (3 ms) +34: [ OK ] SelectModuleTest.NormalizesSizes (5 ms) 34: [ RUN ] SelectModuleTest.WritesResidueNumbers 34: 34: WARNING: If there are molecules in the input trajectory file @@ -19046,7 +19081,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.WritesResidueNumbers (3 ms) +34: [ OK ] SelectModuleTest.WritesResidueNumbers (5 ms) 34: [ RUN ] SelectModuleTest.WritesResidueIndices 34: 34: WARNING: If there are molecules in the input trajectory file @@ -19063,8 +19098,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.WritesResidueIndices (3 ms) -34: [----------] 8 tests from SelectModuleTest (31 ms total) +34: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) +34: [----------] 8 tests from SelectModuleTest (52 ms total) 34: 34: [----------] 10 tests from SurfaceAreaTest 34: [ RUN ] SurfaceAreaTest.ComputesSinglePoint @@ -19074,20 +19109,20 @@ 34: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius 34: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (1 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints12 -34: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) +34: [ OK ] SurfaceAreaTest.SurfacePoints12 (1 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints32 34: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints42 -34: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms) +34: [ OK ] SurfaceAreaTest.SurfacePoints42 (1 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints122 -34: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) +34: [ OK ] SurfaceAreaTest.SurfacePoints122 (2 ms) 34: [ RUN ] SurfaceAreaTest.Computes100Points 34: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC -34: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (2 ms) +34: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (3 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC -34: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (3 ms) -34: [----------] 10 tests from SurfaceAreaTest (10 ms total) +34: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (4 ms) +34: [----------] 10 tests from SurfaceAreaTest (15 ms total) 34: 34: [----------] 4 tests from TopologyInformation 34: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile @@ -19101,7 +19136,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TopologyInformation.WorksWithGroFile (4 ms) +34: [ OK ] TopologyInformation.WorksWithGroFile (6 ms) 34: [ RUN ] TopologyInformation.WorksWithPdbFile 34: 34: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19111,7 +19146,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TopologyInformation.WorksWithPdbFile (3 ms) +34: [ OK ] TopologyInformation.WorksWithPdbFile (5 ms) 34: [ RUN ] TopologyInformation.WorksWithTprFromPdbFile 34: 34: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary/TopologyInformation_WorksWithTprFromPdbFile_lysozyme.mdp, line 1]: @@ -19125,7 +19160,7 @@ 34: For a correct single-point energy evaluation with nsteps = 0, use 34: continuation = yes to avoid constraining the input coordinates. 34: -34: Setting the LD random seed to -1818574371 +34: Setting the LD random seed to -1254121953 34: Generated 330891 of the 330891 non-bonded parameter combinations 34: Generating 1-4 interactions: fudge = 0.5 34: Generated 330891 of the 330891 1-4 parameter combinations @@ -19160,8 +19195,8 @@ 34: There are: 10 Protein residues 34: Analysing Protein... 34: This run will generate roughly 0 Mb of data -34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (176 ms) -34: [----------] 4 tests from TopologyInformation (183 ms total) +34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (289 ms) +34: [----------] 4 tests from TopologyInformation (300 ms total) 34: 34: [----------] 4 tests from TrajectoryModuleTest 34: [ RUN ] TrajectoryModuleTest.BasicTest @@ -19182,7 +19217,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.BasicTest (3 ms) +34: [ OK ] TrajectoryModuleTest.BasicTest (5 ms) 34: [ RUN ] TrajectoryModuleTest.PlotsXOnly 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -19201,7 +19236,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.PlotsXOnly (3 ms) +34: [ OK ] TrajectoryModuleTest.PlotsXOnly (5 ms) 34: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -19220,7 +19255,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (2 ms) +34: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (4 ms) 34: [ RUN ] TrajectoryModuleTest.HandlesNoForces 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -19239,8 +19274,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.HandlesNoForces (3 ms) -34: [----------] 4 tests from TrajectoryModuleTest (11 ms total) +34: [ OK ] TrajectoryModuleTest.HandlesNoForces (5 ms) +34: [----------] 4 tests from TrajectoryModuleTest (19 ms total) 34: 34: [----------] 5 tests from UnionFinderTest 34: [ RUN ] UnionFinderTest.WorksEmpty @@ -19261,9 +19296,9 @@ 34: [----------] 1 test from MappedUnionFinderTest (0 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 74 tests from 14 test cases ran. (663 ms total) +34: [==========] 74 tests from 14 test cases ran. (1601 ms total) 34: [ PASSED ] 74 tests. -34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 0.68 sec +34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 1.64 sec test 35 Start 35: EnergyAnalysisUnitTests @@ -19280,8 +19315,8 @@ 35: 35: 35: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -35: [ OK ] DhdlTest.ExtractDhdl (14 ms) -35: [----------] 1 test from DhdlTest (15 ms total) +35: [ OK ] DhdlTest.ExtractDhdl (40 ms) +35: [----------] 1 test from DhdlTest (41 ms total) 35: 35: [----------] 1 test from OriresTest 35: [ RUN ] OriresTest.ExtractOrires @@ -19292,8 +19327,8 @@ 35: End your selection with 0 35: Selecting all 7 orientation restraints 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -35: [ OK ] OriresTest.ExtractOrires (6 ms) -35: [----------] 1 test from OriresTest (6 ms total) +35: [ OK ] OriresTest.ExtractOrires (71 ms) +35: [----------] 1 test from OriresTest (71 ms total) 35: 35: [----------] 3 tests from EnergyTest 35: [ RUN ] EnergyTest.ExtractEnergy @@ -19324,7 +19359,7 @@ 35: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 35: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 35: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) -35: [ OK ] EnergyTest.ExtractEnergy (2 ms) +35: [ OK ] EnergyTest.ExtractEnergy (4 ms) 35: [ RUN ] EnergyTest.ExtractEnergyByNumber 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: @@ -19353,7 +19388,7 @@ 35: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 35: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 35: Pres. DC -268.49 3 8.52175 13.2804 (bar) -35: [ OK ] EnergyTest.ExtractEnergyByNumber (2 ms) +35: [ OK ] EnergyTest.ExtractEnergyByNumber (9 ms) 35: [ RUN ] EnergyTest.ExtractEnergyMixed 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: @@ -19383,8 +19418,8 @@ 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 35: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -35: [ OK ] EnergyTest.ExtractEnergyMixed (2 ms) -35: [----------] 3 tests from EnergyTest (6 ms total) +35: [ OK ] EnergyTest.ExtractEnergyMixed (7 ms) +35: [----------] 3 tests from EnergyTest (21 ms total) 35: 35: [----------] 2 tests from ViscosityTest 35: [ RUN ] ViscosityTest.EinsteinViscosity @@ -19408,7 +19443,7 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosity (86 ms) +35: [ OK ] ViscosityTest.EinsteinViscosity (281 ms) 35: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -19430,13 +19465,13 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (71 ms) -35: [----------] 2 tests from ViscosityTest (157 ms total) +35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (249 ms) +35: [----------] 2 tests from ViscosityTest (530 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 7 tests from 4 test cases ran. (184 ms total) +35: [==========] 7 tests from 4 test cases ran. (663 ms total) 35: [ PASSED ] 7 tests. -35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.20 sec +35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.69 sec test 36 Start 36: ToolUnitTests @@ -19462,7 +19497,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to 1083923174 +36: Setting the LD random seed to 1495598137 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -19496,7 +19531,7 @@ 36: There are: 10 Protein residues 36: Analysing Protein... 36: This run will generate roughly 0 Mb of data -36: [ OK ] ReportMethodsTest.WritesCorrectInformation (176 ms) +36: [ OK ] ReportMethodsTest.WritesCorrectInformation (284 ms) 36: [ RUN ] ReportMethodsTest.ToolEndToEndTest 36: 36: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary/ReportMethodsTest_ToolEndToEndTest_lysozyme.mdp, line 1]: @@ -19510,7 +19545,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to -1554015643 +36: Setting the LD random seed to 169783993 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -19554,13 +19589,13 @@ 36: The Cut-off algorithm was used for electrostatic interactions. 36: with a cut-off of 1 nm. 36: A single cut-off of 1.1 nm was used for Van der Waals interactions. -36: [ OK ] ReportMethodsTest.ToolEndToEndTest (168 ms) -36: [----------] 4 tests from ReportMethodsTest (344 ms total) +36: [ OK ] ReportMethodsTest.ToolEndToEndTest (276 ms) +36: [----------] 4 tests from ReportMethodsTest (560 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 4 tests from 1 test case ran. (344 ms total) +36: [==========] 4 tests from 1 test case ran. (560 ms total) 36: [ PASSED ] 4 tests. -36/40 Test #36: ToolUnitTests .................... Passed 0.35 sec +36/40 Test #36: ToolUnitTests .................... Passed 0.59 sec test 37 Start 37: MdrunTests @@ -19582,7 +19617,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 663287655 +37: Setting the LD random seed to -2136787788 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -19606,8 +19641,8 @@ 37: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] GromppTest.EmptyMdpFileWorks (18 ms) -37: [----------] 1 test from GromppTest (18 ms total) +37: [ OK ] GromppTest.EmptyMdpFileWorks (48 ms) +37: [----------] 1 test from GromppTest (48 ms total) 37: 37: [----------] 1 test from ImdTest 37: [ RUN ] ImdTest.ImdCanRun @@ -19616,7 +19651,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to -330751097 +37: Setting the LD random seed to -1454740965 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -19655,7 +19690,7 @@ 37: IMD: Pulling from IMD remote is enabled (-imdpull). 37: IMD: Turning on IMD - port for incoming requests is 0. 37: IMD: Setting up incoming socket. -37: IMD: Listening for IMD connection on port 51917. +37: IMD: Listening for IMD connection on port 60031. 37: IMD: -imdwait not set, starting simulation. 37: starting mdrun 'spc2' 37: 2 steps, 0.0 ps. @@ -19669,11 +19704,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.005 0.003 195.7 +37: Time: 0.030 0.015 198.7 37: (ns/day) (hour/ns) -37: Performance: 380.027 0.063 -37: [ OK ] ImdTest.ImdCanRun (51 ms) -37: [----------] 1 test from ImdTest (51 ms total) +37: Performance: 68.293 0.351 +37: [ OK ] ImdTest.ImdCanRun (219 ms) +37: [----------] 1 test from ImdTest (219 ms total) 37: 37: [----------] 2 tests from PmeTest 37: [ RUN ] PmeTest.ReproducesEnergies @@ -19684,7 +19719,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1564396047 +37: Setting the LD random seed to 1071607725 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -19735,9 +19770,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.029 0.014 199.2 +37: Time: 0.080 0.040 199.5 37: (ns/day) (hour/ns) -37: Performance: 125.167 0.192 +37: Performance: 45.110 0.532 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). @@ -19762,9 +19797,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.028 0.014 199.2 +37: Time: 0.099 0.050 199.7 37: (ns/day) (hour/ns) -37: Performance: 129.808 0.185 +37: Performance: 36.548 0.657 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). @@ -19789,11 +19824,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.027 0.014 199.1 +37: Time: 0.082 0.041 199.6 37: (ns/day) (hour/ns) -37: Performance: 131.873 0.182 +37: Performance: 44.255 0.542 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (291 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (944 ms) 37: [ RUN ] PmeTest.ScalesTheBox 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -19807,7 +19842,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1319394436 +37: Setting the LD random seed to -777607698 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -19850,9 +19885,9 @@ 37: 0 steps, 0.0 ps. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.005 0.003 192.8 +37: Time: 0.006 0.003 192.3 37: (ns/day) (hour/ns) -37: Performance: 31.125 0.771 +37: Performance: 27.286 0.880 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 37: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -19861,8 +19896,8 @@ 37: Calculating fourier grid dimensions for X Y Z 37: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 37: This run will generate roughly 0 Mb of data -37: [ OK ] PmeTest.ScalesTheBox (621 ms) -37: [----------] 2 tests from PmeTest (912 ms total) +37: [ OK ] PmeTest.ScalesTheBox (1495 ms) +37: [----------] 2 tests from PmeTest (2440 ms total) 37: 37: [----------] 1 test from CompelTest 37: [ RUN ] CompelTest.SwapCanRun @@ -19871,7 +19906,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to -1250984514 +37: Setting the LD random seed to -494618247 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -19934,13 +19969,13 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 40 % of the run time was spent in pair search, +37: NOTE: 39 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.356 0.178 199.9 +37: Time: 1.047 0.524 200.0 37: (ns/day) (hour/ns) -37: Performance: 7.279 3.297 +37: Performance: 2.475 9.698 37: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). 37: The current CPU can measure timings more accurately than the code in @@ -19969,15 +20004,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 31 % of the run time was spent in pair search, +37: NOTE: 34 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.282 0.141 199.9 +37: Time: 0.660 0.330 199.9 37: (ns/day) (hour/ns) -37: Performance: 9.171 2.617 -37: [ OK ] CompelTest.SwapCanRun (717 ms) -37: [----------] 1 test from CompelTest (717 ms total) +37: Performance: 3.927 6.112 +37: [ OK ] CompelTest.SwapCanRun (1994 ms) +37: [----------] 1 test from CompelTest (1995 ms total) 37: 37: [----------] 6 tests from BondedInteractionsTest 37: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -19993,7 +20028,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 644961996 +37: Setting the LD random seed to -1873432515 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20036,15 +20071,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 18 % of the run time was spent in pair search, +37: NOTE: 17 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 192.0 +37: Time: 0.001 0.000 189.1 37: (ns/day) (hour/ns) -37: Performance: 274.953 0.087 +37: Performance: 238.727 0.101 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalBondWorks (6 ms) +37: [ OK ] BondedInteractionsTest.NormalBondWorks (37 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: @@ -20058,7 +20093,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -2033168317 +37: Setting the LD random seed to 1988577472 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20101,15 +20136,12 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 19 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 190.2 +37: Time: 0.009 0.005 198.5 37: (ns/day) (hour/ns) -37: Performance: 363.114 0.066 +37: Performance: 19.105 1.256 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedBondWorks (6 ms) +37: [ OK ] BondedInteractionsTest.TabulatedBondWorks (15 ms) 37: [ RUN ] BondedInteractionsTest.NormalAngleWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]: @@ -20123,7 +20155,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -293730705 +37: Setting the LD random seed to -1505515555 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20170,11 +20202,11 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 192.0 +37: Time: 0.001 0.000 190.9 37: (ns/day) (hour/ns) -37: Performance: 329.743 0.073 +37: Performance: 244.857 0.098 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalAngleWorks (5 ms) +37: [ OK ] BondedInteractionsTest.NormalAngleWorks (9 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: @@ -20188,7 +20220,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 2079753316 +37: Setting the LD random seed to 654550967 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20231,15 +20263,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 20 % of the run time was spent in pair search, +37: NOTE: 45 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 191.6 +37: Time: 0.001 0.001 193.3 37: (ns/day) (hour/ns) -37: Performance: 339.951 0.071 +37: Performance: 166.233 0.144 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (6 ms) +37: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (24 ms) 37: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]: @@ -20253,7 +20285,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1108669960 +37: Setting the LD random seed to -80445727 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20291,11 +20323,11 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 191.7 +37: Time: 0.001 0.000 190.8 37: (ns/day) (hour/ns) -37: Performance: 335.544 0.072 +37: Performance: 217.389 0.110 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalDihedralWorks (5 ms) +37: [ OK ] BondedInteractionsTest.NormalDihedralWorks (16 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]: @@ -20309,7 +20341,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -201162808 +37: Setting the LD random seed to 363268618 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20343,16 +20375,16 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 33 % of the run time was spent in pair search, +37: NOTE: 28 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 193.1 +37: Time: 0.001 0.000 190.7 37: (ns/day) (hour/ns) -37: Performance: 284.672 0.084 +37: Performance: 227.060 0.106 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (7 ms) -37: [----------] 6 tests from BondedInteractionsTest (35 ms total) +37: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (10 ms) +37: [----------] 6 tests from BondedInteractionsTest (112 ms total) 37: 37: [----------] 2 tests from MdrunTerminationTest 37: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -20363,7 +20395,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1771179636 +37: Setting the LD random seed to -137899870 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20399,20 +20431,20 @@ 37: starting mdrun 'spc2' 37: 100 steps, 0.1 ps. 37: -37: Step 4: Run time exceeded 0.000 hours, will terminate the run within 2 steps +37: Step 1: Run time exceeded 0.000 hours, will terminate the run within 2 steps 37: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 37: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data 37: -37: NOTE: 11 % of the run time was spent in pair search, +37: NOTE: 12 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 194.1 +37: Time: 0.004 0.002 193.9 37: (ns/day) (hour/ns) -37: Performance: 296.270 0.081 +37: Performance: 120.555 0.199 37: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). 37: The current CPU can measure timings more accurately than the code in @@ -20433,15 +20465,15 @@ 37: This can lead to significant performance degradation. 37: Consider using -pin on (and -pinoffset in case you run multiple jobs). 37: starting mdrun 'spc2' -37: 7 steps, 0.0 ps (continuing from step 5, 0.0 ps). +37: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps). 37: 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 192.4 +37: Time: 0.013 0.006 197.3 37: (ns/day) (hour/ns) -37: Performance: 188.221 0.128 -37: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (10 ms) +37: Performance: 40.117 0.598 +37: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (24 ms) 37: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp, line 6]: @@ -20450,7 +20482,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 889134191 +37: Setting the LD random seed to -459522838 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20486,17 +20518,20 @@ 37: starting mdrun 'spc2' 37: 100 steps, 0.1 ps. 37: -37: Step 6: Run time exceeded 0.000 hours, will terminate the run within 2 steps +37: Step 3: Run time exceeded 0.000 hours, will terminate the run within 2 steps 37: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 37: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data 37: +37: NOTE: 10 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 193.3 +37: Time: 0.003 0.002 192.8 37: (ns/day) (hour/ns) -37: Performance: 434.192 0.055 +37: Performance: 242.108 0.099 37: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). 37: The current CPU can measure timings more accurately than the code in @@ -20518,17 +20553,17 @@ 37: This can lead to significant performance degradation. 37: Consider using -pin on (and -pinoffset in case you run multiple jobs). 37: starting mdrun 'spc2' -37: 9 steps, 0.0 ps (continuing from step 7, 0.0 ps). +37: 6 steps, 0.0 ps (continuing from step 4, 0.0 ps). 37: Checkpoint file is from part 1, new output files will be suffixed '.part0002'. 37: 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 197.4 +37: Time: 0.003 0.002 197.3 37: (ns/day) (hour/ns) -37: Performance: 174.841 0.137 -37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (11 ms) -37: [----------] 2 tests from MdrunTerminationTest (21 ms total) +37: Performance: 148.337 0.162 +37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (18 ms) +37: [----------] 2 tests from MdrunTerminationTest (42 ms total) 37: 37: [----------] 4 tests from MimicTest 37: [ RUN ] MimicTest.OneQuantumMol @@ -20544,7 +20579,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 2070603272 +37: Setting the LD random seed to 1539395310 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -20586,16 +20621,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 34 % of the run time was spent in pair search, +37: NOTE: 36 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 193.4 +37: Time: 0.001 0.000 192.3 37: (ns/day) (hour/ns) -37: Performance: 229.942 0.104 +37: Performance: 269.233 0.089 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.OneQuantumMol (6 ms) +37: [ OK ] MimicTest.OneQuantumMol (9 ms) 37: [ RUN ] MimicTest.AllQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -20609,7 +20644,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1094415720 +37: Setting the LD random seed to -522903902 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -20651,16 +20686,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 35 % of the run time was spent in pair search, +37: NOTE: 40 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 193.1 +37: Time: 0.001 0.000 192.3 37: (ns/day) (hour/ns) -37: Performance: 246.858 0.097 +37: Performance: 233.047 0.103 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.AllQuantumMol (6 ms) +37: [ OK ] MimicTest.AllQuantumMol (9 ms) 37: [ RUN ] MimicTest.TwoQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -20674,7 +20709,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -262391461 +37: Setting the LD random seed to -29692259 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -20716,16 +20751,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 37 % of the run time was spent in pair search, +37: NOTE: 43 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 192.2 +37: Time: 0.001 0.000 192.6 37: (ns/day) (hour/ns) -37: Performance: 278.546 0.086 +37: Performance: 219.496 0.109 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.TwoQuantumMol (5 ms) +37: [ OK ] MimicTest.TwoQuantumMol (8 ms) 37: [ RUN ] MimicTest.BondCuts 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp, line 3]: @@ -20739,7 +20774,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -766084830 +37: Setting the LD random seed to 78566446 37: Generated 2211 of the 2211 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 2211 of the 2211 1-4 parameter combinations @@ -20781,25 +20816,25 @@ 37: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 32 % of the run time was spent in pair search, +37: NOTE: 25 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.001 195.4 +37: Time: 0.001 0.001 193.8 37: (ns/day) (hour/ns) -37: Performance: 167.772 0.143 +37: Performance: 164.722 0.146 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 37: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.BondCuts (15 ms) -37: [----------] 4 tests from MimicTest (32 ms total) +37: [ OK ] MimicTest.BondCuts (38 ms) +37: [----------] 4 tests from MimicTest (64 ms total) 37: 37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -37: Setting the LD random seed to 1845503838 +37: Setting the LD random seed to 1700569403 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20847,9 +20882,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 194.4 +37: Time: 0.012 0.006 197.3 37: (ns/day) (hour/ns) -37: Performance: 96.624 0.248 +37: Performance: 28.130 0.853 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -20864,9 +20899,9 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (7 ms) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (14 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -37: Setting the LD random seed to -1599881793 +37: Setting the LD random seed to -1488439279 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20914,9 +20949,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 193.7 +37: Time: 0.003 0.002 193.5 37: (ns/day) (hour/ns) -37: Performance: 95.895 0.250 +37: Performance: 95.806 0.251 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -20931,9 +20966,9 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (8 ms) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (11 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -37: Setting the LD random seed to -31878807 +37: Setting the LD random seed to 168395596 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20981,9 +21016,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 189.3 +37: Time: 0.011 0.006 197.0 37: (ns/day) (hour/ns) -37: Performance: 120.415 0.199 +37: Performance: 30.018 0.800 37: Reading frame 0 time 0.000 37: # Atoms 3 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -20998,8 +21033,8 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (7 ms) -37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (22 ms total) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (14 ms) +37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (39 ms total) 37: 37: [----------] 3 tests from Checking/InitialConstraintsTest 37: [ RUN ] Checking/InitialConstraintsTest.Works/0 @@ -21010,7 +21045,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1641347421 +37: Setting the LD random seed to 561599321 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21058,12 +21093,15 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 78 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 193.2 +37: Time: 0.018 0.009 198.4 37: (ns/day) (hour/ns) -37: Performance: 108.842 0.221 +37: Performance: 19.424 1.236 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (27 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (45 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: @@ -21072,7 +21110,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1972876376 +37: Setting the LD random seed to 419668678 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21121,11 +21159,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 193.1 +37: Time: 0.004 0.002 191.8 37: (ns/day) (hour/ns) -37: Performance: 111.917 0.214 +37: Performance: 83.193 0.288 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (27 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (38 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]: @@ -21139,7 +21177,7 @@ 37: Integrator method md-vv-avek is implemented primarily for validation 37: purposes; for molecular dynamics, you should probably be using md or md-vv 37: -37: Setting the LD random seed to -1693253987 +37: Setting the LD random seed to -1284332681 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21188,12 +21226,12 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 193.0 +37: Time: 0.004 0.002 193.8 37: (ns/day) (hour/ns) -37: Performance: 112.525 0.213 +37: Performance: 79.506 0.302 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (27 ms) -37: [----------] 3 tests from Checking/InitialConstraintsTest (81 ms total) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (36 ms) +37: [----------] 3 tests from Checking/InitialConstraintsTest (119 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/Trajectories 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 @@ -21204,7 +21242,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1930342040 +37: Setting the LD random seed to -1623342268 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21246,11 +21284,14 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 19 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.012 0.006 197.9 +37: Time: 0.040 0.020 199.2 37: (ns/day) (hour/ns) -37: Performance: 98.034 0.245 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (33 ms) +37: Performance: 30.349 0.791 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (60 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: @@ -21259,7 +21300,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -450735172 +37: Setting the LD random seed to -2045271484 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21302,10 +21343,10 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.013 0.006 197.8 +37: Time: 0.016 0.008 198.1 37: (ns/day) (hour/ns) -37: Performance: 94.270 0.255 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (33 ms) +37: Performance: 73.007 0.329 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (42 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: @@ -21314,7 +21355,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 638154036 +37: Setting the LD random seed to -1259778483 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21357,11 +21398,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.009 0.004 197.2 +37: Time: 0.011 0.006 196.8 37: (ns/day) (hour/ns) -37: Performance: 136.126 0.176 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (31 ms) -37: [----------] 3 tests from MdrunCanWrite/Trajectories (97 ms total) +37: Performance: 108.802 0.221 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (41 ms) +37: [----------] 3 tests from MdrunCanWrite/Trajectories (143 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/NptTrajectories 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 @@ -21372,7 +21413,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1182648924 +37: Setting the LD random seed to 1589992983 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21415,10 +21456,10 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 191.3 +37: Time: 0.004 0.002 154.4 37: (ns/day) (hour/ns) -37: Performance: 189.633 0.127 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (28 ms) +37: Performance: 113.935 0.211 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (41 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: @@ -21427,7 +21468,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -887607676 +37: Setting the LD random seed to 1754296795 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21470,10 +21511,10 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 190.8 +37: Time: 0.003 0.002 190.2 37: (ns/day) (hour/ns) -37: Performance: 191.133 0.126 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (27 ms) +37: Performance: 142.897 0.168 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (36 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: @@ -21482,7 +21523,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -674511837 +37: Setting the LD random seed to 1422812323 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21524,20 +21565,17 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 14 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 192.1 +37: Time: 0.005 0.003 191.7 37: (ns/day) (hour/ns) -37: Performance: 171.180 0.140 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (28 ms) -37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (83 ms total) +37: Performance: 103.402 0.232 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (37 ms) +37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (114 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 29 tests from 11 test cases ran. (2069 ms total) +37: [==========] 29 tests from 11 test cases ran. (5336 ms total) 37: [ PASSED ] 29 tests. -37/40 Test #37: MdrunTests ....................... Passed 2.09 sec +37/40 Test #37: MdrunTests ....................... Passed 5.38 sec test 38 Start 38: MdrunNonIntegratorTests @@ -21606,7 +21644,7 @@ 38: Norm of force = 8.7721828e+01 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (176 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (431 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -21670,7 +21708,7 @@ 38: Norm of force = 1.8452307e+02 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (207 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (482 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -21732,7 +21770,7 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (125 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (396 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -21801,7 +21839,7 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (121 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (356 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -21873,7 +21911,7 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (52 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (257 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -21952,8 +21990,8 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (49 ms) -38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (731 ms total) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (240 ms) +38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (2162 ms total) 38: 38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -22005,7 +22043,7 @@ 38: Norm of force = 1.6383933e+00 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (47 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (230 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -22058,7 +22096,7 @@ 38: Norm of force = 1.0525324e+00 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (46 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (212 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -22121,7 +22159,7 @@ 38: Norm of force = 1.0525324e+00 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (47 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (168 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -22182,7 +22220,7 @@ 38: Norm of force = 4.6227540e+03 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (111 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (313 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -22246,7 +22284,7 @@ 38: Norm of force = 3.6139019e+03 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (111 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (404 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -22320,8 +22358,8 @@ 38: Norm of force = 1.0198857e+04 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (114 ms) -38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (476 ms total) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (276 ms) +38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (1603 ms total) 38: 38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -22381,9 +22419,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 193.9 +38: Time: 0.004 0.002 193.4 38: (ns/day) (hour/ns) -38: Performance: 864.402 0.028 +38: Performance: 651.846 0.037 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -22406,18 +22444,18 @@ 38: trr version: GMX_trn_file (single precision) 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 23 % of the run time was spent in pair search, +38: NOTE: 29 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 195.5 +38: Time: 0.001 0.001 194.9 38: (ns/day) (hour/ns) -38: Performance: 1876.513 0.013 +38: Performance: 2015.901 0.012 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (97 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (336 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp, line 28]: @@ -22475,9 +22513,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 193.3 +38: Time: 0.083 0.042 199.5 38: (ns/day) (hour/ns) -38: Performance: 830.045 0.029 +38: Performance: 35.289 0.680 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -22499,18 +22537,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 34 % of the run time was spent in pair search, +38: NOTE: 52 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.001 0.001 195.2 +38: Time: 0.497 0.248 200.0 38: (ns/day) (hour/ns) -38: Performance: 2765.078 0.009 +38: Performance: 5.911 4.060 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (94 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (696 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp, line 28]: @@ -22564,9 +22602,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.1 +38: Time: 0.004 0.002 192.9 38: (ns/day) (hour/ns) -38: Performance: 764.152 0.031 +38: Performance: 705.843 0.034 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -22589,18 +22627,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 27 % of the run time was spent in pair search, +38: NOTE: 38 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.001 0.001 194.8 +38: Time: 0.002 0.001 194.2 38: (ns/day) (hour/ns) -38: Performance: 2438.873 0.010 +38: Performance: 1396.327 0.017 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (101 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (397 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp, line 28]: @@ -22653,13 +22691,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 17 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 196.4 +38: Time: 0.006 0.003 194.8 38: (ns/day) (hour/ns) -38: Performance: 541.305 0.044 +38: Performance: 504.058 0.048 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -22682,18 +22717,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 29 % of the run time was spent in pair search, +38: NOTE: 30 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.001 0.001 195.1 +38: Time: 0.001 0.001 194.5 38: (ns/day) (hour/ns) -38: Performance: 2329.147 0.010 +38: Performance: 1914.417 0.013 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (103 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (411 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp, line 28]: @@ -22759,9 +22794,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 193.2 +38: Time: 0.004 0.002 193.1 38: (ns/day) (hour/ns) -38: Performance: 874.587 0.027 +38: Performance: 783.990 0.031 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -22783,18 +22818,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 24 % of the run time was spent in pair search, +38: NOTE: 29 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.001 0.001 193.7 +38: Time: 0.002 0.001 195.2 38: (ns/day) (hour/ns) -38: Performance: 2186.158 0.011 +38: Performance: 1793.999 0.013 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (261 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (705 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp, line 28]: @@ -22860,9 +22895,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.3 +38: Time: 0.004 0.002 193.9 38: (ns/day) (hour/ns) -38: Performance: 814.140 0.029 +38: Performance: 700.465 0.034 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -22884,18 +22919,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 23 % of the run time was spent in pair search, +38: NOTE: 27 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.001 0.001 194.8 +38: Time: 0.001 0.001 194.9 38: (ns/day) (hour/ns) -38: Performance: 1991.142 0.012 +38: Performance: 2045.350 0.012 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (245 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (884 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp, line 28]: @@ -22957,9 +22992,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 193.3 +38: Time: 0.021 0.010 198.4 38: (ns/day) (hour/ns) -38: Performance: 833.526 0.029 +38: Performance: 141.708 0.169 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -22982,18 +23017,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 30 % of the run time was spent in pair search, +38: NOTE: 34 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.001 0.001 195.0 +38: Time: 0.002 0.001 195.2 38: (ns/day) (hour/ns) -38: Performance: 2205.726 0.011 +38: Performance: 1837.338 0.013 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (255 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (768 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp, line 28]: @@ -23057,7 +23092,7 @@ 38: Core t (s) Wall t (s) (%) 38: Time: 0.004 0.002 192.8 38: (ns/day) (hour/ns) -38: Performance: 709.419 0.034 +38: Performance: 667.526 0.036 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23080,18 +23115,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 24 % of the run time was spent in pair search, +38: NOTE: 23 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.001 0.001 195.0 +38: Time: 0.002 0.001 195.3 38: (ns/day) (hour/ns) -38: Performance: 2168.460 0.011 +38: Performance: 1827.527 0.013 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (242 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (900 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp, line 28]: @@ -23174,9 +23209,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.007 0.004 195.5 +38: Time: 0.082 0.041 199.4 38: (ns/day) (hour/ns) -38: Performance: 407.366 0.059 +38: Performance: 35.779 0.671 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23198,18 +23233,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 23 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.7 +38: Time: 0.002 0.001 196.6 38: (ns/day) (hour/ns) -38: Performance: 1240.804 0.019 +38: Performance: 1337.225 0.018 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (105 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (490 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp, line 28]: @@ -23292,9 +23327,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 197.0 +38: Time: 0.019 0.010 198.1 38: (ns/day) (hour/ns) -38: Performance: 300.356 0.080 +38: Performance: 154.277 0.156 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23316,18 +23351,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 21 % of the run time was spent in pair search, +38: NOTE: 24 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.8 +38: Time: 0.002 0.001 195.9 38: (ns/day) (hour/ns) -38: Performance: 1322.016 0.018 +38: Performance: 1461.935 0.016 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (117 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (356 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp, line 28]: @@ -23406,9 +23441,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.7 +38: Time: 0.015 0.007 196.4 38: (ns/day) (hour/ns) -38: Performance: 325.630 0.074 +38: Performance: 198.383 0.121 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23431,18 +23466,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 197.1 +38: Time: 0.002 0.001 195.8 38: (ns/day) (hour/ns) -38: Performance: 1150.008 0.021 +38: Performance: 1281.855 0.019 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (135 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (515 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp, line 28]: @@ -23521,9 +23556,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 196.5 +38: Time: 0.031 0.015 198.5 38: (ns/day) (hour/ns) -38: Performance: 249.114 0.096 +38: Performance: 94.810 0.253 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23546,19 +23581,19 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 24 % of the run time was spent in pair search, +38: NOTE: 23 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 197.2 +38: Time: 0.002 0.001 196.1 38: (ns/day) (hour/ns) -38: Performance: 1433.029 0.017 +38: Performance: 1327.142 0.018 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (123 ms) -38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (1878 ms total) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (488 ms) +38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (6947 ms total) 38: 38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -23629,9 +23664,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 194.4 +38: Time: 0.013 0.007 197.0 38: (ns/day) (hour/ns) -38: Performance: 292.151 0.082 +38: Performance: 214.356 0.112 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23653,18 +23688,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.1 +38: Time: 0.003 0.001 195.4 38: (ns/day) (hour/ns) -38: Performance: 1025.911 0.023 +38: Performance: 1132.670 0.021 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (115 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (473 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp, line 42]: @@ -23733,9 +23768,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.007 0.004 196.1 +38: Time: 0.062 0.031 199.3 38: (ns/day) (hour/ns) -38: Performance: 399.597 0.060 +38: Performance: 47.559 0.505 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23757,18 +23792,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.6 +38: Time: 0.003 0.001 195.6 38: (ns/day) (hour/ns) -38: Performance: 986.168 0.024 +38: Performance: 1030.544 0.023 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (109 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (444 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp, line 42]: @@ -23837,9 +23872,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 194.6 +38: Time: 0.015 0.008 196.4 38: (ns/day) (hour/ns) -38: Performance: 329.673 0.073 +38: Performance: 188.865 0.127 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23861,18 +23896,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.0 +38: Time: 0.003 0.002 195.4 38: (ns/day) (hour/ns) -38: Performance: 1090.757 0.022 +38: Performance: 822.729 0.029 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (109 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (440 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp, line 42]: @@ -23941,9 +23976,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.007 0.004 195.8 +38: Time: 0.031 0.015 198.4 38: (ns/day) (hour/ns) -38: Performance: 404.106 0.059 +38: Performance: 95.177 0.252 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -23965,18 +24000,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 22 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.5 +38: Time: 0.003 0.002 195.2 38: (ns/day) (hour/ns) -38: Performance: 1103.653 0.022 +38: Performance: 845.191 0.028 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (113 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (456 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp, line 42]: @@ -24045,9 +24080,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 196.2 +38: Time: 0.016 0.008 197.8 38: (ns/day) (hour/ns) -38: Performance: 335.526 0.072 +38: Performance: 181.879 0.132 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24069,18 +24104,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 14 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.5 +38: Time: 0.003 0.001 195.9 38: (ns/day) (hour/ns) -38: Performance: 752.301 0.032 +38: Performance: 1068.620 0.022 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (104 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (424 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp, line 42]: @@ -24149,9 +24184,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.1 +38: Time: 0.062 0.031 199.3 38: (ns/day) (hour/ns) -38: Performance: 324.020 0.074 +38: Performance: 47.496 0.505 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24173,18 +24208,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 72 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.1 +38: Time: 0.124 0.062 199.8 38: (ns/day) (hour/ns) -38: Performance: 949.976 0.025 +38: Performance: 23.748 1.011 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (116 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (506 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp, line 42]: @@ -24253,9 +24288,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.3 +38: Time: 0.014 0.007 196.9 38: (ns/day) (hour/ns) -38: Performance: 351.732 0.068 +38: Performance: 208.530 0.115 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24277,18 +24312,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 193.9 +38: Time: 0.002 0.001 194.5 38: (ns/day) (hour/ns) -38: Performance: 1007.456 0.024 +38: Performance: 1169.215 0.021 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (114 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (454 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp, line 42]: @@ -24357,9 +24392,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 195.9 +38: Time: 0.021 0.011 198.1 38: (ns/day) (hour/ns) -38: Performance: 366.440 0.065 +38: Performance: 139.430 0.172 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24381,18 +24416,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.2 +38: Time: 0.002 0.001 195.5 38: (ns/day) (hour/ns) -38: Performance: 1122.353 0.021 +38: Performance: 1153.237 0.021 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (111 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (432 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp, line 42]: @@ -24461,9 +24496,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.1 +38: Time: 0.016 0.008 197.2 38: (ns/day) (hour/ns) -38: Performance: 365.007 0.066 +38: Performance: 183.302 0.131 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24485,18 +24520,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 195.7 +38: Time: 0.003 0.001 195.3 38: (ns/day) (hour/ns) -38: Performance: 1028.480 0.023 +38: Performance: 1146.797 0.021 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (109 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (400 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp, line 42]: @@ -24565,9 +24600,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.0 +38: Time: 0.016 0.008 194.6 38: (ns/day) (hour/ns) -38: Performance: 341.591 0.070 +38: Performance: 182.261 0.132 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24589,18 +24624,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.2 +38: Time: 0.002 0.001 195.6 38: (ns/day) (hour/ns) -38: Performance: 969.104 0.025 +38: Performance: 1161.062 0.021 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (116 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (388 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp, line 42]: @@ -24669,9 +24704,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 195.5 +38: Time: 0.016 0.008 197.6 38: (ns/day) (hour/ns) -38: Performance: 382.147 0.063 +38: Performance: 181.322 0.132 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24693,18 +24728,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 195.3 +38: Time: 0.003 0.001 195.8 38: (ns/day) (hour/ns) -38: Performance: 1073.648 0.022 +38: Performance: 1052.913 0.023 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (106 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (427 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp, line 42]: @@ -24773,9 +24808,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.9 +38: Time: 0.014 0.007 196.9 38: (ns/day) (hour/ns) -38: Performance: 320.547 0.075 +38: Performance: 212.251 0.113 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24797,18 +24832,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 21 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.4 +38: Time: 0.004 0.002 196.0 38: (ns/day) (hour/ns) -38: Performance: 993.164 0.024 +38: Performance: 783.093 0.031 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (106 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (405 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp, line 42]: @@ -24877,9 +24912,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.6 +38: Time: 0.043 0.022 198.9 38: (ns/day) (hour/ns) -38: Performance: 318.163 0.075 +38: Performance: 68.156 0.352 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -24901,18 +24936,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 22 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 195.5 +38: Time: 0.003 0.002 194.7 38: (ns/day) (hour/ns) -38: Performance: 959.146 0.025 +38: Performance: 829.263 0.029 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (120 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (434 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp, line 42]: @@ -24980,13 +25015,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 11 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.4 +38: Time: 0.027 0.014 198.6 38: (ns/day) (hour/ns) -38: Performance: 316.398 0.076 +38: Performance: 108.128 0.222 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25008,18 +25040,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 77 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.2 +38: Time: 0.084 0.042 199.7 38: (ns/day) (hour/ns) -38: Performance: 1023.524 0.023 +38: Performance: 35.097 0.684 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (121 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (502 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp, line 42]: @@ -25087,10 +25119,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 48 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.4 +38: Time: 0.018 0.009 197.6 38: (ns/day) (hour/ns) -38: Performance: 320.681 0.075 +38: Performance: 160.294 0.150 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25116,14 +25151,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.3 +38: Time: 0.004 0.002 194.9 38: (ns/day) (hour/ns) -38: Performance: 979.115 0.025 +38: Performance: 743.494 0.032 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (105 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (441 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp, line 42]: @@ -25192,9 +25227,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.4 +38: Time: 0.015 0.007 197.1 38: (ns/day) (hour/ns) -38: Performance: 310.264 0.077 +38: Performance: 197.145 0.122 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25216,18 +25251,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 86 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 195.8 +38: Time: 0.026 0.013 199.1 38: (ns/day) (hour/ns) -38: Performance: 1002.375 0.024 +38: Performance: 111.166 0.216 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (109 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (455 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp, line 42]: @@ -25295,10 +25330,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 73 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.7 +38: Time: 0.164 0.082 199.8 38: (ns/day) (hour/ns) -38: Performance: 274.610 0.087 +38: Performance: 17.871 1.343 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25320,18 +25358,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 94 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 193.6 +38: Time: 0.049 0.025 199.6 38: (ns/day) (hour/ns) -38: Performance: 995.249 0.024 +38: Performance: 59.547 0.403 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (109 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (787 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp, line 42]: @@ -25399,13 +25437,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 11 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.4 +38: Time: 0.018 0.009 197.3 38: (ns/day) (hour/ns) -38: Performance: 318.904 0.075 +38: Performance: 159.361 0.151 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25427,18 +25462,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 22 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.0 +38: Time: 0.003 0.001 195.6 38: (ns/day) (hour/ns) -38: Performance: 1014.256 0.024 +38: Performance: 979.738 0.024 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (124 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (413 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp, line 42]: @@ -25507,9 +25542,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 194.6 +38: Time: 0.019 0.010 197.5 38: (ns/day) (hour/ns) -38: Performance: 343.687 0.070 +38: Performance: 154.138 0.156 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25531,18 +25566,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 195.9 +38: Time: 0.003 0.002 194.7 38: (ns/day) (hour/ns) -38: Performance: 1005.319 0.024 +38: Performance: 839.890 0.029 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (128 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (369 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp, line 42]: @@ -25611,9 +25646,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 196.6 +38: Time: 0.029 0.014 198.4 38: (ns/day) (hour/ns) -38: Performance: 336.700 0.071 +38: Performance: 102.128 0.235 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25635,18 +25670,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.7 +38: Time: 0.003 0.002 195.4 38: (ns/day) (hour/ns) -38: Performance: 860.418 0.028 +38: Performance: 875.209 0.027 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (113 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (381 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp, line 42]: @@ -25715,9 +25750,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.007 0.004 195.9 +38: Time: 0.020 0.010 197.6 38: (ns/day) (hour/ns) -38: Performance: 406.935 0.059 +38: Performance: 145.068 0.165 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25739,18 +25774,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 94 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 195.0 +38: Time: 0.049 0.024 199.5 38: (ns/day) (hour/ns) -38: Performance: 961.841 0.025 +38: Performance: 60.335 0.398 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (104 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (410 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp, line 42]: @@ -25818,10 +25853,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 45 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.2 +38: Time: 0.019 0.010 197.9 38: (ns/day) (hour/ns) -38: Performance: 300.195 0.080 +38: Performance: 153.547 0.156 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25843,18 +25881,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.4 +38: Time: 0.003 0.002 195.4 38: (ns/day) (hour/ns) -38: Performance: 933.989 0.026 +38: Performance: 909.581 0.026 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (105 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (368 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp, line 42]: @@ -25919,9 +25957,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.5 +38: Time: 0.032 0.016 198.5 38: (ns/day) (hour/ns) -38: Performance: 347.761 0.069 +38: Performance: 91.692 0.262 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -25944,18 +25982,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 22 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 195.5 +38: Time: 0.003 0.002 196.0 38: (ns/day) (hour/ns) -38: Performance: 1082.705 0.022 +38: Performance: 943.285 0.025 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (128 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (403 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp, line 42]: @@ -26020,9 +26058,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 197.3 +38: Time: 0.035 0.017 198.9 38: (ns/day) (hour/ns) -38: Performance: 330.008 0.073 +38: Performance: 84.560 0.284 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26045,18 +26083,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 21 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) 38: Time: 0.003 0.002 195.6 38: (ns/day) (hour/ns) -38: Performance: 976.477 0.025 +38: Performance: 897.261 0.027 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (142 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (426 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp, line 42]: @@ -26121,9 +26159,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.8 +38: Time: 0.034 0.017 198.7 38: (ns/day) (hour/ns) -38: Performance: 323.663 0.074 +38: Performance: 84.967 0.282 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26146,18 +26184,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 94 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.2 +38: Time: 0.059 0.030 199.6 38: (ns/day) (hour/ns) -38: Performance: 1154.750 0.021 +38: Performance: 49.625 0.484 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (118 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (483 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp, line 42]: @@ -26221,10 +26259,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 51 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.5 +38: Time: 0.040 0.020 198.9 38: (ns/day) (hour/ns) -38: Performance: 350.851 0.068 +38: Performance: 72.444 0.331 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26247,18 +26288,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.5 +38: Time: 0.003 0.002 194.9 38: (ns/day) (hour/ns) -38: Performance: 998.152 0.024 +38: Performance: 848.216 0.028 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (126 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (456 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp, line 42]: @@ -26323,9 +26364,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 196.7 +38: Time: 0.019 0.010 197.6 38: (ns/day) (hour/ns) -38: Performance: 280.639 0.086 +38: Performance: 154.436 0.155 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26348,18 +26389,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.5 +38: Time: 0.003 0.002 195.0 38: (ns/day) (hour/ns) -38: Performance: 892.064 0.027 +38: Performance: 908.240 0.026 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (142 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (452 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp, line 42]: @@ -26424,9 +26465,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.4 +38: Time: 0.027 0.014 198.5 38: (ns/day) (hour/ns) -38: Performance: 304.347 0.079 +38: Performance: 108.412 0.221 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26449,18 +26490,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.4 +38: Time: 0.003 0.002 194.1 38: (ns/day) (hour/ns) -38: Performance: 1053.093 0.023 +38: Performance: 853.859 0.028 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (136 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (408 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp, line 42]: @@ -26525,9 +26566,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.6 +38: Time: 0.079 0.040 199.3 38: (ns/day) (hour/ns) -38: Performance: 346.451 0.069 +38: Performance: 37.140 0.646 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26554,14 +26595,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.4 +38: Time: 0.004 0.002 196.1 38: (ns/day) (hour/ns) -38: Performance: 1026.082 0.023 +38: Performance: 762.261 0.031 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (131 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (501 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp, line 42]: @@ -26626,9 +26667,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 196.4 +38: Time: 0.062 0.031 199.1 38: (ns/day) (hour/ns) -38: Performance: 274.206 0.088 +38: Performance: 47.053 0.510 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26651,18 +26692,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.5 +38: Time: 0.004 0.002 195.7 38: (ns/day) (hour/ns) -38: Performance: 998.314 0.024 +38: Performance: 816.189 0.029 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (112 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (452 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp, line 42]: @@ -26727,9 +26768,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.9 +38: Time: 0.037 0.019 198.6 38: (ns/day) (hour/ns) -38: Performance: 292.693 0.082 +38: Performance: 79.092 0.303 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26756,14 +26797,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 195.6 +38: Time: 0.003 0.002 194.4 38: (ns/day) (hour/ns) -38: Performance: 990.449 0.024 +38: Performance: 877.577 0.027 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (127 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (409 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp, line 42]: @@ -26828,9 +26869,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 194.7 +38: Time: 0.053 0.027 199.2 38: (ns/day) (hour/ns) -38: Performance: 349.319 0.069 +38: Performance: 54.840 0.438 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26857,14 +26898,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.3 +38: Time: 0.004 0.002 196.0 38: (ns/day) (hour/ns) -38: Performance: 1133.295 0.021 +38: Performance: 674.912 0.036 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (127 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (434 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp, line 42]: @@ -26929,9 +26970,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.6 +38: Time: 0.024 0.012 198.2 38: (ns/day) (hour/ns) -38: Performance: 342.312 0.070 +38: Performance: 122.878 0.195 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -26954,24 +26995,24 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.3 +38: Time: 0.002 0.001 195.5 38: (ns/day) (hour/ns) -38: Performance: 1126.457 0.021 +38: Performance: 1151.298 0.021 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_rerun.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_normal.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (124 ms) -38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (3879 ms total) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (364 ms) +38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (14597 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 57 tests from 4 test cases ran. (6964 ms total) +38: [==========] 57 tests from 4 test cases ran. (25309 ms total) 38: [ PASSED ] 57 tests. -38/40 Test #38: MdrunNonIntegratorTests .......... Passed 7.01 sec +38/40 Test #38: MdrunNonIntegratorTests .......... Passed 25.36 sec test 39 Start 39: LegacyGroupSchemeMdrunTests @@ -27022,7 +27063,7 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (210 ms) +39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (466 ms) 39: [ RUN ] Simple/TpiTest.ReproducesOutput/1 39: 39: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Simple_TpiTest_ReproducesOutput_1_input.mdp]: @@ -27065,13 +27106,13 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (200 ms) -39: [----------] 2 tests from Simple/TpiTest (410 ms total) +39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (385 ms) +39: [----------] 2 tests from Simple/TpiTest (851 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 2 tests from 1 test case ran. (410 ms total) +39: [==========] 2 tests from 1 test case ran. (851 ms total) 39: [ PASSED ] 2 tests. -39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.42 sec +39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.88 sec test 40 Start 40: MdrunMpiTests @@ -27086,7 +27127,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -246556459 +40: Setting the LD random seed to 12755066 40: Generated 3 of the 3 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 3 of the 3 1-4 parameter combinations @@ -27126,16 +27167,16 @@ 40: starting mdrun 'spc2' 40: 0 steps, 0.0 ps. 40: -40: NOTE: 49 % of the run time was spent in pair search, +40: NOTE: 40 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.000 174.7 +40: Time: 0.001 0.001 169.6 40: (ns/day) (hour/ns) -40: Performance: 213.798 0.112 +40: Performance: 157.150 0.153 40: This run will generate roughly 0 Mb of data -40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (53 ms) -40: [----------] 1 test from DomainDecompositionSpecialCasesTest (53 ms total) +40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (272 ms) +40: [----------] 1 test from DomainDecompositionSpecialCasesTest (272 ms total) 40: 40: [----------] 4 tests from MimicTest 40: [ RUN ] MimicTest.OneQuantumMol @@ -27151,7 +27192,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -982245071 +40: Setting the LD random seed to -20050174 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -27197,12 +27238,12 @@ 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.000 192.7 +40: Time: 0.001 0.000 192.6 40: (ns/day) (hour/ns) -40: Performance: 221.508 0.108 +40: Performance: 183.024 0.131 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.OneQuantumMol (53 ms) +40: [ OK ] MimicTest.OneQuantumMol (205 ms) 40: [ RUN ] MimicTest.AllQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -27216,7 +27257,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 1557740828 +40: Setting the LD random seed to -579919004 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -27258,16 +27299,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 40 % of the run time was spent in pair search, +40: NOTE: 32 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.000 189.7 +40: Time: 0.001 0.000 190.8 40: (ns/day) (hour/ns) -40: Performance: 192.555 0.125 +40: Performance: 212.794 0.113 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.AllQuantumMol (51 ms) +40: [ OK ] MimicTest.AllQuantumMol (176 ms) 40: [ RUN ] MimicTest.TwoQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -27281,7 +27322,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 1844022227 +40: Setting the LD random seed to 970606435 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -27323,16 +27364,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 38 % of the run time was spent in pair search, +40: NOTE: 29 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.000 191.2 +40: Time: 0.001 0.001 192.4 40: (ns/day) (hour/ns) -40: Performance: 233.347 0.103 +40: Performance: 169.261 0.142 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.TwoQuantumMol (56 ms) +40: [ OK ] MimicTest.TwoQuantumMol (180 ms) 40: [ RUN ] MimicTest.BondCuts 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp, line 3]: @@ -27346,7 +27387,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -684823498 +40: Setting the LD random seed to 888004317 40: Generated 2211 of the 2211 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 2211 of the 2211 1-4 parameter combinations @@ -27388,21 +27429,21 @@ 40: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 24 % of the run time was spent in pair search, +40: NOTE: 25 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.001 194.3 +40: Time: 0.001 0.001 193.6 40: (ns/day) (hour/ns) -40: Performance: 142.672 0.168 +40: Performance: 159.572 0.150 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 40: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 40: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 40: Note that mdrun will redetermine rlist based on the actual pair-list setup 40: This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.BondCuts (63 ms) -40: [----------] 4 tests from MimicTest (223 ms total) +40: [ OK ] MimicTest.BondCuts (209 ms) +40: [----------] 4 tests from MimicTest (770 ms total) 40: 40: [----------] 1 test from MultiSimTerminationTest 40: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -27418,7 +27459,7 @@ 40: scheme was introduced, but the group scheme was still the default. The 40: default is now the Verlet scheme, so you will observe different behaviour. 40: -40: Setting the LD random seed to 1561039307 +40: Setting the LD random seed to 553390442 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -27469,9 +27510,9 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.035 0.018 199.4 +40: Time: 0.080 0.040 199.5 40: (ns/day) (hour/ns) -40: Performance: 102.489 0.234 +40: Performance: 45.275 0.530 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 40: log). @@ -27496,9 +27537,9 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.025 0.013 199.3 +40: Time: 0.074 0.037 199.5 40: (ns/day) (hour/ns) -40: Performance: 143.409 0.167 +40: Performance: 49.004 0.490 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 40: log). @@ -27523,11 +27564,11 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.025 0.013 198.8 +40: Time: 0.072 0.036 199.5 40: (ns/day) (hour/ns) -40: Performance: 142.227 0.169 +40: Performance: 50.039 0.480 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (282 ms) +40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (623 ms) 40: [ RUN ] PmeTest.ScalesTheBox 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -27541,7 +27582,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 1531810114 +40: Setting the LD random seed to 548518760 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -27584,9 +27625,9 @@ 40: 0 steps, 0.0 ps. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.005 0.003 195.0 +40: Time: 0.006 0.003 191.6 40: (ns/day) (hour/ns) -40: Performance: 30.766 0.780 +40: Performance: 28.855 0.832 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 40: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -27595,8 +27636,8 @@ 40: Calculating fourier grid dimensions for X Y Z 40: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 40: This run will generate roughly 0 Mb of data -40: [ OK ] PmeTest.ScalesTheBox (579 ms) -40: [----------] 2 tests from PmeTest (861 ms total) +40: [ OK ] PmeTest.ScalesTheBox (1207 ms) +40: [----------] 2 tests from PmeTest (1830 ms total) 40: 40: [----------] 1 test from ReplicaExchangeTerminationTest 40: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -27664,7 +27705,7 @@ 40: Norm of force = 8.7721828e+01 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (157 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (458 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -27728,7 +27769,7 @@ 40: Norm of force = 1.8452307e+02 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (162 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (460 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -27790,7 +27831,7 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (77 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (217 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -27859,7 +27900,7 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (73 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (119 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -27931,7 +27972,7 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (11 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (25 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -28010,8 +28051,8 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (12 ms) -40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (492 ms total) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (24 ms) +40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1303 ms total) 40: 40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -28063,7 +28104,7 @@ 40: Norm of force = 1.6383933e+00 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (4 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (9 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -28116,7 +28157,7 @@ 40: Norm of force = 1.0525324e+00 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (4 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (12 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -28179,7 +28220,7 @@ 40: Norm of force = 1.0525324e+00 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (5 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (16 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -28240,7 +28281,7 @@ 40: Norm of force = 4.6227540e+03 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (75 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (105 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -28304,7 +28345,7 @@ 40: Norm of force = 3.6139019e+03 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (69 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (108 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -28378,28 +28419,28 @@ 40: Norm of force = 1.0198857e+04 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (71 ms) -40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (228 ms total) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (121 ms) +40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (371 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 21 tests from 7 test cases ran. (1857 ms total) +40: [==========] 21 tests from 7 test cases ran. (4547 ms total) 40: [ PASSED ] 21 tests. 40: 40: YOU HAVE 4 DISABLED TESTS 40: -40/40 Test #40: MdrunMpiTests .................... Passed 1.88 sec +40/40 Test #40: MdrunMpiTests .................... Passed 4.59 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: -GTest = 34.89 sec*proc (40 tests) -IntegrationTest = 11.44 sec*proc (5 tests) -MpiTest = 0.06 sec*proc (3 tests) -SlowTest = 19.51 sec*proc (1 test) -UnitTest = 3.94 sec*proc (34 tests) +GTest = 86.59 sec*proc (40 tests) +IntegrationTest = 36.41 sec*proc (5 tests) +MpiTest = 1.30 sec*proc (3 tests) +SlowTest = 37.59 sec*proc (1 test) +UnitTest = 12.59 sec*proc (34 tests) -Total Test time (real) = 34.96 sec -/usr/bin/make -j16 -C build/basic-dp tests +Total Test time (real) = 87.13 sec +/usr/bin/make -j15 -C build/basic-dp tests make[1]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -28409,89 +28450,89 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/external/googletest /build/gromacs-2019.1/build/basic-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/external/googletest /build/gromacs-2019.1/build/basic-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +Scanning dependencies of target gmock +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +[ 0%] Built target lmfit_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +[ 1%] Built target mdrun_test_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc +[ 3%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend +cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build Scanning dependencies of target onlinehelp-test-shared -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build +Scanning dependencies of target mdrunutility-test-shared +[ 5%] Built target libgromacs_external make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -Scanning dependencies of target mdrunutility-test-shared -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build -Scanning dependencies of target gmock make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -[ 0%] Built target lmfit_objlib -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 5%] Built target mdrun_objlib Scanning dependencies of target analysisdata-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build -[ 0%] Built target mdrun_objlib -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/datatest.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp -[ 2%] Built target tng_io_obj -[ 3%] Built target mdrun_test_objlib -[ 5%] Built target libgromacs_external -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' @@ -28506,10 +28547,10 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 80%] Built target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 80%] Built target mdrunutility-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 80%] Built target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 80%] Built target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 80%] Built target analysisdata-test-shared cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 @@ -28552,158 +28593,186 @@ [ 84%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/testutils/tests /build/gromacs-2019.1/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/testutils/tests /build/gromacs-2019.1/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +Scanning dependencies of target mdrun-mpi-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -Scanning dependencies of target hardware-test -Scanning dependencies of target mdrunutility-test +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target testutils-test -Scanning dependencies of target listed-forces-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -Scanning dependencies of target gpu_utils-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp -Scanning dependencies of target testutils-mpi-test +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -Scanning dependencies of target mdlib-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -Scanning dependencies of target domdec-test -Scanning dependencies of target applied-forces-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp +Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build -Scanning dependencies of target mdrun-mpi-test -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -Scanning dependencies of target mdrunutility-mpi-test -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp +Scanning dependencies of target listed-forces-test +Scanning dependencies of target mdlib-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -Scanning dependencies of target math-test -Scanning dependencies of target commandline-test -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build -Scanning dependencies of target fft-test -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build -Scanning dependencies of target ewald-test +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp +Scanning dependencies of target domdec-test +Scanning dependencies of target commandline-test +Scanning dependencies of target gpu_utils-test +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +Scanning dependencies of target fft-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +Scanning dependencies of target mdrunutility-test +Scanning dependencies of target ewald-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build +Scanning dependencies of target math-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp -Scanning dependencies of target onlinehelp-test make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp +Scanning dependencies of target hardware-test +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 84%] Built target listed-forces-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 84%] Built target testutils-mpi-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +[ 84%] Built target fft-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 84%] Built target hardware-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 84%] Built target applied-forces-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -[ 84%] Built target listed-forces-test +[ 85%] Built target domdec-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -28712,14 +28781,9 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target applied-forces-test +[ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -28728,54 +28792,67 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target hardware-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp Scanning dependencies of target table-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target fft-test +[ 85%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target mdrunutility-test +[ 85%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target mdrunutility-mpi-test +[ 85%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= @@ -28784,8 +28861,15 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 85%] Built target domdec-test +[ 85%] Built target testutils-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -28794,15 +28878,19 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisimtest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 85%] Built target restraintpotential-test +[ 85%] Built target taskassignment-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -28811,50 +28899,39 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 85%] Built target onlinehelp-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +[ 86%] Built target mdlib-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= -[ 85%] Built target utility-mpi-test -/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp Scanning dependencies of target awh-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 86%] Built target gpu_utils-test +/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 85%] Built target pull-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp -[ 85%] Built target taskassignment-test +[ 87%] Built target random-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -28863,24 +28940,17 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 85%] Built target testutils-test +[ 87%] Built target pull-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= @@ -28889,13 +28959,13 @@ /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/entropy.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target compat-test +[ 88%] Built target math-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake --color= @@ -28904,15 +28974,6 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target fileio-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= @@ -28921,29 +28982,21 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_traj.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target gpu_utils-test +[ 88%] Built target table-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Scanning dependencies of target correlations-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target table-test +[ 88%] Built target mdrun-mpi-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= @@ -28952,84 +29005,78 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o 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-DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/solvate.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -cd 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target mdrun-mpi-test +[ 89%] Built target compat-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp Scanning dependencies of target selection-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/indexutil.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/readir.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 87%] Built target awh-test +[ 89%] Built target commandline-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 87%] Built target pdb2gmx-test +[ 89%] Built target fileio-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp Scanning dependencies of target energyanalysis-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 87%] Built target correlations-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp Scanning dependencies of target tool-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /build/gromacs-2019.1/src/gromacs/tools/tests/report-methods.cpp -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/solvate.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 88%] Built target gmxpreprocess-test +[ 89%] Built target gmxana-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= @@ -29038,8 +29085,9 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target mdlib-test +[ 89%] Built target correlations-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake --color= @@ -29049,13 +29097,19 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/tpitest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target gmxana-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 89%] Built target pdb2gmx-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend +[ 89%] Built target energyanalysis-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-test @@ -29063,140 +29117,127 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/compressed_x_output.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target energyanalysis-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/angle.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/distance.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 90%] Built target gmxpreprocess-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/grompp.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp -[ 89%] Built target tool-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/rerun.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 90%] Built target tool-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/legacy-mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/legacy-mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/initialconstraints.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/arraydata.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target commandline-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp +[ 92%] Built target awh-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target legacy-mdrun-test -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp +[ 92%] Built target legacy-mdrun-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/poscalc.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/grompp.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/arraydata.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/rerun.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/initialconstraints.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectioncollection.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 90%] Built target ewald-test +[ 93%] Built target ewald-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/angle.cpp -[ 92%] Built target random-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/histogram.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/swapcoords.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectioncollection.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 93%] Built target math-test +[ 93%] Built target mdrun-non-integrator-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c 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/build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/termination.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectory_writing.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 94%] Built target options-test cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp -cd 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-DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 95%] Built target options-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o 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/build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 95%] Built target analysisdata-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp +[ 96%] Built target trajectoryanalysis-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 96%] Built target mdrun-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp -cd 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-DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +[ 97%] Built target simd-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 97%] Built target trajectoryanalysis-test +[ 98%] Built target selection-test cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 98%] Built target utility-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 -/usr/bin/c++ -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[100%] Built target selection-test +[100%] Built target utility-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1 /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -29232,7 +29273,7 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput @@ -29240,7 +29281,7 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput @@ -29251,7 +29292,7 @@ 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (5 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -29263,7 +29304,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData @@ -29281,29 +29322,29 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants -1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace -1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) +1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds @@ -29321,8 +29362,8 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (7 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (10 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -29339,7 +29380,7 @@ 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) -1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) +1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance @@ -29364,9 +29405,9 @@ 1: [----------] 4 tests from XvgTests (1 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (11 ms total) +1: [==========] 59 tests from 5 test cases ran. (17 ms total) 1: [ PASSED ] 59 tests. - 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.03 sec + 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -29376,11 +29417,11 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (2 ms) -2: [----------] 1 test from MpiSelfTest (2 ms total) +2: [ OK ] MpiSelfTest.Runs (1 ms) +2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (2 ms total) +2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec test 3 @@ -29449,19 +29490,19 @@ 3: [ RUN ] UpdateGroups.waterThreeSite 3: [ OK ] UpdateGroups.waterThreeSite (0 ms) 3: [ RUN ] UpdateGroups.waterFourSite -3: [ OK ] UpdateGroups.waterFourSite (0 ms) +3: [ OK ] UpdateGroups.waterFourSite (1 ms) 3: [ RUN ] UpdateGroups.fourAtomsWithSettle 3: [ OK ] UpdateGroups.fourAtomsWithSettle (0 ms) 3: [ RUN ] UpdateGroups.waterFlexAngle 3: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 3: [ RUN ] UpdateGroups.twoMoltypes 3: [ OK ] UpdateGroups.twoMoltypes (0 ms) -3: [----------] 9 tests from UpdateGroups (0 ms total) +3: [----------] 9 tests from UpdateGroups (1 ms total) 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs -3: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) -3: [----------] 1 test from UpdateGroupsCog (0 ms total) +3: [ OK ] UpdateGroupsCog.ComputesCogs (6 ms) +3: [----------] 1 test from UpdateGroupsCog (7 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -29515,9 +29556,9 @@ 3: [----------] 24 tests from WithParameters/SettleTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (2 ms total) +3: [==========] 50 tests from 8 test cases ran. (9 ms total) 3: [ PASSED ] 50 tests. - 3/40 Test #3: MdlibUnitTest .................... Passed 0.02 sec + 3/40 Test #3: MdlibUnitTest .................... Passed 0.03 sec test 4 Start 4: AppliedForcesUnitTest @@ -29527,7 +29568,7 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static -4: [ OK ] ElectricFieldTest.Static (1 ms) +4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed @@ -29557,7 +29598,7 @@ 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz -5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) +5: [ OK ] BondedTest.DihedralAnglePbcXyz (1 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy @@ -29575,13 +29616,13 @@ 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz -5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (1 ms) +5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (1 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (1 ms total) 5: [ PASSED ] 15 tests. - 5/40 Test #5: ListedForcesTest ................. Passed 0.01 sec + 5/40 Test #5: ListedForcesTest ................. Passed 0.02 sec test 6 Start 6: CommandLineUnitTests @@ -29595,23 +29636,23 @@ 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -6: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) +6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) +6: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -29619,14 +29660,14 @@ 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -29636,13 +29677,13 @@ 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument -6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) +6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues -6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) +6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers @@ -29692,11 +29733,11 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs -6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (1 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles @@ -29710,17 +29751,17 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 21 tests from ParseCommonArgsTest (2 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (6 ms total) +6: [==========] 55 tests from 6 test cases ran. (8 ms total) 6: [ PASSED ] 55 tests. - 6/40 Test #6: CommandLineUnitTests ............. Passed 0.02 sec + 6/40 Test #6: CommandLineUnitTests ............. Passed 0.03 sec test 7 Start 7: DomDecTests @@ -29747,13 +29788,13 @@ 7: 7: [----------] 2 tests from LocalAtomSetManager 7: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet -7: [ OK ] LocalAtomSetManager.CanAddEmptyLocalAtomSet (0 ms) +7: [ OK ] LocalAtomSetManager.CanAddEmptyLocalAtomSet (1 ms) 7: [ RUN ] LocalAtomSetManager.CanAddandReadLocalAtomSetIndices 7: [ OK ] LocalAtomSetManager.CanAddandReadLocalAtomSetIndices (0 ms) -7: [----------] 2 tests from LocalAtomSetManager (0 ms total) +7: [----------] 2 tests from LocalAtomSetManager (1 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 9 tests from 2 test cases ran. (0 ms total) +7: [==========] 9 tests from 2 test cases ran. (1 ms total) 7: [ PASSED ] 9 tests. 7/40 Test #7: DomDecTests ...................... Passed 0.01 sec test 8 @@ -29771,101 +29812,101 @@ 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (79 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (80 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (6 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (5 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (9 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (88 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (89 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 @@ -29875,49 +29916,49 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 @@ -29929,29 +29970,29 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 @@ -29971,21 +30012,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 @@ -29993,9 +30034,9 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 @@ -30009,37 +30050,37 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 @@ -30049,21 +30090,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 @@ -30075,11 +30116,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 @@ -30091,9 +30132,9 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 @@ -30101,11 +30142,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 @@ -30113,14 +30154,14 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (66 ms total) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) +8: [----------] 144 tests from SaneInput/PmeGatherTest (52 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 @@ -30128,30 +30169,30 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (4 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (28 ms total) +8: [----------] 16 tests from SaneInput/PmeSolveTest (20 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 @@ -30163,47 +30204,47 @@ 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (9 ms total) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (6 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (11 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 @@ -30215,7 +30256,7 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 @@ -30224,93 +30265,93 @@ 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (20 ms total) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (18 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (10 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (23 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (21 ms total) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (56 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (12 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (6 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (9 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (24 ms total) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (13 ms) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (73 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (17 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (13 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (24 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (7 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (51 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (13 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (19 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (48 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (19 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (6 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (55 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (28 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (263 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (433 ms total) +8: [==========] 257 tests from 10 test cases ran. (756 ms total) 8: [ PASSED ] 257 tests. - 8/40 Test #8: EwaldUnitTests ................... Passed 0.48 sec + 8/40 Test #8: EwaldUnitTests ................... Passed 0.80 sec test 9 Start 9: FFTUnitTests @@ -30320,48 +30361,48 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (13 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (51 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (28 ms) -9: [----------] 2 tests from ManyFFTTest (41 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (38 ms) +9: [----------] 2 tests from ManyFFTTest (90 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (8 ms) +9: [ OK ] FFTTest.Real2DLength18_15Test (9 ms) 9: [----------] 1 test from FFTTest (9 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -9: [----------] 1 test from FFFTest3D (2 ms total) +9: [ OK ] FFFTest3D.Real5_6_9 (6 ms) +9: [----------] 1 test from FFFTest3D (7 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (4 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (17 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (18 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (24 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (54 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (27 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (58 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (107 ms total) +9: [==========] 14 tests from 4 test cases ran. (164 ms total) 9: [ PASSED ] 14 tests. - 9/40 Test #9: FFTUnitTests ..................... Passed 0.12 sec + 9/40 Test #9: FFTUnitTests ..................... Passed 0.18 sec test 10 Start 10: GpuUtilsUnitTests @@ -30373,8 +30414,8 @@ 10: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 10: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 10: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory -10: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) -10: [----------] 2 tests from HostAllocatorTest/0 (0 ms total) +10: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (1 ms) +10: [----------] 2 tests from HostAllocatorTest/0 (1 ms total) 10: 10: [----------] 2 tests from HostAllocatorTest/1, where TypeParam = double 10: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks @@ -30517,23 +30558,23 @@ 10: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.Move 10: [ OK ] AllocatorTest/1.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/1 (1 ms total) +10: [----------] 4 tests from AllocatorTest/1 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (0 ms total) +10: [----------] 4 tests from AllocatorTest/2 (1 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -30547,7 +30588,7 @@ 10: [----------] 4 tests from AllocatorTest/3 (0 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 60 tests from 19 test cases ran. (1 ms total) +10: [==========] 60 tests from 19 test cases ran. (2 ms total) 10: [ PASSED ] 60 tests. 10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.02 sec test 11 @@ -30559,19 +30600,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (79 ms) +11: [ OK ] HardwareTopologyTest.Execute (46 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (81 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (42 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (69 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (51 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (78 ms) -11: [----------] 4 tests from HardwareTopologyTest (307 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (47 ms) +11: [----------] 4 tests from HardwareTopologyTest (187 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (307 ms total) +11: [==========] 4 tests from 1 test case ran. (187 ms total) 11: [ PASSED ] 4 tests. -11/40 Test #11: HardwareUnitTests ................ Passed 0.32 sec +11/40 Test #11: HardwareUnitTests ................ Passed 0.20 sec test 12 Start 12: MathUnitTests @@ -30627,9 +30668,9 @@ 12: 12: [----------] 21 tests from FunctionTest 12: [ RUN ] FunctionTest.StaticLog2 -12: [ OK ] FunctionTest.StaticLog2 (0 ms) +12: [ OK ] FunctionTest.StaticLog2 (1 ms) 12: [ RUN ] FunctionTest.Log2I32Bit -12: [ OK ] FunctionTest.Log2I32Bit (1 ms) +12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit 12: [ OK ] FunctionTest.Log2I64Bit (0 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor @@ -30639,7 +30680,7 @@ 12: [ RUN ] FunctionTest.InvsqrtDouble 12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger -12: [ OK ] FunctionTest.InvsqrtInteger (0 ms) +12: [ OK ] FunctionTest.InvsqrtInteger (1 ms) 12: [ RUN ] FunctionTest.InvcbrtFloat 12: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvcbrtDouble @@ -30653,7 +30694,7 @@ 12: [ RUN ] FunctionTest.SixthrootInteger 12: [ OK ] FunctionTest.SixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat -12: [ OK ] FunctionTest.InvsixthrootFloat (1 ms) +12: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootDouble 12: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootInteger @@ -30668,7 +30709,7 @@ 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -12: [----------] 21 tests from FunctionTest (2 ms total) +12: [----------] 21 tests from FunctionTest (3 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -30719,14 +30760,14 @@ 12: 12: [----------] 4 tests from PaddedVectorTest/3, where TypeParam = std::allocator > 12: [ RUN ] PaddedVectorTest/3.ConstructsResizesAndReserves -12: [ OK ] PaddedVectorTest/3.ConstructsResizesAndReserves (1 ms) +12: [ OK ] PaddedVectorTest/3.ConstructsResizesAndReserves (0 ms) 12: [ RUN ] PaddedVectorTest/3.CanCopyAssign 12: [ OK ] PaddedVectorTest/3.CanCopyAssign (0 ms) 12: [ RUN ] PaddedVectorTest/3.CanMoveAssign 12: [ OK ] PaddedVectorTest/3.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/3.CanSwap 12: [ OK ] PaddedVectorTest/3.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/3 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/3 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/4, where TypeParam = std::allocator > 12: [ RUN ] PaddedVectorTest/4.ConstructsResizesAndReserves @@ -30861,10 +30902,10 @@ 12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (0 ms total) +12: [----------] 33 tests from RVecTest (1 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (3 ms total) +12: [==========] 112 tests from 20 test cases ran. (4 ms total) 12: [ PASSED ] 112 tests. 12/40 Test #12: MathUnitTests .................... Passed 0.02 sec test 13 @@ -30886,7 +30927,7 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -30894,7 +30935,7 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced @@ -30903,20 +30944,20 @@ 13: NOTE: Affinity setting failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (18 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (8 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (4 ms) +13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (33 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +13: [----------] 17 tests from ThreadAffinityTest (4 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (33 ms total) +13: [==========] 17 tests from 1 test case ran. (5 ms total) 13: [ PASSED ] 17 tests. -13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.05 sec +13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.02 sec test 14 Start 14: MdrunUtilityMpiUnitTests @@ -30926,40 +30967,40 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (106 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (72 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (3 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (84 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (2 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (36 ms) +14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (59 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (32 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (390 ms total) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (11 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (40 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (2 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (31 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (97 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (2 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (92 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (2 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (44 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (19 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (60 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (383 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (2 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (12 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (773 ms total) +14: [==========] 13 tests from 2 test cases ran. (23 ms total) 14: [ PASSED ] 13 tests. -14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.79 sec +14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.04 sec test 15 Start 15: OnlineHelpUnitTests @@ -30969,7 +31010,7 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from TextTableFormatterTest 15: [ RUN ] TextTableFormatterTest.HandlesBasicCase -15: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) +15: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesIndentation @@ -30980,7 +31021,7 @@ 15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -15: [----------] 6 tests from TextTableFormatterTest (0 ms total) +15: [----------] 6 tests from TextTableFormatterTest (1 ms total) 15: 15: [----------] 3 tests from HelpManagerTest 15: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -31010,13 +31051,13 @@ 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation -15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList 15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable -15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsGridTable 15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles @@ -31024,7 +31065,7 @@ 15: [----------] 11 tests from HelpWriterContextTest (1 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (2 ms total) +15: [==========] 22 tests from 4 test cases ran. (3 ms total) 15: [ PASSED ] 22 tests. 15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.02 sec test 16 @@ -31042,7 +31083,7 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 16: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) @@ -31072,7 +31113,7 @@ 16: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 16: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (1 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile @@ -31097,7 +31138,7 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -31123,7 +31164,7 @@ 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -16: [----------] 9 tests from OptionsAssignerTest (1 ms total) +16: [----------] 9 tests from OptionsAssignerTest (0 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest 16: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -31163,7 +31204,7 @@ 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -31240,14 +31281,14 @@ 16: 16: [----------] 4 tests from TimeUnitBehaviorTest 16: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue -16: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) +16: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (1 ms) 16: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 16: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 16: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 16: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) -16: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) +16: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) 16: 16: [----------] 2 tests from TreeValueSupportAssignTest 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree @@ -31258,8 +31299,8 @@ 16: 16: [----------] 1 test from TreeValueSupportAssignErrorTest 16: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue -16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (1 ms) -16: [----------] 1 test from TreeValueSupportAssignErrorTest (1 ms total) +16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) +16: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 16: 16: [----------] 5 tests from TreeValueSupportCheckTest 16: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty @@ -31284,10 +31325,10 @@ 16: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 16: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues -16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (1 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -16: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) +16: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption @@ -31309,9 +31350,9 @@ 16: [----------] 8 tests from TreeValueSupportTest (1 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (4 ms total) +16: [==========] 110 tests from 18 test cases ran. (6 ms total) 16: [ PASSED ] 110 tests. -16/40 Test #16: OptionsUnitTests ................. Passed 0.02 sec +16/40 Test #16: OptionsUnitTests ................. Passed 0.03 sec test 17 Start 17: RandomUnitTests @@ -31414,11 +31455,11 @@ 17: [ OK ] UniformRealDistributionTest.Reset (0 ms) 17: [ RUN ] UniformRealDistributionTest.AltParam 17: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -17: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +17: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 @@ -31435,10 +31476,10 @@ 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (4 ms total) +17: [==========] 44 tests from 10 test cases ran. (3 ms total) 17: [ PASSED ] 44 tests. 17/40 Test #17: RandomUnitTests .................. Passed 0.02 sec test 18 @@ -31456,7 +31497,7 @@ 18: [----------] Global test environment tear-down 18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. -18/40 Test #18: RestraintTests ................... Passed 0.01 sec +18/40 Test #18: RestraintTests ................... Passed 0.02 sec test 19 Start 19: TableUnitTests @@ -31470,22 +31511,22 @@ 19: [ RUN ] SplineTableTest/0.Sinc 19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (26 ms) +19: [ OK ] SplineTableTest/0.LJ12 (28 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection -19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) +19: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (50 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (51 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (53 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (51 ms) 19: [ RUN ] SplineTableTest/0.Simd 19: [ OK ] SplineTableTest/0.Simd (12 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (52 ms) -19: [----------] 10 tests from SplineTableTest/0 (199 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (49 ms) +19: [----------] 10 tests from SplineTableTest/0 (197 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput @@ -31493,27 +31534,27 @@ 19: [ RUN ] SplineTableTest/1.Sinc 19: [ OK ] SplineTableTest/1.Sinc (2 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (64 ms) +19: [ OK ] SplineTableTest/1.LJ12 (67 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection -19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) +19: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (131 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (135 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (127 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (134 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (28 ms) +19: [ OK ] SplineTableTest/1.Simd (29 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (121 ms) -19: [----------] 10 tests from SplineTableTest/1 (478 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (122 ms) +19: [----------] 10 tests from SplineTableTest/1 (494 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (677 ms total) +19: [==========] 20 tests from 2 test cases ran. (691 ms total) 19: [ PASSED ] 20 tests. -19/40 Test #19: TableUnitTests ................... Passed 0.69 sec +19/40 Test #19: TableUnitTests ................... Passed 0.71 sec test 20 Start 20: TaskAssignmentUnitTests @@ -31523,12 +31564,12 @@ 20: [----------] Global test environment set-up. 20: [----------] 3 tests from GpuIdStringHandlingTest 20: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork -20: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) +20: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms) 20: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 20: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) -20: [----------] 3 tests from GpuIdStringHandlingTest (0 ms total) +20: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 3 tests from 1 test case ran. (1 ms total) @@ -31545,27 +31586,27 @@ 21: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.Move 21: [ OK ] AllocatorTest/0.Move (0 ms) 21: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/0 (1 ms total) +21: [----------] 5 tests from AllocatorTest/0 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.Move 21: [ OK ] AllocatorTest/1.Move (0 ms) 21: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/1 (0 ms total) +21: [----------] 5 tests from AllocatorTest/1 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -31604,7 +31645,7 @@ 21: [ OK ] AllocatorTest/4.Move (0 ms) 21: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/4 (1 ms total) +21: [----------] 5 tests from AllocatorTest/4 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment @@ -31617,7 +31658,7 @@ 21: [ OK ] AllocatorTest/5.Move (0 ms) 21: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/5 (0 ms total) +21: [----------] 5 tests from AllocatorTest/5 (1 ms total) 21: 21: [----------] 1 test from AllocatorUntypedTest 21: [ RUN ] AllocatorUntypedTest.Comparison @@ -31800,7 +31841,7 @@ 21: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/7 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks @@ -31863,7 +31904,7 @@ 21: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/10 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/10 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks @@ -32056,13 +32097,13 @@ 21: 21: [----------] 4 tests from KeyValueTreeSerializerTest 21: [ RUN ] KeyValueTreeSerializerTest.EmptyTree -21: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms) +21: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) 21: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest @@ -32073,12 +32114,12 @@ 21: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 21: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromString -21: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -21: [----------] 6 tests from TreeValueTransformTest (1 ms total) +21: [----------] 6 tests from TreeValueTransformTest (0 ms total) 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -32087,9 +32128,9 @@ 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported -21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (1 ms) +21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) 21: [----------] 2 tests from RegexBasicTest (1 ms total) 21: 21: [----------] 5 tests from LoggerTest @@ -32118,12 +32159,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (0 ms total) +21: [----------] 3 tests from MutexTaskTest (1 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -32134,7 +32175,7 @@ 21: [ OK ] PathTest.GetParentPathWorks (0 ms) 21: [ RUN ] PathTest.GetParentPathAndBasenameWorks 21: [ OK ] PathTest.GetParentPathAndBasenameWorks (0 ms) -21: [----------] 4 tests from PathTest (1 ms total) +21: [----------] 4 tests from PathTest (0 ms total) 21: 21: [----------] 2 tests from PhysicalNodeCommunicatorTest 21: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -32217,8 +32258,8 @@ 21: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace -21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (1 ms) -21: [----------] 10 tests from TextLineWrapperTest (1 ms total) +21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) +21: [----------] 10 tests from TextLineWrapperTest (0 ms total) 21: 21: [----------] 6 tests from TextWriterTest 21: [ RUN ] TextWriterTest.WritesLines @@ -32253,7 +32294,7 @@ 21: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 21: [ RUN ] BitmaskTest32_11/BitmaskTest32.ToHex/0 21: [ OK ] BitmaskTest32_11/BitmaskTest32.ToHex/0 (0 ms) -21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) +21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (1 ms total) 21: 21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 @@ -32319,7 +32360,7 @@ 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 @@ -32378,10 +32419,10 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from FileMD5Test 23: [ RUN ] FileMD5Test.CanComputeMD5 -23: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) +23: [ OK ] FileMD5Test.CanComputeMD5 (2 ms) 23: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -23: [----------] 2 tests from FileMD5Test (1 ms total) +23: [----------] 2 tests from FileMD5Test (2 ms total) 23: 23: [----------] 9 tests from ReadTest 23: [ RUN ] ReadTest.get_eint_ReadsInteger @@ -32436,18 +32477,18 @@ 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile -23: [ OK ] TngTest.CanOpenTngFile (1 ms) +23: [ OK ] TngTest.CanOpenTngFile (0 ms) 23: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 23: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -23: [----------] 2 tests from TngTest (1 ms total) +23: [----------] 2 tests from TngTest (0 ms total) 23: 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (3 ms total) @@ -32494,8 +32535,8 @@ 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (2 ms) -25: [----------] 1 test from gridTest (2 ms total) +25: [ OK ] gridTest.neighborhood (3 ms) +25: [----------] 1 test from gridTest (3 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 @@ -32503,9 +32544,9 @@ 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 @@ -32513,8 +32554,8 @@ 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -25: [----------] 8 tests from WithParameters/BiasTest (4 ms total) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) +25: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -32524,9 +32565,9 @@ 25: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (7 ms total) +25: [==========] 12 tests from 4 test cases ran. (9 ms total) 25: [ PASSED ] 12 tests. -25/40 Test #25: AwhTest .......................... Passed 0.02 sec +25/40 Test #25: AwhTest .......................... Passed 0.03 sec test 26 Start 26: SimdUnitTests @@ -32699,43 +32740,43 @@ 26: [ RUN ] SimdMathTest.log 26: [ OK ] SimdMathTest.log (1 ms) 26: [ RUN ] SimdMathTest.exp2 -26: [ OK ] SimdMathTest.exp2 (6 ms) +26: [ OK ] SimdMathTest.exp2 (9 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe 26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 26: [ RUN ] SimdMathTest.exp -26: [ OK ] SimdMathTest.exp (6 ms) +26: [ OK ] SimdMathTest.exp (8 ms) 26: [ RUN ] SimdMathTest.expUnsafe -26: [ OK ] SimdMathTest.expUnsafe (0 ms) +26: [ OK ] SimdMathTest.expUnsafe (2 ms) 26: [ RUN ] SimdMathTest.erf -26: [ OK ] SimdMathTest.erf (2 ms) +26: [ OK ] SimdMathTest.erf (1 ms) 26: [ RUN ] SimdMathTest.erfc 26: [ OK ] SimdMathTest.erfc (1 ms) 26: [ RUN ] SimdMathTest.sin 26: [ OK ] SimdMathTest.sin (2 ms) 26: [ RUN ] SimdMathTest.cos -26: [ OK ] SimdMathTest.cos (1 ms) +26: [ OK ] SimdMathTest.cos (2 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (5 ms) +26: [ OK ] SimdMathTest.tan (6 ms) 26: [ RUN ] SimdMathTest.asin 26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos 26: [ OK ] SimdMathTest.acos (1 ms) 26: [ RUN ] SimdMathTest.atan -26: [ OK ] SimdMathTest.atan (1 ms) +26: [ OK ] SimdMathTest.atan (4 ms) 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection 26: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy 26: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy 26: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy @@ -32743,34 +32784,34 @@ 26: [ RUN ] SimdMathTest.exp2SingleAccuracy 26: [ OK ] SimdMathTest.exp2SingleAccuracy (3 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy -26: [ OK ] SimdMathTest.expSingleAccuracy (3 ms) +26: [ OK ] SimdMathTest.expSingleAccuracy (4 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy 26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy 26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy -26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.cosSingleAccuracy (3 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (4 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (5 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy 26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -26: [----------] 45 tests from SimdMathTest (60 ms total) +26: [----------] 45 tests from SimdMathTest (79 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -32965,7 +33006,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (1 ms total) +26: [----------] 41 tests from SimdScalarTest (0 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -33061,12 +33102,12 @@ 26: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 26: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -26: [----------] 37 tests from SimdScalarMathTest (0 ms total) +26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 236 tests from 19 test cases ran. (61 ms total) +26: [==========] 236 tests from 19 test cases ran. (80 ms total) 26: [ PASSED ] 236 tests. -26/40 Test #26: SimdUnitTests .................... Passed 0.08 sec +26/40 Test #26: SimdUnitTests .................... Passed 0.10 sec test 27 Start 27: CompatibilityHelpersTests @@ -33121,12 +33162,12 @@ 28: [ RUN ] Entropy.Schlitter_300_Linear 28: [ OK ] Entropy.Schlitter_300_Linear (0 ms) 28: [ RUN ] Entropy.QuasiHarmonic_300_NoLinear -28: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (0 ms) +28: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (1 ms) 28: [ RUN ] Entropy.QuasiHarmonic_200_NoLinear 28: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (0 ms) 28: [ RUN ] Entropy.QuasiHarmonic_200_Linear 28: [ OK ] Entropy.QuasiHarmonic_200_Linear (0 ms) -28: [----------] 5 tests from Entropy (0 ms total) +28: [----------] 5 tests from Entropy (1 ms total) 28: 28: [----------] 3 tests from MsdTest 28: [ RUN ] MsdTest.threeDimensionalDiffusion @@ -33178,7 +33219,7 @@ 28: Select a group: trr version: GMX_trn_file (single precision) 28: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (2 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -33200,7 +33241,7 @@ 28: Select a group: Reading frames from gro file '', 6 atoms. 28: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (2 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -33208,15 +33249,15 @@ 28: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 28: Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements 28: Group 2 ( SOL) has 6 elements 28: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (1 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (9 ms total) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (11 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 @@ -33228,7 +33269,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (6 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (5 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -33240,7 +33281,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (5 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (4 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -33263,7 +33304,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -33287,7 +33328,7 @@ 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' 28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (2 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (19 ms total) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (17 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -33321,7 +33362,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (0 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -33334,7 +33375,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (0 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -33347,7 +33388,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -33357,11 +33398,11 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (3 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 26 tests from 5 test cases ran. (34 ms total) +28: [==========] 26 tests from 5 test cases ran. (35 ms total) 28: [ PASSED ] 26 tests. 28/40 Test #28: GmxAnaTest ....................... Passed 0.05 sec test 29 @@ -33373,11 +33414,11 @@ 29: [----------] Global test environment set-up. 29: [----------] 4 tests from GenconfTest 29: [ RUN ] GenconfTest.nbox_Works -29: [ OK ] GenconfTest.nbox_Works (1 ms) +29: [ OK ] GenconfTest.nbox_Works (0 ms) 29: [ RUN ] GenconfTest.nbox_norenumber_Works -29: [ OK ] GenconfTest.nbox_norenumber_Works (0 ms) +29: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 29: [ RUN ] GenconfTest.nbox_dist_Works -29: [ OK ] GenconfTest.nbox_dist_Works (1 ms) +29: [ OK ] GenconfTest.nbox_dist_Works (0 ms) 29: [ RUN ] GenconfTest.nbox_rot_Works 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 @@ -33391,7 +33432,7 @@ 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 -29: [ OK ] GenconfTest.nbox_rot_Works (0 ms) +29: [ OK ] GenconfTest.nbox_rot_Works (1 ms) 29: [----------] 4 tests from GenconfTest (2 ms total) 29: 29: [----------] 5 tests from InsertMoleculesTest @@ -33423,7 +33464,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 29: 29: Output configuration contains 8 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (3 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (2 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 29: Initialising inter-atomic distances... 29: @@ -33455,7 +33496,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 29: 29: Output configuration contains 10 atoms in 10 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (1 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (2 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 29: Reading solute configuration 29: Initialising inter-atomic distances... @@ -33485,7 +33526,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 29: 29: Output configuration contains 10 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (2 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (1 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 29: Reading solute configuration 29: Initialising inter-atomic distances... @@ -33518,7 +33559,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 29: 29: Output configuration contains 632 atoms in 212 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (9 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (20 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 29: Initialising inter-atomic distances... 29: @@ -33551,8 +33592,8 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 29: 29: Output configuration contains 6 atoms in 3 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (2 ms) -29: [----------] 5 tests from InsertMoleculesTest (17 ms total) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (3 ms) +29: [----------] 5 tests from InsertMoleculesTest (28 ms total) 29: 29: [----------] 12 tests from GetIrTest 29: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -33565,9 +33606,9 @@ 29: 29: Ignoring obsolete mdp entry 'title' 29: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' -29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (3 ms) +29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (6 ms) 29: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme -29: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (2 ms) +29: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (4 ms) 29: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]: @@ -33576,7 +33617,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (2 ms) +29: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (4 ms) 29: [ RUN ] GetIrTest.DefineHandlesAssignmentOnRhs 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp, line 2]: @@ -33585,7 +33626,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (3 ms) +29: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (10 ms) 29: [ RUN ] GetIrTest.EmptyInputWorks 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]: @@ -33594,7 +33635,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.EmptyInputWorks (2 ms) +29: [ OK ] GetIrTest.EmptyInputWorks (3 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricField 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]: @@ -33603,7 +33644,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricField (3 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricField (2 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: @@ -33612,7 +33653,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (2 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (3 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]: @@ -33621,9 +33662,9 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (3 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (2 ms) 29: [ RUN ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys -29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (2 ms) +29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (4 ms) 29: [ RUN ] GetIrTest.ImplicitSolventNoWorks 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ImplicitSolventNoWorks_input.mdp, line 2]: @@ -33634,7 +33675,7 @@ 29: 29: [ OK ] GetIrTest.ImplicitSolventNoWorks (3 ms) 29: [ RUN ] GetIrTest.ImplicitSolventYesWorks -29: [ OK ] GetIrTest.ImplicitSolventYesWorks (5 ms) +29: [ OK ] GetIrTest.ImplicitSolventYesWorks (7 ms) 29: [ RUN ] GetIrTest.HandlesMimic 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesMimic_input.mdp, line 3]: @@ -33643,8 +33684,8 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.HandlesMimic (3 ms) -29: [----------] 12 tests from GetIrTest (33 ms total) +29: [ OK ] GetIrTest.HandlesMimic (4 ms) +29: [----------] 12 tests from GetIrTest (53 ms total) 29: 29: [----------] 5 tests from SolvateTest 29: [ RUN ] SolvateTest.cs_box_Works @@ -33684,7 +33725,7 @@ 29: Density : 1056.36 (g/l) 29: Number of solvent molecules: 47 29: -29: [ OK ] SolvateTest.cs_box_Works (8 ms) +29: [ OK ] SolvateTest.cs_box_Works (13 ms) 29: [ RUN ] SolvateTest.cs_cp_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -33724,7 +33765,7 @@ 29: Density : 974.776 (g/l) 29: Number of solvent molecules: 886 29: -29: [ OK ] SolvateTest.cs_cp_Works (51 ms) +29: [ OK ] SolvateTest.cs_cp_Works (54 ms) 29: [ RUN ] SolvateTest.cs_cp_p_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -33766,7 +33807,7 @@ 29: 29: Processing topology 29: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top) -29: [ OK ] SolvateTest.cs_cp_p_Works (50 ms) +29: [ OK ] SolvateTest.cs_cp_p_Works (47 ms) 29: [ RUN ] SolvateTest.shell_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -33807,7 +33848,7 @@ 29: Density : 279.3 (g/l) 29: Number of solvent molecules: 252 29: -29: [ OK ] SolvateTest.shell_Works (25 ms) +29: [ OK ] SolvateTest.shell_Works (23 ms) 29: [ RUN ] SolvateTest.update_Topology_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -33851,13 +33892,13 @@ 29: Processing topology 29: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 29: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -29: [ OK ] SolvateTest.update_Topology_Works (201 ms) -29: [----------] 5 tests from SolvateTest (336 ms total) +29: [ OK ] SolvateTest.update_Topology_Works (226 ms) +29: [----------] 5 tests from SolvateTest (363 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 26 tests from 4 test cases ran. (388 ms total) +29: [==========] 26 tests from 4 test cases ran. (446 ms total) 29: [ PASSED ] 26 tests. -29/40 Test #29: GmxPreprocessTests ............... Passed 0.40 sec +29/40 Test #29: GmxPreprocessTests ............... Passed 0.46 sec test 30 Start 30: Pdb2gmxTest @@ -33927,7 +33968,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (323 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (370 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33990,7 +34031,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (293 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (361 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34051,7 +34092,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (265 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (398 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34112,7 +34153,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (247 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (357 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34177,7 +34218,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (299 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (431 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34243,7 +34284,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (333 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (447 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34307,7 +34348,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (390 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (410 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34371,7 +34412,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (339 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (392 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34433,7 +34474,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (330 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (366 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34496,7 +34537,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (384 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (422 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34557,7 +34598,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (302 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (348 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34618,7 +34659,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (266 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (295 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34683,7 +34724,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (305 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (372 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34749,7 +34790,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (353 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (425 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34813,7 +34854,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (323 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (421 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34877,7 +34918,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (335 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (347 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34939,7 +34980,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (322 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (364 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -35002,7 +35043,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (376 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (395 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -35063,7 +35104,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (331 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (374 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -35124,7 +35165,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (260 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (337 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -35189,7 +35230,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (328 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (394 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -35255,7 +35296,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (341 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (407 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -35319,7 +35360,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (331 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (372 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -35383,8 +35424,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (278 ms) -30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (7656 ms total) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (362 ms) +30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (9168 ms total) 30: 30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -35463,7 +35504,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (157 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (186 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35541,7 +35582,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (172 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (232 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35617,7 +35658,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (176 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (184 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35693,7 +35734,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (172 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (185 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35773,7 +35814,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (194 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (177 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35854,7 +35895,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (209 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (227 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35933,7 +35974,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (195 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (240 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36012,7 +36053,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (178 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (181 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36089,7 +36130,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (160 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (174 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36167,7 +36208,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (169 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (235 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36243,7 +36284,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (149 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (176 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36319,7 +36360,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (138 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (157 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36399,7 +36440,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (153 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (191 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36480,7 +36521,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (183 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (221 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36559,7 +36600,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (153 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (200 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -36638,8 +36679,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (144 ms) -30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (2703 ms total) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (345 ms) +30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (3311 ms total) 30: 30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -36722,7 +36763,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (162 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (223 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36804,7 +36845,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (174 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (277 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36884,7 +36925,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (161 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (248 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36964,7 +37005,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (138 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (207 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37048,7 +37089,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (156 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (228 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37133,7 +37174,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (184 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (243 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37216,7 +37257,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (158 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (270 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37299,7 +37340,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (142 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (237 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37380,7 +37421,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (147 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (225 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37462,7 +37503,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (174 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (265 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37542,7 +37583,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (148 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (223 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37622,7 +37663,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (162 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (200 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37706,7 +37747,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (201 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (202 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37791,7 +37832,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (235 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (292 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37874,7 +37915,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (185 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (230 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -37957,8 +37998,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (185 ms) -30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (2712 ms total) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (217 ms) +30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (3788 ms total) 30: 30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -38035,7 +38076,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (330 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (402 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -38111,7 +38152,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (395 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (426 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -38185,7 +38226,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (332 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (390 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -38259,7 +38300,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (272 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (350 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -38337,7 +38378,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (310 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (352 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -38416,7 +38457,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (346 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (419 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -38493,7 +38534,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (327 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (395 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -38570,8 +38611,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (279 ms) -30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (2591 ms total) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (350 ms) +30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (3086 ms total) 30: 30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -38657,7 +38698,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (300 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (374 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38742,7 +38783,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (315 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (461 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38825,7 +38866,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (301 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (390 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38908,7 +38949,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (259 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (356 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38995,7 +39036,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (314 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (423 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -39083,7 +39124,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (340 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (484 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -39169,7 +39210,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (319 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (426 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -39255,8 +39296,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (296 ms) -30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (2444 ms total) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (349 ms) +30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (3263 ms total) 30: 30: [----------] 8 tests from ChainSep/Pdb2gmxTest 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -39353,7 +39394,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (295 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (366 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -39497,7 +39538,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (49 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (66 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -39592,7 +39633,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (286 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (380 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -39736,7 +39777,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (45 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (56 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -39835,7 +39876,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (269 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (399 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -40005,7 +40046,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (44 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (68 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -40096,7 +40137,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (267 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (381 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -40213,13 +40254,13 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (45 ms) -30: [----------] 8 tests from ChainSep/Pdb2gmxTest (1300 ms total) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (61 ms) +30: [----------] 8 tests from ChainSep/Pdb2gmxTest (1778 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 80 tests from 6 test cases ran. (19407 ms total) +30: [==========] 80 tests from 6 test cases ran. (24394 ms total) 30: [ PASSED ] 80 tests. -30/40 Test #30: Pdb2gmxTest ...................... Passed 19.43 sec +30/40 Test #30: Pdb2gmxTest ...................... Passed 24.43 sec test 31 Start 31: CorrelationsTest @@ -40229,36 +40270,36 @@ 31: [----------] Global test environment set-up. 31: [----------] 10 tests from AutocorrTest 31: [ RUN ] AutocorrTest.EacNormal -31: [ OK ] AutocorrTest.EacNormal (58 ms) +31: [ OK ] AutocorrTest.EacNormal (79 ms) 31: [ RUN ] AutocorrTest.EacNoNormalize -31: [ OK ] AutocorrTest.EacNoNormalize (25 ms) +31: [ OK ] AutocorrTest.EacNoNormalize (40 ms) 31: [ RUN ] AutocorrTest.EacCos -31: [ OK ] AutocorrTest.EacCos (53 ms) +31: [ OK ] AutocorrTest.EacCos (79 ms) 31: [ RUN ] AutocorrTest.EacVector -31: [ OK ] AutocorrTest.EacVector (97 ms) +31: [ OK ] AutocorrTest.EacVector (113 ms) 31: [ RUN ] AutocorrTest.EacRcross 31: [ OK ] AutocorrTest.EacRcross (2 ms) 31: [ RUN ] AutocorrTest.EacP0 -31: [ OK ] AutocorrTest.EacP0 (85 ms) +31: [ OK ] AutocorrTest.EacP0 (124 ms) 31: [ RUN ] AutocorrTest.EacP1 -31: [ OK ] AutocorrTest.EacP1 (110 ms) +31: [ OK ] AutocorrTest.EacP1 (115 ms) 31: [ RUN ] AutocorrTest.EacP2 -31: [ OK ] AutocorrTest.EacP2 (196 ms) +31: [ OK ] AutocorrTest.EacP2 (296 ms) 31: [ RUN ] AutocorrTest.EacP3 -31: [ OK ] AutocorrTest.EacP3 (4 ms) +31: [ OK ] AutocorrTest.EacP3 (8 ms) 31: [ RUN ] AutocorrTest.EacP4 -31: [ OK ] AutocorrTest.EacP4 (110 ms) -31: [----------] 10 tests from AutocorrTest (743 ms total) +31: [ OK ] AutocorrTest.EacP4 (128 ms) +31: [----------] 10 tests from AutocorrTest (987 ms total) 31: 31: [----------] 1 test from ManyAutocorrelationTest 31: [ RUN ] ManyAutocorrelationTest.Empty -31: [ OK ] ManyAutocorrelationTest.Empty (1 ms) -31: [----------] 1 test from ManyAutocorrelationTest (1 ms total) +31: [ OK ] ManyAutocorrelationTest.Empty (0 ms) +31: [----------] 1 test from ManyAutocorrelationTest (0 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 11 tests from 2 test cases ran. (747 ms total) +31: [==========] 11 tests from 2 test cases ran. (990 ms total) 31: [ PASSED ] 11 tests. -31/40 Test #31: CorrelationsTest ................. Passed 0.77 sec +31/40 Test #31: CorrelationsTest ................. Passed 1.01 sec test 32 Start 32: AnalysisDataUnitTests @@ -40270,16 +40311,16 @@ 32: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 32: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 32: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules -32: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms) +32: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) 32: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 32: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) -32: [----------] 3 tests from AnalysisDataInitializationTest (0 ms total) +32: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 32: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly @@ -40289,26 +40330,26 @@ 32: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 32: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) +32: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (1 ms) +32: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) 32: [----------] 8 tests from AnalysisDataCommonTest/0 (4 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) 32: [----------] 8 tests from AnalysisDataCommonTest/1 (4 ms total) @@ -40317,7 +40358,7 @@ 32: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly @@ -40330,32 +40371,32 @@ 32: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/2 (5 ms total) +32: [----------] 8 tests from AnalysisDataCommonTest/2 (6 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (0 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (0 ms) +32: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData 32: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/3 (5 ms total) +32: [----------] 8 tests from AnalysisDataCommonTest/3 (6 ms total) 32: 32: [----------] 4 tests from AnalysisArrayDataTest 32: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly -32: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (0 ms) +32: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisArrayDataTest.StorageWorks -32: [ OK ] AnalysisArrayDataTest.StorageWorks (1 ms) +32: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 32: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 32: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 32: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount @@ -40364,24 +40405,24 @@ 32: 32: [----------] 6 tests from AverageModuleTest 32: [ RUN ] AverageModuleTest.BasicTest -32: [ OK ] AverageModuleTest.BasicTest (0 ms) +32: [ OK ] AverageModuleTest.BasicTest (1 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipointData -32: [ OK ] AverageModuleTest.HandlesMultipointData (0 ms) +32: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 32: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 32: [ RUN ] AverageModuleTest.HandlesDataSetAveraging 32: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 32: [ RUN ] AverageModuleTest.CanCustomizeXAxis -32: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) +32: [ OK ] AverageModuleTest.CanCustomizeXAxis (0 ms) 32: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 32: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) -32: [----------] 6 tests from AverageModuleTest (5 ms total) +32: [----------] 6 tests from AverageModuleTest (6 ms total) 32: 32: [----------] 2 tests from FrameAverageModuleTest 32: [ RUN ] FrameAverageModuleTest.BasicTest 32: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 32: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -32: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (0 ms) +32: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) 32: [----------] 2 tests from FrameAverageModuleTest (2 ms total) 32: 32: [----------] 7 tests from AnalysisHistogramSettingsTest @@ -40403,10 +40444,10 @@ 32: 32: [----------] 2 tests from SimpleHistogramModuleTest 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly -32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) +32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (2 ms) 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll 32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) -32: [----------] 2 tests from SimpleHistogramModuleTest (2 ms total) +32: [----------] 2 tests from SimpleHistogramModuleTest (3 ms total) 32: 32: [----------] 3 tests from WeightedHistogramModuleTest 32: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly @@ -40423,23 +40464,23 @@ 32: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 32: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 32: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets -32: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (1 ms) -32: [----------] 3 tests from BinAverageModuleTest (3 ms total) +32: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (2 ms) +32: [----------] 3 tests from BinAverageModuleTest (4 ms total) 32: 32: [----------] 4 tests from AbstractAverageHistogramTest 32: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly 32: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (1 ms) 32: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram -32: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) +32: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (2 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) -32: [----------] 4 tests from AbstractAverageHistogramTest (4 ms total) +32: [----------] 4 tests from AbstractAverageHistogramTest (6 ms total) 32: 32: [----------] 3 tests from LifetimeModuleTest 32: [ RUN ] LifetimeModuleTest.BasicTest -32: [ OK ] LifetimeModuleTest.BasicTest (1 ms) +32: [ OK ] LifetimeModuleTest.BasicTest (0 ms) 32: [ RUN ] LifetimeModuleTest.CumulativeTest 32: [ OK ] LifetimeModuleTest.CumulativeTest (0 ms) 32: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets @@ -40447,7 +40488,7 @@ 32: [----------] 3 tests from LifetimeModuleTest (2 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 69 tests from 14 test cases ran. (41 ms total) +32: [==========] 69 tests from 14 test cases ran. (49 ms total) 32: [ PASSED ] 69 tests. 32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.06 sec test 33 @@ -40470,9 +40511,9 @@ 33: [ RUN ] IndexBlockTest.CreatesResidueBlock 33: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlock -33: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms) +33: [ OK ] IndexBlockTest.CreatesMoleculeBlock (1 ms) 33: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion -33: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (1 ms) +33: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion 33: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) 33: [ RUN ] IndexBlockTest.CreatesSingleBlock @@ -40493,17 +40534,17 @@ 33: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 33: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 33: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -33: [----------] 15 tests from IndexBlockTest (1 ms total) +33: [----------] 15 tests from IndexBlockTest (2 ms total) 33: 33: [----------] 11 tests from IndexMapTest 33: [ RUN ] IndexMapTest.InitializesAtomBlock 33: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom -33: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (1 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 33: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue -33: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (1 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 33: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll @@ -40513,32 +40554,32 @@ 33: [ RUN ] IndexMapTest.MapsSingleBlock 33: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocks -33: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) +33: [ OK ] IndexMapTest.MapsResidueBlocks (1 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 33: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 33: [ RUN ] IndexMapTest.HandlesMultipleRequests 33: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -33: [----------] 11 tests from IndexMapTest (2 ms total) +33: [----------] 11 tests from IndexMapTest (4 ms total) 33: 33: [----------] 15 tests from NeighborhoodSearchTest 33: [ RUN ] NeighborhoodSearchTest.SimpleSearch -33: [ OK ] NeighborhoodSearchTest.SimpleSearch (15 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearch (24 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (16 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (22 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchBox -33: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (9 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (11 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -33: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (6 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 33: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 33: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (45 ms) +33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (56 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 33: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -40550,14 +40591,14 @@ 33: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions 33: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -33: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (0 ms) -33: [----------] 15 tests from NeighborhoodSearchTest (99 ms total) +33: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) +33: [----------] 15 tests from NeighborhoodSearchTest (133 ms total) 33: 33: [----------] 12 tests from PositionCalculationTest 33: [ RUN ] PositionCalculationTest.ComputesAtomPositions 33: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -33: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) +33: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) 33: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 33: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions @@ -40565,50 +40606,50 @@ 33: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 33: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole -33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) +33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (1 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionMask -33: [ OK ] PositionCalculationTest.ComputesPositionMask (1 ms) +33: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) +33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) 33: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 33: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 33: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 33: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -33: [----------] 12 tests from PositionCalculationTest (2 ms total) +33: [----------] 12 tests from PositionCalculationTest (3 ms total) 33: 33: [----------] 30 tests from SelectionCollectionTest 33: [ RUN ] SelectionCollectionTest.HandlesNoSelections -33: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -33: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 33: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -33: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 33: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) +33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 33: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions -33: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 -33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference @@ -40616,32 +40657,32 @@ 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo -33: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes 33: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -33: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation -33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 -33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets -33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -33: [----------] 30 tests from SelectionCollectionTest (8 ms total) +33: [----------] 30 tests from SelectionCollectionTest (11 ms total) 33: 33: [----------] 14 tests from SelectionCollectionInteractiveTest 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput @@ -40649,11 +40690,11 @@ 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 33: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput -33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput -33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -33: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 33: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus @@ -40665,42 +40706,42 @@ 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections -33: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -33: [----------] 14 tests from SelectionCollectionInteractiveTest (5 ms total) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) +33: [----------] 14 tests from SelectionCollectionInteractiveTest (7 ms total) 33: 33: [----------] 66 tests from SelectionCollectionDataTest 33: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 33: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -33: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResnr -33: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -33: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex -33: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomname -33: [ OK ] SelectionCollectionDataTest.HandlesAtomname (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname -33: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -33: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesChain -33: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMass -33: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesCharge 33: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 33: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -33: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 33: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBeta @@ -40710,93 +40751,93 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 33: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -33: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -33: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords -33: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -33: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 33: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 33: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -33: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (14 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (4 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (10 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -33: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (3 ms) 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) +33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (7 ms) 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 33: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions -33: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -33: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -33: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching -33: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean -33: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters -33: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 33: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame -33: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -33: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -33: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (7 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -33: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -33: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 33: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables @@ -40804,16 +40845,16 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups -33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -33: [----------] 66 tests from SelectionCollectionDataTest (43 ms total) +33: [----------] 66 tests from SelectionCollectionDataTest (102 ms total) 33: 33: [----------] 17 tests from SelectionOptionTest 33: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 33: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -33: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) +33: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 33: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 33: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired @@ -40821,7 +40862,7 @@ 33: [ RUN ] SelectionOptionTest.ChecksEmptySelections 33: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 33: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections -33: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) +33: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooManySelections 33: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewSelections @@ -40844,33 +40885,33 @@ 33: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 33: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -33: [----------] 17 tests from SelectionOptionTest (3 ms total) +33: [----------] 17 tests from SelectionOptionTest (6 ms total) 33: 33: [----------] 9 tests from SelectionFileOptionTest 33: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 33: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions -33: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet -33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 33: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 33: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) +33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles -33: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -33: [----------] 9 tests from SelectionFileOptionTest (2 ms total) +33: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms) +33: [----------] 9 tests from SelectionFileOptionTest (3 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 190 tests from 10 test cases ran. (166 ms total) +33: [==========] 190 tests from 10 test cases ran. (271 ms total) 33: [ PASSED ] 190 tests. -33/40 Test #33: SelectionUnitTests ............... Passed 0.19 sec +33/40 Test #33: SelectionUnitTests ............... Passed 0.30 sec test 34 Start 34: TrajectoryAnalysisUnitTests @@ -40914,7 +40955,7 @@ 34: Total number of atoms in clusters = 8 34: cmid: 1, cmax: 6, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 -34: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (2 ms) +34: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (1 ms) 34: [ RUN ] ClustsizeTest.MolCSize 34: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -40924,11 +40965,11 @@ 34: cmid: 2, cmax: 4, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 34: 50%100%[ OK ] ClustsizeTest.MolCSize (2 ms) -34: [----------] 5 tests from ClustsizeTest (9 ms total) +34: [----------] 5 tests from ClustsizeTest (8 ms total) 34: 34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (0 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 34: Reading frames from gro file 'Test system', 8 atoms. 34: Reading frame 0 time 0.000 @@ -40947,7 +40988,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (4 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (3 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 34: Reading frames from gro file 'Test system', 8 atoms. 34: Reading frame 0 time 0.000 @@ -41020,7 +41061,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorPairAngles (3 ms) +34: [ OK ] AngleModuleTest.ComputesVectorPairAngles (4 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41037,7 +41078,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (2 ms) +34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (3 ms) 34: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41054,7 +41095,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (3 ms) +34: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (4 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41071,7 +41112,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (2 ms) +34: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (3 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 34: Reading frames from gro file 'Test system for different angles', 33 atoms. 34: Reading frame 0 time 0.000 @@ -41107,7 +41148,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesMultipleAngles (3 ms) +34: [ OK ] AngleModuleTest.ComputesMultipleAngles (5 ms) 34: [ RUN ] AngleModuleTest.HandlesDynamicSelections 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41141,7 +41182,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (2 ms) +34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (4 ms) 34: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41158,8 +41199,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (3 ms) -34: [----------] 11 tests from AngleModuleTest (32 ms total) +34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (4 ms) +34: [----------] 11 tests from AngleModuleTest (42 ms total) 34: 34: [----------] 3 tests from DistanceModuleTest 34: [ RUN ] DistanceModuleTest.ComputesDistances @@ -41182,7 +41223,7 @@ 34: Number of samples: 5 34: Average distance: 1.43246 nm 34: Standard deviation: 0.96700 nm -34: [ OK ] DistanceModuleTest.ComputesDistances (3 ms) +34: [ OK ] DistanceModuleTest.ComputesDistances (5 ms) 34: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41207,7 +41248,7 @@ 34: Number of samples: 4 34: Average distance: 1.81066 nm 34: Standard deviation: 0.79289 nm -34: [ OK ] DistanceModuleTest.ComputesMultipleDistances (4 ms) +34: [ OK ] DistanceModuleTest.ComputesMultipleDistances (5 ms) 34: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41228,8 +41269,8 @@ 34: Number of samples: 3 34: Average distance: 1.72076 nm 34: Standard deviation: 1.24839 nm -34: [ OK ] DistanceModuleTest.HandlesDynamicSelections (3 ms) -34: [----------] 3 tests from DistanceModuleTest (10 ms total) +34: [ OK ] DistanceModuleTest.HandlesDynamicSelections (5 ms) +34: [----------] 3 tests from DistanceModuleTest (15 ms total) 34: 34: [----------] 2 tests from FreeVolumeModuleTest 34: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -41293,7 +41334,7 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 34: Fractional free volume 0.194 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (98 ms) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (136 ms) 34: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -41345,8 +41386,8 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 34: Fractional free volume 0.200 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (99 ms) -34: [----------] 2 tests from FreeVolumeModuleTest (197 ms total) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (139 ms) +34: [----------] 2 tests from FreeVolumeModuleTest (275 ms total) 34: 34: [----------] 7 tests from PairDistanceModuleTest 34: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -41382,7 +41423,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (4 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41399,7 +41440,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (4 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41416,7 +41457,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (4 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41433,7 +41474,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (4 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41450,7 +41491,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (3 ms) +34: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (4 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41467,8 +41508,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (2 ms) -34: [----------] 7 tests from PairDistanceModuleTest (19 ms total) +34: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (3 ms) +34: [----------] 7 tests from PairDistanceModuleTest (26 ms total) 34: 34: [----------] 5 tests from RdfModuleTest 34: [ RUN ] RdfModuleTest.BasicTest @@ -41487,12 +41528,12 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.BasicTest (24 ms) +34: [ OK ] RdfModuleTest.BasicTest (31 ms) 34: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 34: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 34: Reading frame 0 time 0.000 Last frame 0 time 0.000 34: Analyzed 1 frames, last time 0.000 -34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (16 ms) +34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (21 ms) 34: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41509,7 +41550,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (25 ms) +34: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (31 ms) 34: [ RUN ] RdfModuleTest.CalculatesSurf 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41526,7 +41567,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.CalculatesSurf (14 ms) +34: [ OK ] RdfModuleTest.CalculatesSurf (19 ms) 34: [ RUN ] RdfModuleTest.CalculatesXY 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41543,8 +41584,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.CalculatesXY (26 ms) -34: [----------] 5 tests from RdfModuleTest (105 ms total) +34: [ OK ] RdfModuleTest.CalculatesXY (35 ms) +34: [----------] 5 tests from RdfModuleTest (137 ms total) 34: 34: [----------] 5 tests from SasaModuleTest 34: [ RUN ] SasaModuleTest.BasicTest @@ -41591,7 +41632,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.BasicTest (12 ms) +34: [ OK ] SasaModuleTest.BasicTest (20 ms) 34: [ RUN ] SasaModuleTest.HandlesSelectedResidues 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -41636,7 +41677,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesSelectedResidues (8 ms) +34: [ OK ] SasaModuleTest.HandlesSelectedResidues (12 ms) 34: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -41681,7 +41722,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (7 ms) +34: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (11 ms) 34: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -41726,7 +41767,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (10 ms) +34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (14 ms) 34: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -41771,8 +41812,8 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (9 ms) -34: [----------] 5 tests from SasaModuleTest (46 ms total) +34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (28 ms) +34: [----------] 5 tests from SasaModuleTest (86 ms total) 34: 34: [----------] 8 tests from SelectModuleTest 34: [ RUN ] SelectModuleTest.BasicTest @@ -41793,7 +41834,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.BasicTest (5 ms) +34: [ OK ] SelectModuleTest.BasicTest (9 ms) 34: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -41812,7 +41853,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (4 ms) +34: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (6 ms) 34: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -41831,7 +41872,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (4 ms) +34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (5 ms) 34: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -41850,7 +41891,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (5 ms) +34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (6 ms) 34: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -41869,7 +41910,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (4 ms) +34: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (5 ms) 34: [ RUN ] SelectModuleTest.NormalizesSizes 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41903,7 +41944,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.WritesResidueNumbers (3 ms) +34: [ OK ] SelectModuleTest.WritesResidueNumbers (4 ms) 34: [ RUN ] SelectModuleTest.WritesResidueIndices 34: 34: WARNING: If there are molecules in the input trajectory file @@ -41921,7 +41962,7 @@ 34: files if necessary. 34: 34: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) -34: [----------] 8 tests from SelectModuleTest (32 ms total) +34: [----------] 8 tests from SelectModuleTest (43 ms total) 34: 34: [----------] 10 tests from SurfaceAreaTest 34: [ RUN ] SurfaceAreaTest.ComputesSinglePoint @@ -41941,10 +41982,10 @@ 34: [ RUN ] SurfaceAreaTest.Computes100Points 34: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC -34: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (2 ms) +34: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (3 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC -34: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (3 ms) -34: [----------] 10 tests from SurfaceAreaTest (11 ms total) +34: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (4 ms) +34: [----------] 10 tests from SurfaceAreaTest (12 ms total) 34: 34: [----------] 4 tests from TopologyInformation 34: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile @@ -41958,7 +41999,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TopologyInformation.WorksWithGroFile (4 ms) +34: [ OK ] TopologyInformation.WorksWithGroFile (5 ms) 34: [ RUN ] TopologyInformation.WorksWithPdbFile 34: 34: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -41968,7 +42009,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TopologyInformation.WorksWithPdbFile (5 ms) +34: [ OK ] TopologyInformation.WorksWithPdbFile (4 ms) 34: [ RUN ] TopologyInformation.WorksWithTprFromPdbFile 34: 34: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary/TopologyInformation_WorksWithTprFromPdbFile_lysozyme.mdp, line 1]: @@ -41982,7 +42023,7 @@ 34: For a correct single-point energy evaluation with nsteps = 0, use 34: continuation = yes to avoid constraining the input coordinates. 34: -34: Setting the LD random seed to 326578864 +34: Setting the LD random seed to -219258715 34: Generated 330891 of the 330891 non-bonded parameter combinations 34: Generating 1-4 interactions: fudge = 0.5 34: Generated 330891 of the 330891 1-4 parameter combinations @@ -42017,8 +42058,8 @@ 34: There are: 10 Protein residues 34: Analysing Protein... 34: This run will generate roughly 0 Mb of data -34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (239 ms) -34: [----------] 4 tests from TopologyInformation (248 ms total) +34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (279 ms) +34: [----------] 4 tests from TopologyInformation (288 ms total) 34: 34: [----------] 4 tests from TrajectoryModuleTest 34: [ RUN ] TrajectoryModuleTest.BasicTest @@ -42058,7 +42099,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.PlotsXOnly (3 ms) +34: [ OK ] TrajectoryModuleTest.PlotsXOnly (5 ms) 34: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -42097,17 +42138,17 @@ 34: files if necessary. 34: 34: [ OK ] TrajectoryModuleTest.HandlesNoForces (3 ms) -34: [----------] 4 tests from TrajectoryModuleTest (14 ms total) +34: [----------] 4 tests from TrajectoryModuleTest (20 ms total) 34: 34: [----------] 5 tests from UnionFinderTest 34: [ RUN ] UnionFinderTest.WorksEmpty 34: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 34: [ RUN ] UnionFinderTest.BasicMerges -34: [ OK ] UnionFinderTest.BasicMerges (1 ms) +34: [ OK ] UnionFinderTest.BasicMerges (0 ms) 34: [ RUN ] UnionFinderTest.LargerMerges 34: [ OK ] UnionFinderTest.LargerMerges (0 ms) 34: [ RUN ] UnionFinderTest.LongRightMerge -34: [ OK ] UnionFinderTest.LongRightMerge (0 ms) +34: [ OK ] UnionFinderTest.LongRightMerge (1 ms) 34: [ RUN ] UnionFinderTest.LongLeftMerge 34: [ OK ] UnionFinderTest.LongLeftMerge (0 ms) 34: [----------] 5 tests from UnionFinderTest (1 ms total) @@ -42118,9 +42159,9 @@ 34: [----------] 1 test from MappedUnionFinderTest (0 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 74 tests from 14 test cases ran. (732 ms total) +34: [==========] 74 tests from 14 test cases ran. (961 ms total) 34: [ PASSED ] 74 tests. -34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 0.75 sec +34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 0.98 sec test 35 Start 35: EnergyAnalysisUnitTests @@ -42137,8 +42178,8 @@ 35: 35: 35: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -35: [ OK ] DhdlTest.ExtractDhdl (8 ms) -35: [----------] 1 test from DhdlTest (9 ms total) +35: [ OK ] DhdlTest.ExtractDhdl (54 ms) +35: [----------] 1 test from DhdlTest (55 ms total) 35: 35: [----------] 1 test from OriresTest 35: [ RUN ] OriresTest.ExtractOrires @@ -42149,8 +42190,8 @@ 35: End your selection with 0 35: Selecting all 7 orientation restraints 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -35: [ OK ] OriresTest.ExtractOrires (7 ms) -35: [----------] 1 test from OriresTest (7 ms total) +35: [ OK ] OriresTest.ExtractOrires (31 ms) +35: [----------] 1 test from OriresTest (31 ms total) 35: 35: [----------] 3 tests from EnergyTest 35: [ RUN ] EnergyTest.ExtractEnergy @@ -42240,8 +42281,8 @@ 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 35: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -35: [ OK ] EnergyTest.ExtractEnergyMixed (3 ms) -35: [----------] 3 tests from EnergyTest (9 ms total) +35: [ OK ] EnergyTest.ExtractEnergyMixed (4 ms) +35: [----------] 3 tests from EnergyTest (10 ms total) 35: 35: [----------] 2 tests from ViscosityTest 35: [ RUN ] ViscosityTest.EinsteinViscosity @@ -42265,7 +42306,7 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosity (95 ms) +35: [ OK ] ViscosityTest.EinsteinViscosity (112 ms) 35: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -42287,13 +42328,13 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (83 ms) -35: [----------] 2 tests from ViscosityTest (180 ms total) +35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (111 ms) +35: [----------] 2 tests from ViscosityTest (223 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 7 tests from 4 test cases ran. (205 ms total) +35: [==========] 7 tests from 4 test cases ran. (319 ms total) 35: [ PASSED ] 7 tests. -35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.22 sec +35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.33 sec test 36 Start 36: ToolUnitTests @@ -42319,7 +42360,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to -576469863 +36: Setting the LD random seed to -72879221 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -42353,7 +42394,7 @@ 36: There are: 10 Protein residues 36: Analysing Protein... 36: This run will generate roughly 0 Mb of data -36: [ OK ] ReportMethodsTest.WritesCorrectInformation (229 ms) +36: [ OK ] ReportMethodsTest.WritesCorrectInformation (278 ms) 36: [ RUN ] ReportMethodsTest.ToolEndToEndTest 36: 36: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/ReportMethodsTest_ToolEndToEndTest_lysozyme.mdp, line 1]: @@ -42367,7 +42408,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to 2023121279 +36: Setting the LD random seed to 219279249 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -42411,13 +42452,13 @@ 36: The Cut-off algorithm was used for electrostatic interactions. 36: with a cut-off of 1 nm. 36: A single cut-off of 1.1 nm was used for Van der Waals interactions. -36: [ OK ] ReportMethodsTest.ToolEndToEndTest (221 ms) -36: [----------] 4 tests from ReportMethodsTest (450 ms total) +36: [ OK ] ReportMethodsTest.ToolEndToEndTest (280 ms) +36: [----------] 4 tests from ReportMethodsTest (558 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 4 tests from 1 test case ran. (450 ms total) +36: [==========] 4 tests from 1 test case ran. (558 ms total) 36: [ PASSED ] 4 tests. -36/40 Test #36: ToolUnitTests .................... Passed 0.46 sec +36/40 Test #36: ToolUnitTests .................... Passed 0.58 sec test 37 Start 37: MdrunTests @@ -42439,7 +42480,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 2049295699 +37: Setting the LD random seed to -1294692788 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42463,8 +42504,8 @@ 37: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] GromppTest.EmptyMdpFileWorks (22 ms) -37: [----------] 1 test from GromppTest (22 ms total) +37: [ OK ] GromppTest.EmptyMdpFileWorks (27 ms) +37: [----------] 1 test from GromppTest (27 ms total) 37: 37: [----------] 1 test from ImdTest 37: [ RUN ] ImdTest.ImdCanRun @@ -42473,7 +42514,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to -682801115 +37: Setting the LD random seed to -1643962151 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -42512,7 +42553,7 @@ 37: IMD: Pulling from IMD remote is enabled (-imdpull). 37: IMD: Turning on IMD - port for incoming requests is 0. 37: IMD: Setting up incoming socket. -37: IMD: Listening for IMD connection on port 54527. +37: IMD: Listening for IMD connection on port 55607. 37: IMD: -imdwait not set, starting simulation. 37: starting mdrun 'spc2' 37: 2 steps, 0.0 ps. @@ -42526,11 +42567,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.004 0.002 195.1 +37: Time: 0.006 0.003 196.5 37: (ns/day) (hour/ns) -37: Performance: 461.102 0.052 -37: [ OK ] ImdTest.ImdCanRun (51 ms) -37: [----------] 1 test from ImdTest (51 ms total) +37: Performance: 342.630 0.070 +37: [ OK ] ImdTest.ImdCanRun (88 ms) +37: [----------] 1 test from ImdTest (88 ms total) 37: 37: [----------] 2 tests from PmeTest 37: [ RUN ] PmeTest.ReproducesEnergies @@ -42541,7 +42582,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 530123380 +37: Setting the LD random seed to -1409137538 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42592,9 +42633,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.048 0.024 199.6 +37: Time: 0.045 0.023 199.4 37: (ns/day) (hour/ns) -37: Performance: 76.150 0.315 +37: Performance: 80.501 0.298 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). @@ -42619,9 +42660,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.028 0.014 199.4 +37: Time: 0.053 0.027 199.4 37: (ns/day) (hour/ns) -37: Performance: 129.660 0.185 +37: Performance: 67.807 0.354 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). @@ -42646,11 +42687,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.027 0.014 199.3 +37: Time: 0.071 0.035 199.6 37: (ns/day) (hour/ns) -37: Performance: 132.703 0.181 +37: Performance: 51.345 0.467 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (258 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (394 ms) 37: [ RUN ] PmeTest.ScalesTheBox 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -42664,7 +42705,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 935329258 +37: Setting the LD random seed to -2043689835 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42707,9 +42748,9 @@ 37: 0 steps, 0.0 ps. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.009 0.004 196.1 +37: Time: 0.013 0.006 196.6 37: (ns/day) (hour/ns) -37: Performance: 19.736 1.216 +37: Performance: 13.410 1.790 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.269 K 37: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -42718,8 +42759,8 @@ 37: Calculating fourier grid dimensions for X Y Z 37: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 37: This run will generate roughly 0 Mb of data -37: [ OK ] PmeTest.ScalesTheBox (459 ms) -37: [----------] 2 tests from PmeTest (717 ms total) +37: [ OK ] PmeTest.ScalesTheBox (641 ms) +37: [----------] 2 tests from PmeTest (1035 ms total) 37: 37: [----------] 1 test from CompelTest 37: [ RUN ] CompelTest.SwapCanRun @@ -42728,7 +42769,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to 733651606 +37: Setting the LD random seed to -624290966 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -42791,13 +42832,13 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 45 % of the run time was spent in pair search, +37: NOTE: 46 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.467 0.234 199.9 +37: Time: 0.627 0.313 199.9 37: (ns/day) (hour/ns) -37: Performance: 5.547 4.327 +37: Performance: 4.136 5.803 37: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). 37: The current CPU can measure timings more accurately than the code in @@ -42826,15 +42867,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 35 % of the run time was spent in pair search, +37: NOTE: 32 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.357 0.179 199.9 +37: Time: 0.462 0.231 199.9 37: (ns/day) (hour/ns) -37: Performance: 7.257 3.307 -37: [ OK ] CompelTest.SwapCanRun (782 ms) -37: [----------] 1 test from CompelTest (782 ms total) +37: Performance: 5.612 4.277 +37: [ OK ] CompelTest.SwapCanRun (1105 ms) +37: [----------] 1 test from CompelTest (1105 ms total) 37: 37: [----------] 6 tests from BondedInteractionsTest 37: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -42850,7 +42891,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -48178929 +37: Setting the LD random seed to 1685772867 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -42893,15 +42934,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 23 % of the run time was spent in pair search, +37: NOTE: 22 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 192.1 +37: Time: 0.001 0.000 190.7 37: (ns/day) (hour/ns) -37: Performance: 396.052 0.061 +37: Performance: 296.553 0.081 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalBondWorks (5 ms) +37: [ OK ] BondedInteractionsTest.NormalBondWorks (6 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: @@ -42915,7 +42956,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1524532607 +37: Setting the LD random seed to -443017713 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -42958,15 +42999,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 21 % of the run time was spent in pair search, +37: NOTE: 18 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 190.5 +37: Time: 0.001 0.000 190.3 37: (ns/day) (hour/ns) -37: Performance: 464.005 0.052 +37: Performance: 224.250 0.107 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedBondWorks (5 ms) +37: [ OK ] BondedInteractionsTest.TabulatedBondWorks (17 ms) 37: [ RUN ] BondedInteractionsTest.NormalAngleWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]: @@ -42980,7 +43021,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 846075989 +37: Setting the LD random seed to -1990828534 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -43023,15 +43064,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 20 % of the run time was spent in pair search, +37: NOTE: 19 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 190.5 +37: Time: 0.001 0.000 188.6 37: (ns/day) (hour/ns) -37: Performance: 478.716 0.050 +37: Performance: 195.252 0.123 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalAngleWorks (4 ms) +37: [ OK ] BondedInteractionsTest.NormalAngleWorks (9 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: @@ -43045,7 +43086,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 18096468 +37: Setting the LD random seed to -286310558 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -43088,15 +43129,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 20 % of the run time was spent in pair search, +37: NOTE: 19 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 190.8 +37: Time: 0.001 0.000 190.4 37: (ns/day) (hour/ns) -37: Performance: 464.600 0.052 +37: Performance: 285.345 0.084 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (5 ms) +37: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]: @@ -43110,7 +43151,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1426529406 +37: Setting the LD random seed to 496292186 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -43144,15 +43185,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 25 % of the run time was spent in pair search, +37: NOTE: 27 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 192.3 +37: Time: 0.001 0.000 192.6 37: (ns/day) (hour/ns) -37: Performance: 379.067 0.063 +37: Performance: 254.486 0.094 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalDihedralWorks (4 ms) +37: [ OK ] BondedInteractionsTest.NormalDihedralWorks (6 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]: @@ -43166,7 +43207,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 764536226 +37: Setting the LD random seed to 59454672 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -43200,16 +43241,16 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 35 % of the run time was spent in pair search, +37: NOTE: 26 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 192.5 +37: Time: 0.001 0.000 191.3 37: (ns/day) (hour/ns) -37: Performance: 358.091 0.067 +37: Performance: 286.926 0.084 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (5 ms) -37: [----------] 6 tests from BondedInteractionsTest (28 ms total) +37: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (8 ms) +37: [----------] 6 tests from BondedInteractionsTest (56 ms total) 37: 37: [----------] 2 tests from MdrunTerminationTest 37: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -43220,7 +43261,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1131907227 +37: Setting the LD random seed to 1642397484 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -43256,20 +43297,20 @@ 37: starting mdrun 'spc2' 37: 100 steps, 0.1 ps. 37: -37: Step 0: Run time exceeded 0.000 hours, will terminate the run within 2 steps +37: Step 3: Run time exceeded 0.000 hours, will terminate the run within 2 steps 37: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 37: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data 37: -37: NOTE: 25 % of the run time was spent in pair search, +37: NOTE: 11 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 194.7 +37: Time: 0.003 0.002 194.0 37: (ns/day) (hour/ns) -37: Performance: 109.765 0.219 +37: Performance: 262.828 0.091 37: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). 37: The current CPU can measure timings more accurately than the code in @@ -43290,15 +43331,15 @@ 37: This can lead to significant performance degradation. 37: Consider using -pin on (and -pinoffset in case you run multiple jobs). 37: starting mdrun 'spc2' -37: 3 steps, 0.0 ps (continuing from step 1, 0.0 ps). +37: 6 steps, 0.0 ps (continuing from step 4, 0.0 ps). 37: 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 193.5 +37: Time: 0.003 0.002 191.6 37: (ns/day) (hour/ns) -37: Performance: 228.108 0.105 -37: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (10 ms) +37: Performance: 154.164 0.156 +37: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (11 ms) 37: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp, line 6]: @@ -43307,7 +43348,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -620715344 +37: Setting the LD random seed to 271820488 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -43343,7 +43384,7 @@ 37: starting mdrun 'spc2' 37: 100 steps, 0.1 ps. 37: -37: Step 6: Run time exceeded 0.000 hours, will terminate the run within 2 steps +37: Step 4: Run time exceeded 0.000 hours, will terminate the run within 2 steps 37: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 37: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm @@ -43354,9 +43395,9 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 194.1 +37: Time: 0.003 0.002 193.5 37: (ns/day) (hour/ns) -37: Performance: 517.420 0.046 +37: Performance: 333.435 0.072 37: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 37: log). 37: The current CPU can measure timings more accurately than the code in @@ -43378,17 +43419,17 @@ 37: This can lead to significant performance degradation. 37: Consider using -pin on (and -pinoffset in case you run multiple jobs). 37: starting mdrun 'spc2' -37: 9 steps, 0.0 ps (continuing from step 7, 0.0 ps). +37: 7 steps, 0.0 ps (continuing from step 5, 0.0 ps). 37: Checkpoint file is from part 1, new output files will be suffixed '.part0002'. 37: 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 197.9 +37: Time: 0.003 0.001 197.5 37: (ns/day) (hour/ns) -37: Performance: 233.447 0.103 -37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (8 ms) -37: [----------] 2 tests from MdrunTerminationTest (18 ms total) +37: Performance: 187.668 0.128 +37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (12 ms) +37: [----------] 2 tests from MdrunTerminationTest (23 ms total) 37: 37: [----------] 4 tests from MimicTest 37: [ RUN ] MimicTest.OneQuantumMol @@ -43404,7 +43445,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 819283697 +37: Setting the LD random seed to -1497703995 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -43446,16 +43487,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 32 % of the run time was spent in pair search, +37: NOTE: 37 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 191.9 +37: Time: 0.001 0.000 192.3 37: (ns/day) (hour/ns) -37: Performance: 384.293 0.062 +37: Performance: 296.311 0.081 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.OneQuantumMol (4 ms) +37: [ OK ] MimicTest.OneQuantumMol (6 ms) 37: [ RUN ] MimicTest.AllQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -43469,7 +43510,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 670565165 +37: Setting the LD random seed to 587149238 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -43511,16 +43552,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 40 % of the run time was spent in pair search, +37: NOTE: 43 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 192.5 +37: Time: 0.001 0.000 192.6 37: (ns/day) (hour/ns) -37: Performance: 413.213 0.058 +37: Performance: 252.711 0.095 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.AllQuantumMol (5 ms) +37: [ OK ] MimicTest.AllQuantumMol (6 ms) 37: [ RUN ] MimicTest.TwoQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -43534,7 +43575,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 2099540594 +37: Setting the LD random seed to -736044172 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -43576,16 +43617,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 42 % of the run time was spent in pair search, +37: NOTE: 38 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.000 0.000 192.5 +37: Time: 0.001 0.000 191.8 37: (ns/day) (hour/ns) -37: Performance: 398.667 0.060 +37: Performance: 264.131 0.091 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.TwoQuantumMol (4 ms) +37: [ OK ] MimicTest.TwoQuantumMol (5 ms) 37: [ RUN ] MimicTest.BondCuts 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp, line 3]: @@ -43599,7 +43640,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 485946462 +37: Setting the LD random seed to -1214979362 37: Generated 2211 of the 2211 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 2211 of the 2211 1-4 parameter combinations @@ -43641,25 +43682,25 @@ 37: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 25 % of the run time was spent in pair search, +37: NOTE: 29 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 195.0 +37: Time: 0.001 0.001 194.6 37: (ns/day) (hour/ns) -37: Performance: 201.327 0.119 +37: Performance: 154.142 0.156 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 37: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.BondCuts (14 ms) -37: [----------] 4 tests from MimicTest (27 ms total) +37: [ OK ] MimicTest.BondCuts (19 ms) +37: [----------] 4 tests from MimicTest (36 ms total) 37: 37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -37: Setting the LD random seed to 9871054 +37: Setting the LD random seed to -310721156 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -43707,9 +43748,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 194.6 +37: Time: 0.003 0.002 193.9 37: (ns/day) (hour/ns) -37: Performance: 125.091 0.192 +37: Performance: 101.866 0.236 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -43724,9 +43765,9 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (6 ms) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (8 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -37: Setting the LD random seed to -640825032 +37: Setting the LD random seed to -2108392144 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -43774,9 +43815,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 194.0 +37: Time: 0.003 0.002 193.6 37: (ns/day) (hour/ns) -37: Performance: 140.733 0.171 +37: Performance: 104.495 0.230 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -43791,9 +43832,9 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (5 ms) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (7 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -37: Setting the LD random seed to 991723271 +37: Setting the LD random seed to 288496818 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -43841,9 +43882,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 192.9 +37: Time: 0.003 0.002 193.5 37: (ns/day) (hour/ns) -37: Performance: 141.144 0.170 +37: Performance: 106.506 0.225 37: Reading frame 0 time 0.000 37: # Atoms 3 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -43858,8 +43899,8 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (6 ms) -37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (17 ms total) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (8 ms) +37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (23 ms total) 37: 37: [----------] 3 tests from Checking/InitialConstraintsTest 37: [ RUN ] Checking/InitialConstraintsTest.Works/0 @@ -43870,7 +43911,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -85553210 +37: Setting the LD random seed to -1839310775 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -43919,11 +43960,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 192.8 +37: Time: 0.004 0.002 193.8 37: (ns/day) (hour/ns) -37: Performance: 127.601 0.188 +37: Performance: 85.098 0.282 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (22 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (33 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: @@ -43932,7 +43973,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -693199451 +37: Setting the LD random seed to -57273068 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -43981,11 +44022,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.005 0.003 191.9 +37: Time: 0.004 0.002 192.0 37: (ns/day) (hour/ns) -37: Performance: 63.868 0.376 +37: Performance: 83.915 0.286 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (27 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (32 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]: @@ -43999,7 +44040,7 @@ 37: Integrator method md-vv-avek is implemented primarily for validation 37: purposes; for molecular dynamics, you should probably be using md or md-vv 37: -37: Setting the LD random seed to 2094791729 +37: Setting the LD random seed to -374842473 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -44048,12 +44089,12 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 192.7 +37: Time: 0.004 0.002 192.7 37: (ns/day) (hour/ns) -37: Performance: 110.941 0.216 +37: Performance: 86.068 0.279 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (29 ms) -37: [----------] 3 tests from Checking/InitialConstraintsTest (78 ms total) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (31 ms) +37: [----------] 3 tests from Checking/InitialConstraintsTest (96 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/Trajectories 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 @@ -44064,7 +44105,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1756211053 +37: Setting the LD random seed to 668622308 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -44107,10 +44148,10 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.011 0.006 198.0 +37: Time: 0.015 0.008 197.9 37: (ns/day) (hour/ns) -37: Performance: 104.728 0.229 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (33 ms) +37: Performance: 78.707 0.305 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (39 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: @@ -44119,7 +44160,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 806364781 +37: Setting the LD random seed to -961627957 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -44162,10 +44203,10 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.012 0.006 198.1 +37: Time: 0.015 0.008 197.8 37: (ns/day) (hour/ns) -37: Performance: 99.226 0.242 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (32 ms) +37: Performance: 79.980 0.300 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (40 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: @@ -44174,7 +44215,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -229815235 +37: Setting the LD random seed to -647550329 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -44217,11 +44258,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.008 0.004 197.5 +37: Time: 0.011 0.006 197.4 37: (ns/day) (hour/ns) -37: Performance: 143.504 0.167 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (30 ms) -37: [----------] 3 tests from MdrunCanWrite/Trajectories (95 ms total) +37: Performance: 105.551 0.227 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (40 ms) +37: [----------] 3 tests from MdrunCanWrite/Trajectories (119 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/NptTrajectories 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 @@ -44232,7 +44273,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1779101632 +37: Setting the LD random seed to 1997494257 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -44275,10 +44316,10 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 191.0 +37: Time: 0.003 0.002 191.7 37: (ns/day) (hour/ns) -37: Performance: 206.332 0.116 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (26 ms) +37: Performance: 152.649 0.157 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (34 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: @@ -44287,7 +44328,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1544355264 +37: Setting the LD random seed to 895541447 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -44330,10 +44371,10 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 192.2 +37: Time: 0.004 0.002 191.7 37: (ns/day) (hour/ns) -37: Performance: 206.058 0.116 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (27 ms) +37: Performance: 136.168 0.176 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (35 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: @@ -44342,7 +44383,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 2136344912 +37: Setting the LD random seed to -674550571 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -44385,16 +44426,16 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 191.1 +37: Time: 0.004 0.002 191.4 37: (ns/day) (hour/ns) -37: Performance: 188.156 0.128 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (27 ms) -37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (80 ms total) +37: Performance: 134.367 0.179 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (35 ms) +37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (104 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 29 tests from 11 test cases ran. (1915 ms total) +37: [==========] 29 tests from 11 test cases ran. (2713 ms total) 37: [ PASSED ] 29 tests. -37/40 Test #37: MdrunTests ....................... Passed 1.94 sec +37/40 Test #37: MdrunTests ....................... Passed 2.74 sec test 38 Start 38: MdrunNonIntegratorTests @@ -44463,7 +44504,7 @@ 38: Norm of force = 8.77219867200359e+01 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (229 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (411 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -44527,7 +44568,7 @@ 38: Norm of force = 1.84530029788203e+02 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (219 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (361 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -44589,7 +44630,7 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (113 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (185 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -44658,7 +44699,7 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (116 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (186 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -44730,7 +44771,7 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (54 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (111 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -44809,8 +44850,8 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (61 ms) -38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (793 ms total) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (109 ms) +38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1363 ms total) 38: 38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -44862,7 +44903,7 @@ 38: Norm of force = 1.63839399694378e+00 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (48 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (87 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -44915,7 +44956,7 @@ 38: Norm of force = 1.05251679559130e+00 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (47 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (101 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -44978,7 +45019,7 @@ 38: Norm of force = 1.05251679559130e+00 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (44 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (80 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -45039,7 +45080,7 @@ 38: Norm of force = 4.62274878672162e+03 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (118 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (196 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -45103,7 +45144,7 @@ 38: Norm of force = 3.61390332570589e+03 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (120 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (189 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -45177,8 +45218,8 @@ 38: Norm of force = 1.01988549359680e+04 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (110 ms) -38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (487 ms total) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (171 ms) +38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (825 ms total) 38: 38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -45237,13 +45278,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 193.8 +38: Time: 0.004 0.002 192.8 38: (ns/day) (hour/ns) -38: Performance: 846.933 0.028 +38: Performance: 655.661 0.037 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45266,18 +45304,18 @@ 38: trr version: GMX_trn_file (double precision) 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 33 % of the run time was spent in pair search, +38: NOTE: 25 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.9 +38: Time: 0.002 0.001 195.6 38: (ns/day) (hour/ns) -38: Performance: 1730.018 0.014 +38: Performance: 1658.302 0.014 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (101 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (184 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp, line 28]: @@ -45334,13 +45372,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 13 % of the run time was spent in pair search, +38: NOTE: 12 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.6 +38: Time: 0.004 0.002 193.8 38: (ns/day) (hour/ns) -38: Performance: 732.184 0.033 +38: Performance: 686.341 0.035 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45362,18 +45400,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 32 % of the run time was spent in pair search, +38: NOTE: 28 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.6 +38: Time: 0.002 0.001 196.5 38: (ns/day) (hour/ns) -38: Performance: 1766.732 0.014 +38: Performance: 1539.763 0.016 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (110 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (193 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp, line 28]: @@ -45427,9 +45465,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.2 +38: Time: 0.005 0.003 194.0 38: (ns/day) (hour/ns) -38: Performance: 744.753 0.032 +38: Performance: 570.531 0.042 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45452,18 +45490,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 31 % of the run time was spent in pair search, +38: NOTE: 27 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.7 +38: Time: 0.002 0.001 196.4 38: (ns/day) (hour/ns) -38: Performance: 1908.486 0.013 +38: Performance: 1411.685 0.017 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (107 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (153 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp, line 28]: @@ -45517,9 +45555,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.002 196.0 +38: Time: 0.008 0.004 195.0 38: (ns/day) (hour/ns) -38: Performance: 618.906 0.039 +38: Performance: 376.403 0.064 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45542,18 +45580,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 32 % of the run time was spent in pair search, +38: NOTE: 25 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.7 +38: Time: 0.003 0.001 196.3 38: (ns/day) (hour/ns) -38: Performance: 1633.243 0.015 +38: Performance: 1147.438 0.021 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (113 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (161 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp, line 28]: @@ -45618,13 +45656,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 14 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.6 +38: Time: 0.006 0.003 195.8 38: (ns/day) (hour/ns) -38: Performance: 711.221 0.034 +38: Performance: 482.314 0.050 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45646,18 +45681,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 31 % of the run time was spent in pair search, +38: NOTE: 28 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.6 +38: Time: 0.002 0.001 195.7 38: (ns/day) (hour/ns) -38: Performance: 1568.379 0.015 +38: Performance: 1362.059 0.018 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (281 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (404 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp, line 28]: @@ -45722,13 +45757,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 13 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.6 +38: Time: 0.006 0.003 194.0 38: (ns/day) (hour/ns) -38: Performance: 652.813 0.037 +38: Performance: 513.682 0.047 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45750,18 +45782,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 33 % of the run time was spent in pair search, +38: NOTE: 28 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.9 +38: Time: 0.003 0.001 196.7 38: (ns/day) (hour/ns) -38: Performance: 1454.342 0.017 +38: Performance: 1151.728 0.021 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (286 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (442 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp, line 28]: @@ -45822,13 +45854,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 10 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.2 +38: Time: 0.005 0.002 193.7 38: (ns/day) (hour/ns) -38: Performance: 729.151 0.033 +38: Performance: 614.033 0.039 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45851,18 +45880,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 34 % of the run time was spent in pair search, +38: NOTE: 28 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 187.6 +38: Time: 0.003 0.001 196.6 38: (ns/day) (hour/ns) -38: Performance: 1390.967 0.017 +38: Performance: 1151.298 0.021 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (290 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (362 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp, line 28]: @@ -45924,9 +45953,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.6 +38: Time: 0.007 0.003 194.6 38: (ns/day) (hour/ns) -38: Performance: 667.309 0.036 +38: Performance: 429.100 0.056 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -45953,14 +45982,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 196.8 +38: Time: 0.002 0.001 196.5 38: (ns/day) (hour/ns) -38: Performance: 1553.352 0.015 +38: Performance: 1671.349 0.014 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (268 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (406 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp, line 28]: @@ -46043,9 +46072,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 195.9 +38: Time: 0.009 0.005 196.9 38: (ns/day) (hour/ns) -38: Performance: 354.444 0.068 +38: Performance: 318.410 0.075 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46067,18 +46096,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 21 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.5 +38: Time: 0.004 0.002 196.5 38: (ns/day) (hour/ns) -38: Performance: 748.917 0.032 +38: Performance: 713.527 0.034 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (109 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (169 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp, line 28]: @@ -46161,9 +46190,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 197.0 +38: Time: 0.011 0.006 195.5 38: (ns/day) (hour/ns) -38: Performance: 269.363 0.089 +38: Performance: 250.992 0.096 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46185,18 +46214,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 23 % of the run time was spent in pair search, +38: NOTE: 42 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.3 +38: Time: 0.004 0.002 197.2 38: (ns/day) (hour/ns) -38: Performance: 927.800 0.026 +38: Performance: 652.329 0.037 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (114 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (176 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp, line 28]: @@ -46274,13 +46303,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 10 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 197.3 +38: Time: 0.009 0.005 196.9 38: (ns/day) (hour/ns) -38: Performance: 327.970 0.073 +38: Performance: 312.546 0.077 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46303,18 +46329,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 26 % of the run time was spent in pair search, +38: NOTE: 21 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 197.7 +38: Time: 0.004 0.002 197.4 38: (ns/day) (hour/ns) -38: Performance: 1035.046 0.023 +38: Performance: 820.647 0.029 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (142 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (196 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp, line 28]: @@ -46393,9 +46419,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 197.8 +38: Time: 0.012 0.006 197.7 38: (ns/day) (hour/ns) -38: Performance: 249.781 0.096 +38: Performance: 235.218 0.102 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46418,19 +46444,19 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 26 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.7 +38: Time: 0.004 0.002 197.4 38: (ns/day) (hour/ns) -38: Performance: 917.848 0.026 +38: Performance: 695.091 0.035 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (147 ms) -38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (2068 ms total) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (198 ms) +38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (3045 ms total) 38: 38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -46501,9 +46527,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.6 +38: Time: 0.011 0.006 196.6 38: (ns/day) (hour/ns) -38: Performance: 350.173 0.069 +38: Performance: 255.108 0.094 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46525,18 +46551,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 15 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.1 +38: Time: 0.005 0.003 181.2 38: (ns/day) (hour/ns) -38: Performance: 697.215 0.034 +38: Performance: 494.112 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (128 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (181 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp, line 42]: @@ -46604,10 +46630,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 10 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.1 +38: Time: 0.013 0.007 195.0 38: (ns/day) (hour/ns) -38: Performance: 320.781 0.075 +38: Performance: 223.234 0.108 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46629,18 +46658,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 23 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.1 +38: Time: 0.004 0.002 196.4 38: (ns/day) (hour/ns) -38: Performance: 879.331 0.027 +38: Performance: 743.225 0.032 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (122 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (205 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp, line 42]: @@ -46709,9 +46738,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 196.4 +38: Time: 0.010 0.005 196.0 38: (ns/day) (hour/ns) -38: Performance: 298.088 0.081 +38: Performance: 279.951 0.086 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46733,18 +46762,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.0 +38: Time: 0.004 0.002 196.9 38: (ns/day) (hour/ns) -38: Performance: 807.947 0.030 +38: Performance: 707.707 0.034 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (116 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (162 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp, line 42]: @@ -46812,10 +46841,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 12 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.9 +38: Time: 0.011 0.006 196.4 38: (ns/day) (hour/ns) -38: Performance: 310.592 0.077 +38: Performance: 261.463 0.092 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46837,18 +46869,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.002 196.7 +38: Time: 0.004 0.002 196.8 38: (ns/day) (hour/ns) -38: Performance: 628.376 0.038 +38: Performance: 717.433 0.033 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (125 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (168 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp, line 42]: @@ -46917,9 +46949,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 196.9 +38: Time: 0.012 0.006 196.5 38: (ns/day) (hour/ns) -38: Performance: 267.364 0.090 +38: Performance: 240.282 0.100 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -46941,18 +46973,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 195.6 +38: Time: 0.005 0.002 195.8 38: (ns/day) (hour/ns) -38: Performance: 653.575 0.037 +38: Performance: 620.028 0.039 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (129 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (160 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp, line 42]: @@ -47020,10 +47052,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 10 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 196.6 +38: Time: 0.012 0.006 195.1 38: (ns/day) (hour/ns) -38: Performance: 326.597 0.073 +38: Performance: 241.147 0.100 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47045,18 +47080,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 23 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.8 +38: Time: 0.005 0.002 189.9 38: (ns/day) (hour/ns) -38: Performance: 760.943 0.032 +38: Performance: 614.952 0.039 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (130 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (162 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp, line 42]: @@ -47125,9 +47160,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 196.5 +38: Time: 0.019 0.010 197.6 38: (ns/day) (hour/ns) -38: Performance: 301.620 0.080 +38: Performance: 152.596 0.157 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47149,18 +47184,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 15 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.1 +38: Time: 0.006 0.003 196.0 38: (ns/day) (hour/ns) -38: Performance: 704.148 0.034 +38: Performance: 486.619 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (131 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (176 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp, line 42]: @@ -47229,9 +47264,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.4 +38: Time: 0.011 0.005 196.2 38: (ns/day) (hour/ns) -38: Performance: 320.731 0.075 +38: Performance: 270.142 0.089 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47253,18 +47288,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.3 +38: Time: 0.005 0.002 197.3 38: (ns/day) (hour/ns) -38: Performance: 837.720 0.029 +38: Performance: 637.743 0.038 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (122 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (174 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp, line 42]: @@ -47333,9 +47368,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.5 +38: Time: 0.012 0.006 196.1 38: (ns/day) (hour/ns) -38: Performance: 347.095 0.069 +38: Performance: 243.137 0.099 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47357,18 +47392,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.0 +38: Time: 0.005 0.003 197.1 38: (ns/day) (hour/ns) -38: Performance: 858.021 0.028 +38: Performance: 551.926 0.043 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (114 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (183 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp, line 42]: @@ -47437,9 +47472,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.0 +38: Time: 0.012 0.006 196.9 38: (ns/day) (hour/ns) -38: Performance: 361.983 0.066 +38: Performance: 233.612 0.103 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47461,18 +47496,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 31 % of the run time was spent in pair search, +38: NOTE: 13 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.6 +38: Time: 0.007 0.004 194.9 38: (ns/day) (hour/ns) -38: Performance: 653.783 0.037 +38: Performance: 419.288 0.057 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (113 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (200 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp, line 42]: @@ -47541,9 +47576,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 196.6 +38: Time: 0.011 0.006 195.5 38: (ns/day) (hour/ns) -38: Performance: 334.597 0.072 +38: Performance: 252.815 0.095 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47565,18 +47600,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.4 +38: Time: 0.007 0.003 197.1 38: (ns/day) (hour/ns) -38: Performance: 664.143 0.036 +38: Performance: 435.039 0.055 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (123 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (199 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp, line 42]: @@ -47644,13 +47679,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 35 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 197.9 +38: Time: 0.013 0.007 196.5 38: (ns/day) (hour/ns) -38: Performance: 209.188 0.115 +38: Performance: 221.008 0.109 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47672,18 +47704,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.6 +38: Time: 0.004 0.002 197.0 38: (ns/day) (hour/ns) -38: Performance: 810.178 0.030 +38: Performance: 683.675 0.035 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (122 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (219 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp, line 42]: @@ -47752,9 +47784,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.7 +38: Time: 0.014 0.007 194.7 38: (ns/day) (hour/ns) -38: Performance: 324.020 0.074 +38: Performance: 208.051 0.115 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47776,18 +47808,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.3 +38: Time: 0.004 0.002 196.5 38: (ns/day) (hour/ns) -38: Performance: 840.119 0.029 +38: Performance: 719.780 0.033 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (124 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (182 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp, line 42]: @@ -47856,9 +47888,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 196.6 +38: Time: 0.012 0.006 196.6 38: (ns/day) (hour/ns) -38: Performance: 337.308 0.071 +38: Performance: 245.247 0.098 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47880,18 +47912,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.3 +38: Time: 0.004 0.002 195.9 38: (ns/day) (hour/ns) -38: Performance: 858.141 0.028 +38: Performance: 694.230 0.035 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (120 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (163 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp, line 42]: @@ -47960,9 +47992,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.8 +38: Time: 0.012 0.006 196.4 38: (ns/day) (hour/ns) -38: Performance: 314.316 0.076 +38: Performance: 236.283 0.102 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -47984,18 +48016,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.4 +38: Time: 0.004 0.002 196.7 38: (ns/day) (hour/ns) -38: Performance: 868.668 0.028 +38: Performance: 823.389 0.029 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (120 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (164 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp, line 42]: @@ -48064,9 +48096,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.7 +38: Time: 0.012 0.006 196.4 38: (ns/day) (hour/ns) -38: Performance: 313.804 0.076 +38: Performance: 247.453 0.097 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48092,14 +48124,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.3 +38: Time: 0.004 0.002 196.4 38: (ns/day) (hour/ns) -38: Performance: 873.471 0.027 +38: Performance: 707.058 0.034 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (120 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (199 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp, line 42]: @@ -48168,9 +48200,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.8 +38: Time: 0.012 0.006 197.4 38: (ns/day) (hour/ns) -38: Performance: 318.278 0.075 +38: Performance: 250.522 0.096 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48192,18 +48224,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.3 +38: Time: 0.004 0.002 194.2 38: (ns/day) (hour/ns) -38: Performance: 872.605 0.028 +38: Performance: 697.689 0.034 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (120 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (167 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp, line 42]: @@ -48272,9 +48304,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.9 +38: Time: 0.012 0.006 195.2 38: (ns/day) (hour/ns) -38: Performance: 309.718 0.077 +38: Performance: 241.403 0.099 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48296,18 +48328,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 195.1 +38: Time: 0.004 0.002 196.8 38: (ns/day) (hour/ns) -38: Performance: 742.777 0.032 +38: Performance: 670.650 0.036 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (120 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (154 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp, line 42]: @@ -48376,9 +48408,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 196.7 +38: Time: 0.009 0.005 196.4 38: (ns/day) (hour/ns) -38: Performance: 327.326 0.073 +38: Performance: 314.573 0.076 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48400,18 +48432,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.2 +38: Time: 0.005 0.002 196.6 38: (ns/day) (hour/ns) -38: Performance: 873.843 0.027 +38: Performance: 607.554 0.040 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (120 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (160 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp, line 42]: @@ -48480,9 +48512,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 196.5 +38: Time: 0.012 0.006 195.7 38: (ns/day) (hour/ns) -38: Performance: 288.742 0.083 +38: Performance: 243.444 0.099 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48504,18 +48536,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 196.2 +38: Time: 0.005 0.002 196.8 38: (ns/day) (hour/ns) -38: Performance: 979.427 0.025 +38: Performance: 619.903 0.039 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (118 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (161 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp, line 42]: @@ -48584,9 +48616,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.4 +38: Time: 0.013 0.006 196.4 38: (ns/day) (hour/ns) -38: Performance: 310.639 0.077 +38: Performance: 228.466 0.105 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48608,18 +48640,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) 38: Time: 0.004 0.002 196.7 38: (ns/day) (hour/ns) -38: Performance: 740.545 0.032 +38: Performance: 648.415 0.037 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (134 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (179 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp, line 42]: @@ -48688,9 +48720,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 196.6 +38: Time: 0.011 0.006 195.0 38: (ns/day) (hour/ns) -38: Performance: 263.161 0.091 +38: Performance: 252.370 0.095 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48716,14 +48748,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.6 +38: Time: 0.004 0.002 197.0 38: (ns/day) (hour/ns) -38: Performance: 690.804 0.035 +38: Performance: 661.008 0.036 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (134 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (175 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp, line 42]: @@ -48790,7 +48822,7 @@ 38: Core t (s) Wall t (s) (%) 38: Time: 0.010 0.005 196.6 38: (ns/day) (hour/ns) -38: Performance: 293.753 0.082 +38: Performance: 301.222 0.080 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48817,14 +48849,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.7 +38: Time: 0.004 0.002 196.8 38: (ns/day) (hour/ns) -38: Performance: 663.714 0.036 +38: Performance: 659.381 0.036 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (152 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (214 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp, line 42]: @@ -48889,9 +48921,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 196.4 +38: Time: 0.011 0.005 192.4 38: (ns/day) (hour/ns) -38: Performance: 294.709 0.081 +38: Performance: 267.957 0.090 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -48914,18 +48946,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.9 +38: Time: 0.005 0.003 197.0 38: (ns/day) (hour/ns) -38: Performance: 742.777 0.032 +38: Performance: 545.185 0.044 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (146 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (228 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp, line 42]: @@ -48990,9 +49022,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 197.1 +38: Time: 0.011 0.006 196.6 38: (ns/day) (hour/ns) -38: Performance: 247.941 0.097 +38: Performance: 258.447 0.093 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49015,18 +49047,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 23 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.3 +38: Time: 0.004 0.002 195.8 38: (ns/day) (hour/ns) -38: Performance: 675.726 0.036 +38: Performance: 694.230 0.035 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (157 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (210 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp, line 42]: @@ -49090,13 +49122,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 13 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 197.4 +38: Time: 0.010 0.005 196.4 38: (ns/day) (hour/ns) -38: Performance: 307.645 0.078 +38: Performance: 289.230 0.083 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49119,18 +49148,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.9 +38: Time: 0.004 0.002 196.0 38: (ns/day) (hour/ns) -38: Performance: 821.522 0.029 +38: Performance: 663.500 0.036 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (150 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (172 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp, line 42]: @@ -49194,10 +49223,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 11 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.7 +38: Time: 0.012 0.006 195.5 38: (ns/day) (hour/ns) -38: Performance: 313.468 0.077 +38: Performance: 233.728 0.103 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49220,18 +49252,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 21 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.3 +38: Time: 0.004 0.002 196.5 38: (ns/day) (hour/ns) -38: Performance: 866.835 0.028 +38: Performance: 645.900 0.037 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (142 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (172 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp, line 42]: @@ -49296,9 +49328,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.3 +38: Time: 0.011 0.005 196.3 38: (ns/day) (hour/ns) -38: Performance: 313.022 0.077 +38: Performance: 272.448 0.088 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49325,14 +49357,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.0 +38: Time: 0.005 0.002 196.3 38: (ns/day) (hour/ns) -38: Performance: 784.589 0.031 +38: Performance: 638.933 0.038 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (139 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (172 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp, line 42]: @@ -49397,9 +49429,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 196.7 +38: Time: 0.011 0.005 193.7 38: (ns/day) (hour/ns) -38: Performance: 268.541 0.089 +38: Performance: 269.705 0.089 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49426,14 +49458,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.7 +38: Time: 0.004 0.002 195.8 38: (ns/day) (hour/ns) -38: Performance: 747.554 0.032 +38: Performance: 745.835 0.032 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (161 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (176 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp, line 42]: @@ -49498,9 +49530,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.8 +38: Time: 0.010 0.005 195.6 38: (ns/day) (hour/ns) -38: Performance: 366.375 0.066 +38: Performance: 277.542 0.086 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49523,18 +49555,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.0 +38: Time: 0.004 0.002 196.2 38: (ns/day) (hour/ns) -38: Performance: 813.387 0.030 +38: Performance: 756.458 0.032 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (142 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (189 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp, line 42]: @@ -49599,9 +49631,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 196.3 +38: Time: 0.011 0.006 194.7 38: (ns/day) (hour/ns) -38: Performance: 281.666 0.085 +38: Performance: 251.730 0.095 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49624,18 +49656,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.7 +38: Time: 0.005 0.003 196.8 38: (ns/day) (hour/ns) -38: Performance: 871.618 0.028 +38: Performance: 545.185 0.044 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (155 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (183 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp, line 42]: @@ -49700,9 +49732,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 196.8 +38: Time: 0.010 0.005 197.0 38: (ns/day) (hour/ns) -38: Performance: 292.651 0.082 +38: Performance: 276.062 0.087 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49725,18 +49757,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 197.1 +38: Time: 0.005 0.002 196.4 38: (ns/day) (hour/ns) -38: Performance: 737.531 0.033 +38: Performance: 632.180 0.038 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (146 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (184 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp, line 42]: @@ -49801,9 +49833,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 196.8 +38: Time: 0.012 0.006 196.7 38: (ns/day) (hour/ns) -38: Performance: 353.043 0.068 +38: Performance: 248.251 0.097 38: Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 38: log). 38: The current CPU can measure timings more accurately than the code in @@ -49826,24 +49858,24 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 197.0 +38: Time: 0.006 0.003 196.1 38: (ns/day) (hour/ns) -38: Performance: 830.605 0.029 +38: Performance: 521.996 0.046 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_rerun.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_normal.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (155 ms) -38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (4350 ms total) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (193 ms) +38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (5986 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 57 tests from 4 test cases ran. (7698 ms total) +38: [==========] 57 tests from 4 test cases ran. (11219 ms total) 38: [ PASSED ] 57 tests. -38/40 Test #38: MdrunNonIntegratorTests .......... Passed 7.76 sec +38/40 Test #38: MdrunNonIntegratorTests .......... Passed 11.30 sec test 39 Start 39: LegacyGroupSchemeMdrunTests @@ -49894,7 +49926,7 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (235 ms) +39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (335 ms) 39: [ RUN ] Simple/TpiTest.ReproducesOutput/1 39: 39: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Simple_TpiTest_ReproducesOutput_1_input.mdp]: @@ -49937,13 +49969,13 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (232 ms) -39: [----------] 2 tests from Simple/TpiTest (467 ms total) +39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (321 ms) +39: [----------] 2 tests from Simple/TpiTest (656 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 2 tests from 1 test case ran. (468 ms total) +39: [==========] 2 tests from 1 test case ran. (656 ms total) 39: [ PASSED ] 2 tests. -39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.49 sec +39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.68 sec test 40 Start 40: MdrunMpiTests @@ -49958,7 +49990,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -915707714 +40: Setting the LD random seed to -1136709269 40: Generated 3 of the 3 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 3 of the 3 1-4 parameter combinations @@ -49998,16 +50030,16 @@ 40: starting mdrun 'spc2' 40: 0 steps, 0.0 ps. 40: -40: NOTE: 42 % of the run time was spent in pair search, +40: NOTE: 40 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.000 176.4 +40: Time: 0.001 0.000 168.2 40: (ns/day) (hour/ns) -40: Performance: 225.366 0.106 +40: Performance: 251.833 0.095 40: This run will generate roughly 0 Mb of data -40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (56 ms) -40: [----------] 1 test from DomainDecompositionSpecialCasesTest (56 ms total) +40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (82 ms) +40: [----------] 1 test from DomainDecompositionSpecialCasesTest (82 ms total) 40: 40: [----------] 4 tests from MimicTest 40: [ RUN ] MimicTest.OneQuantumMol @@ -50023,7 +50055,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 990340505 +40: Setting the LD random seed to -472052852 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -50065,16 +50097,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 38 % of the run time was spent in pair search, +40: NOTE: 24 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.000 193.4 +40: Time: 0.001 0.001 191.8 40: (ns/day) (hour/ns) -40: Performance: 240.470 0.100 +40: Performance: 160.704 0.149 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.OneQuantumMol (55 ms) +40: [ OK ] MimicTest.OneQuantumMol (66 ms) 40: [ RUN ] MimicTest.AllQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -50088,7 +50120,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 476748349 +40: Setting the LD random seed to -1807122595 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -50130,16 +50162,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 47 % of the run time was spent in pair search, +40: NOTE: 36 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.001 194.5 +40: Time: 0.001 0.000 192.4 40: (ns/day) (hour/ns) -40: Performance: 169.737 0.141 +40: Performance: 205.319 0.117 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.AllQuantumMol (46 ms) +40: [ OK ] MimicTest.AllQuantumMol (58 ms) 40: [ RUN ] MimicTest.TwoQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -50153,7 +50185,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -1484326139 +40: Setting the LD random seed to -293344071 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -50195,13 +50227,13 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 36 % of the run time was spent in pair search, +40: NOTE: 35 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.000 193.4 +40: Time: 0.001 0.000 191.3 40: (ns/day) (hour/ns) -40: Performance: 190.230 0.126 +40: Performance: 214.812 0.112 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data 40: [ OK ] MimicTest.TwoQuantumMol (54 ms) @@ -50218,7 +50250,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 1055035834 +40: Setting the LD random seed to 154746220 40: Generated 2211 of the 2211 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 2211 of the 2211 1-4 parameter combinations @@ -50260,21 +50292,21 @@ 40: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 31 % of the run time was spent in pair search, +40: NOTE: 22 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.001 0.001 195.6 +40: Time: 0.001 0.001 194.8 40: (ns/day) (hour/ns) -40: Performance: 121.975 0.197 +40: Performance: 116.262 0.206 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 40: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 40: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 40: Note that mdrun will redetermine rlist based on the actual pair-list setup 40: This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.BondCuts (60 ms) -40: [----------] 4 tests from MimicTest (215 ms total) +40: [ OK ] MimicTest.BondCuts (81 ms) +40: [----------] 4 tests from MimicTest (259 ms total) 40: 40: [----------] 1 test from MultiSimTerminationTest 40: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -50290,7 +50322,7 @@ 40: scheme was introduced, but the group scheme was still the default. The 40: default is now the Verlet scheme, so you will observe different behaviour. 40: -40: Setting the LD random seed to 1741582148 +40: Setting the LD random seed to 815910405 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -50341,9 +50373,9 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.038 0.019 199.4 +40: Time: 0.040 0.020 199.3 40: (ns/day) (hour/ns) -40: Performance: 96.451 0.249 +40: Performance: 90.526 0.265 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 40: log). @@ -50368,9 +50400,9 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.028 0.014 199.3 +40: Time: 0.039 0.020 199.4 40: (ns/day) (hour/ns) -40: Performance: 129.884 0.185 +40: Performance: 92.040 0.261 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_128_FMA might be better (see 40: log). @@ -50395,11 +50427,11 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.028 0.014 199.3 +40: Time: 0.038 0.019 199.3 40: (ns/day) (hour/ns) -40: Performance: 130.418 0.184 +40: Performance: 94.821 0.253 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (255 ms) +40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (347 ms) 40: [ RUN ] PmeTest.ScalesTheBox 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -50413,7 +50445,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 281541042 +40: Setting the LD random seed to 509922396 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -50456,9 +50488,9 @@ 40: 0 steps, 0.0 ps. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.009 0.004 196.5 +40: Time: 0.008 0.004 194.8 40: (ns/day) (hour/ns) -40: Performance: 19.725 1.217 +40: Performance: 21.253 1.129 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.269 K 40: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -50467,8 +50499,8 @@ 40: Calculating fourier grid dimensions for X Y Z 40: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 40: This run will generate roughly 0 Mb of data -40: [ OK ] PmeTest.ScalesTheBox (462 ms) -40: [----------] 2 tests from PmeTest (717 ms total) +40: [ OK ] PmeTest.ScalesTheBox (582 ms) +40: [----------] 2 tests from PmeTest (929 ms total) 40: 40: [----------] 1 test from ReplicaExchangeTerminationTest 40: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -50536,7 +50568,7 @@ 40: Norm of force = 8.77219867200359e+01 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (176 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (233 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -50600,7 +50632,7 @@ 40: Norm of force = 1.84530029788203e+02 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (171 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (226 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -50662,7 +50694,7 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (76 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (100 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -50731,7 +50763,7 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (76 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (100 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -50803,7 +50835,7 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (13 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (20 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -50882,8 +50914,8 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (15 ms) -40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (527 ms total) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (21 ms) +40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (702 ms total) 40: 40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -50935,7 +50967,7 @@ 40: Norm of force = 1.63839399694378e+00 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (4 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (7 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -50988,7 +51020,7 @@ 40: Norm of force = 1.05251679559130e+00 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (5 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (7 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -51051,7 +51083,7 @@ 40: Norm of force = 1.05251679559130e+00 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (4 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (7 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -51112,7 +51144,7 @@ 40: Norm of force = 4.62274878672162e+03 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (77 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (103 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -51176,7 +51208,7 @@ 40: Norm of force = 3.61390332570589e+03 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (74 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (101 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -51250,30 +51282,30 @@ 40: Norm of force = 1.01988549359680e+04 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (75 ms) -40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (239 ms total) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (101 ms) +40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (327 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 21 tests from 7 test cases ran. (1754 ms total) +40: [==========] 21 tests from 7 test cases ran. (2299 ms total) 40: [ PASSED ] 21 tests. 40: 40: YOU HAVE 4 DISABLED TESTS 40: -40/40 Test #40: MdrunMpiTests .................... Passed 1.78 sec +40/40 Test #40: MdrunMpiTests .................... Passed 2.32 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: -GTest = 37.17 sec*proc (40 tests) -IntegrationTest = 12.02 sec*proc (5 tests) -MpiTest = 0.82 sec*proc (3 tests) -SlowTest = 19.43 sec*proc (1 test) -UnitTest = 5.72 sec*proc (34 tests) +GTest = 47.72 sec*proc (40 tests) +IntegrationTest = 17.09 sec*proc (5 tests) +MpiTest = 0.08 sec*proc (3 tests) +SlowTest = 24.43 sec*proc (1 test) +UnitTest = 6.20 sec*proc (34 tests) -Total Test time (real) = 37.24 sec +Total Test time (real) = 48.01 sec touch build-basic dh_testdir -/usr/bin/make -j16 -C build/mpich +/usr/bin/make -j15 -C build/mpich make[1]: Entering directory '/build/gromacs-2019.1/build/mpich' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/mpich/CMakeFiles /build/gromacs-2019.1/build/mpich/CMakeFiles/progress.marks @@ -51289,11 +51321,9 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/programs /build/gromacs-2019.1/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/programs /build/gromacs-2019.1/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build @@ -51306,47 +51336,49 @@ cd /build/gromacs-2019.1/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp Scanning dependencies of target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -Scanning dependencies of target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c -Scanning dependencies of target libgromacs_generated -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c +Scanning dependencies of target libgromacs_generated +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp @@ -51354,9 +51386,9 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 1%] Built target mdrun_objlib +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp @@ -51385,6 +51417,8 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 2%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp @@ -51396,12 +51430,12 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp -[ 2%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp @@ -51411,8 +51445,6 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp @@ -51431,12 +51463,6 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -51449,6 +51475,12 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp @@ -51466,12 +51498,12 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp +[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp @@ -52189,7 +52221,7 @@ make[2]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/mpich/CMakeFiles 0 make[1]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -j16 -C build/mpich-dp +/usr/bin/make -j15 -C build/mpich-dp make[1]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/mpich-dp/CMakeFiles /build/gromacs-2019.1/build/mpich-dp/CMakeFiles/progress.marks @@ -52201,71 +52233,73 @@ /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/programs /build/gromacs-2019.1/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/programs /build/gromacs-2019.1/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Scanning dependencies of target lmfit_objlib +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp -Scanning dependencies of target mdrun_objlib +Scanning dependencies of target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp -Scanning dependencies of target libgromacs_external +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp +[ 1%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp @@ -52273,8 +52307,6 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 1%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp @@ -52299,7 +52331,9 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp +[ 2%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp @@ -52316,10 +52350,10 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 2%] Built target lmfit_objlib +[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp @@ -52329,9 +52363,7 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp -[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp @@ -52353,10 +52385,6 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -52369,6 +52397,10 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp @@ -52383,6 +52415,8 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp @@ -52393,8 +52427,6 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp @@ -53108,7 +53140,7 @@ sed -e 's/#MPIABBR#/mpich/g' -e 's/#MPIPROG#/MPICH/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-mpich.README.Debian -/usr/bin/make -j16 -C build/mpich tests +/usr/bin/make -j15 -C build/mpich tests make[1]: Entering directory '/build/gromacs-2019.1/build/mpich' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -53122,56 +53154,56 @@ /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/external/googletest /build/gromacs-2019.1/build/mpich/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' Scanning dependencies of target mdrunutility-test-shared -[ 1%] Built target lmfit_objlib Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -Scanning dependencies of target gmock /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +[ 1%] Built target lmfit_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -[ 2%] Built target libgromacs_external make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +[ 2%] Built target libgromacs_external +[ 3%] Built target tng_io_obj +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +Scanning dependencies of target gmock +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc -[ 3%] Built target tng_io_obj make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' @@ -53188,9 +53220,9 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 81%] Built target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 81%] Built target mdrunutility-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 81%] Built target onlinehelp-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 81%] Built target mdrunutility-test-shared cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o @@ -53232,147 +53264,151 @@ [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/testutils/tests /build/gromacs-2019.1/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/testutils/tests /build/gromacs-2019.1/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/testutils/tests /build/gromacs-2019.1/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target compat-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +Scanning dependencies of target testutils-mpi-test +/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build +Scanning dependencies of target testutils-test make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +Scanning dependencies of target applied-forces-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target domdec-test -Scanning dependencies of target hardware-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -Scanning dependencies of target compat-test +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build Scanning dependencies of target fft-test -Scanning dependencies of target gpu_utils-test +Scanning dependencies of target hardware-test /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -Scanning dependencies of target listed-forces-test -Scanning dependencies of target applied-forces-test -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build -Scanning dependencies of target mdrunutility-test +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +Scanning dependencies of target listed-forces-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp +Scanning dependencies of target commandline-test +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp -Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp -Scanning dependencies of target testutils-mpi-test +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -Scanning dependencies of target onlinehelp-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build -Scanning dependencies of target mdlib-test -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build +Scanning dependencies of target gpu_utils-test make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build Scanning dependencies of target math-test make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -Scanning dependencies of target commandline-test Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build -Scanning dependencies of target mdrunutility-mpi-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 84%] Built target compat-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 +Scanning dependencies of target onlinehelp-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 83%] Built target testutils-mpi-test +[ 84%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -53381,22 +53417,23 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 84%] Built target compat-test +[ 84%] Built target applied-forces-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -53405,10 +53442,9 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -[ 85%] Built target hardware-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 84%] Built target fft-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -53417,47 +53453,41 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 85%] Built target applied-forces-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend +[ 85%] Built target mdrunutility-test make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= -Scanning dependencies of target table-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -[ 85%] Built target fft-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +Scanning dependencies of target table-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 85%] Built target mdrunutility-test +[ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -[ 85%] Built target listed-forces-test make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 85%] Built target domdec-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= @@ -53466,8 +53496,22 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 85%] Built target domdec-test +[ 85%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -53476,9 +53520,10 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -[ 85%] Built target mdrunutility-mpi-test +[ 86%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -53487,18 +53532,8 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 85%] Built target restraintpotential-test +[ 86%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -53507,156 +53542,153 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 85%] Built target onlinehelp-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +[ 86%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 Scanning dependencies of target simd-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 86%] Built target utility-mpi-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 87%] Built target pull-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 88%] Built target taskassignment-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +[ 87%] Built target taskassignment-test cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 89%] Built target fileio-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +[ 88%] Built target pull-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 90%] Built target testutils-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 89%] Built target testutils-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 90%] Built target gpu_utils-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +[ 89%] Built target gpu_utils-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -[ 90%] Built target awh-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp -[ 90%] Built target table-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +[ 89%] Built target table-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich 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/usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o 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/build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 90%] Built target fileio-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 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CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 91%] Built target commandline-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp +[ 90%] Built target awh-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 92%] Built target mdlib-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 91%] Built target mdlib-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 93%] Built target random-test +[ 92%] Built target random-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 93%] Built target commandline-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 94%] Built target ewald-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp -[ 93%] Built target math-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp -[ 94%] Built target ewald-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 96%] Built target simd-test +[ 94%] Built target math-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 97%] Built target options-test +[ 95%] Built target options-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 97%] Built target simd-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' @@ -53719,13 +53751,13 @@ 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData -1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSimpleData (3 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData -1: [ OK ] ReferenceDataTest.HandlesStringBlockData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData @@ -53741,9 +53773,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree @@ -53753,9 +53785,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -53767,26 +53799,26 @@ 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (2 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (6 ms total) +1: [----------] 34 tests from ReferenceDataTest (11 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -53814,23 +53846,23 @@ 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) -1: [----------] 4 tests from FloatingPointToleranceTest (1 ms total) +1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (0 ms) +1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (11 ms total) +1: [==========] 59 tests from 5 test cases ran. (16 ms total) 1: [ PASSED ] 59 tests. - 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.10 sec + 1/27 Test #1: TestUtilsUnitTests ............... Passed 1.51 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -53840,13 +53872,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (2 ms) -2: [----------] 1 test from MpiSelfTest (3 ms total) +2: [ OK ] MpiSelfTest.Runs (23 ms) +2: [----------] 1 test from MpiSelfTest (23 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (3 ms total) +2: [==========] 1 test from 1 test case ran. (23 ms total) 2: [ PASSED ] 1 test. - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.14 sec + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 1.28 sec test 3 Start 3: MdlibUnitTest @@ -53861,12 +53893,12 @@ 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) +3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) -3: [----------] 3 tests from PrintEbin (0 ms total) +3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) +3: [----------] 3 tests from PrintEbin (2 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond @@ -53924,8 +53956,8 @@ 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs -3: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -3: [----------] 1 test from UpdateGroupsCog (1 ms total) +3: [ OK ] UpdateGroupsCog.ComputesCogs (6 ms) +3: [----------] 1 test from UpdateGroupsCog (7 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -53979,9 +54011,9 @@ 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (3 ms total) +3: [==========] 50 tests from 8 test cases ran. (10 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.09 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 0.30 sec test 4 Start 4: AppliedForcesUnitTest @@ -53991,7 +54023,7 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static -4: [ OK ] ElectricFieldTest.Static (0 ms) +4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed @@ -54001,7 +54033,7 @@ 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.08 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.50 sec test 5 Start 5: ListedForcesTest @@ -54011,7 +54043,7 @@ 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone -5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) +5: [ OK ] BondedTest.BondAnglePbcNone (1 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz @@ -54029,7 +54061,7 @@ 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo -5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) +5: [ OK ] BondedTest.IfuncAnglesPbcNo (7 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ @@ -54037,15 +54069,15 @@ 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy -5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) +5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (7 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) -5: [----------] 15 tests from BondedTest (0 ms total) +5: [----------] 15 tests from BondedTest (17 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 15 tests from 1 test case ran. (0 ms total) +5: [==========] 15 tests from 1 test case ran. (17 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.08 sec + 5/27 Test #5: ListedForcesTest ................. Passed 0.24 sec test 6 Start 6: CommandLineUnitTests @@ -54055,18 +54087,18 @@ 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (122 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) -6: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) +6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) +6: [----------] 3 tests from CommandLineHelpModuleTest (124 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions @@ -54075,7 +54107,7 @@ 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (4 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -54090,7 +54122,7 @@ 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -54100,7 +54132,7 @@ 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument -6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) +6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString @@ -54108,7 +54140,7 @@ 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix -6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (1 ms) +6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown @@ -54134,7 +54166,7 @@ 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) +6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 6: 6: [----------] 21 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs @@ -54158,7 +54190,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults -6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension @@ -54170,21 +54202,21 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) +6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -6: [----------] 21 tests from ParseCommonArgsTest (2 ms total) +6: [----------] 21 tests from ParseCommonArgsTest (3 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (8 ms total) +6: [==========] 55 tests from 6 test cases ran. (132 ms total) 6: [ PASSED ] 55 tests. - 6/27 Test #6: CommandLineUnitTests ............. Passed 0.09 sec + 6/27 Test #6: CommandLineUnitTests ............. Passed 0.83 sec test 7 Start 7: DomDecTests @@ -54217,9 +54249,9 @@ 7: [----------] 2 tests from LocalAtomSetManager (0 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 9 tests from 2 test cases ran. (0 ms total) +7: [==========] 9 tests from 2 test cases ran. (1 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.10 sec + 7/27 Test #7: DomDecTests ...................... Passed 0.61 sec test 8 Start 8: EwaldUnitTests @@ -54235,61 +54267,61 @@ 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (3 ms total) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (23 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (354 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (16 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (10 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (439 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (17 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (14 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (58 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (13 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (973 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -54305,65 +54337,65 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (16 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 @@ -54373,7 +54405,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 @@ -54381,19 +54413,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (2 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 @@ -54401,7 +54433,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 @@ -54417,43 +54449,43 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (13 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 @@ -54463,63 +54495,63 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (2 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (6 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 @@ -54531,7 +54563,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (17 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 @@ -54539,19 +54571,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 @@ -54561,220 +54593,220 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (13 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (8 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (40 ms total) +8: [----------] 144 tests from SaneInput/PmeGatherTest (155 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (5 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (7 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (6 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (5 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (6 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (15 ms total) +8: [----------] 16 tests from SaneInput/PmeSolveTest (44 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (5 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (6 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (4 ms total) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (6 ms) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (22 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (6 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (6 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (6 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (8 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (26 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (5 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (6 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (6 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (6 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (6 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (5 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (14 ms total) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (46 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (6 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (6 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (10 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (14 ms total) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (51 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (11 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (7 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (8 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (8 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (8 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (18 ms total) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (68 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (225 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (348 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (13 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (46 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (13 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (646 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (314 ms total) +8: [==========] 257 tests from 10 test cases ran. (2169 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 0.44 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 2.39 sec test 9 Start 9: FFTUnitTests @@ -54784,32 +54816,32 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (23 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (12 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (42 ms) -9: [----------] 2 tests from ManyFFTTest (67 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (40 ms) +9: [----------] 2 tests from ManyFFTTest (53 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (9 ms) -9: [----------] 1 test from FFTTest (10 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (10 ms) +9: [----------] 1 test from FFTTest (11 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (3 ms) +9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) 9: [----------] 1 test from FFFTest3D (3 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (3 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (6 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (7 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (9 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 @@ -54817,15 +54849,15 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (19 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (23 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (26 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (62 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (31 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (79 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (142 ms total) +9: [==========] 14 tests from 4 test cases ran. (146 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.23 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 0.44 sec test 10 Start 10: GpuUtilsUnitTests @@ -54868,7 +54900,7 @@ 10: [ OK ] HostAllocatorTestCopyable/0.TransfersWithoutPinningWork (0 ms) 10: [ RUN ] HostAllocatorTestCopyable/0.FillInputAlsoWorksAfterCallingReserve 10: [ OK ] HostAllocatorTestCopyable/0.FillInputAlsoWorksAfterCallingReserve (0 ms) -10: [----------] 3 tests from HostAllocatorTestCopyable/0 (4 ms total) +10: [----------] 3 tests from HostAllocatorTestCopyable/0 (0 ms total) 10: 10: [----------] 3 tests from HostAllocatorTestCopyable/1, where TypeParam = float 10: [ RUN ] HostAllocatorTestCopyable/1.VectorsWithDefaultHostAllocatorAlwaysWorks @@ -54890,7 +54922,7 @@ 10: 10: [----------] 5 tests from HostAllocatorTestNoMem/0, where TypeParam = int 10: [ RUN ] HostAllocatorTestNoMem/0.CreateVector -10: [ OK ] HostAllocatorTestNoMem/0.CreateVector (1 ms) +10: [ OK ] HostAllocatorTestNoMem/0.CreateVector (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/0.MoveAssignment 10: [ OK ] HostAllocatorTestNoMem/0.MoveAssignment (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/0.MoveConstruction @@ -54899,7 +54931,7 @@ 10: [ OK ] HostAllocatorTestNoMem/0.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/0.Comparison 10: [ OK ] HostAllocatorTestNoMem/0.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/0 (1 ms total) +10: [----------] 5 tests from HostAllocatorTestNoMem/0 (0 ms total) 10: 10: [----------] 5 tests from HostAllocatorTestNoMem/1, where TypeParam = float 10: [ RUN ] HostAllocatorTestNoMem/1.CreateVector @@ -54951,8 +54983,8 @@ 10: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyAssignment 10: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyAssignment (0 ms) 10: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyConstruction -10: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyConstruction (0 ms) -10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (0 ms total) +10: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyConstruction (1 ms) +10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (1 ms total) 10: 10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/2, where TypeParam = gmx::BasicVector 10: [ RUN ] HostAllocatorTestNoMemCopyable/2.CopyAssignment @@ -54994,26 +55026,26 @@ 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (1 ms total) +10: [----------] 4 tests from AllocatorTest/2 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment -10: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (8 ms) 10: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/3.Move 10: [ OK ] AllocatorTest/3.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/3 (0 ms total) +10: [----------] 4 tests from AllocatorTest/3 (9 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 60 tests from 19 test cases ran. (6 ms total) +10: [==========] 60 tests from 19 test cases ran. (10 ms total) 10: [ PASSED ] 60 tests. -10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.12 sec +10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.15 sec test 11 Start 11: HardwareUnitTests @@ -55023,19 +55055,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (96 ms) +11: [ OK ] HardwareTopologyTest.Execute (557 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (88 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (65 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (90 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (43 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (79 ms) -11: [----------] 4 tests from HardwareTopologyTest (353 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (45 ms) +11: [----------] 4 tests from HardwareTopologyTest (710 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (353 ms total) +11: [==========] 4 tests from 1 test case ran. (711 ms total) 11: [ PASSED ] 4 tests. -11/27 Test #11: HardwareUnitTests ................ Passed 0.48 sec +11/27 Test #11: HardwareUnitTests ................ Passed 1.00 sec test 12 Start 12: MathUnitTests @@ -55095,7 +55127,7 @@ 12: [ RUN ] FunctionTest.Log2I32Bit 12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit -12: [ OK ] FunctionTest.Log2I64Bit (0 ms) +12: [ OK ] FunctionTest.Log2I64Bit (2 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor 12: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 12: [ RUN ] FunctionTest.InvsqrtFloat @@ -55103,7 +55135,7 @@ 12: [ RUN ] FunctionTest.InvsqrtDouble 12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger -12: [ OK ] FunctionTest.InvsqrtInteger (0 ms) +12: [ OK ] FunctionTest.InvsqrtInteger (1 ms) 12: [ RUN ] FunctionTest.InvcbrtFloat 12: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvcbrtDouble @@ -55115,7 +55147,7 @@ 12: [ RUN ] FunctionTest.SixthrootDouble 12: [ OK ] FunctionTest.SixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.SixthrootInteger -12: [ OK ] FunctionTest.SixthrootInteger (0 ms) +12: [ OK ] FunctionTest.SixthrootInteger (1 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat 12: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootDouble @@ -55129,10 +55161,10 @@ 12: [ RUN ] FunctionTest.ErfInvDouble 12: [ OK ] FunctionTest.ErfInvDouble (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -12: [----------] 21 tests from FunctionTest (2 ms total) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) +12: [----------] 21 tests from FunctionTest (6 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -55179,7 +55211,7 @@ 12: [ OK ] PaddedVectorTest/2.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/2.CanSwap 12: [ OK ] PaddedVectorTest/2.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/2 (5 ms total) +12: [----------] 4 tests from PaddedVectorTest/2 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/3, where TypeParam = std::allocator > 12: [ RUN ] PaddedVectorTest/3.ConstructsResizesAndReserves @@ -55201,7 +55233,7 @@ 12: [ OK ] PaddedVectorTest/4.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/4.CanSwap 12: [ OK ] PaddedVectorTest/4.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/4 (0 ms total) +12: [----------] 4 tests from PaddedVectorTest/4 (1 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/5, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/5.ConstructsResizesAndReserves @@ -55325,12 +55357,12 @@ 12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (0 ms total) +12: [----------] 33 tests from RVecTest (1 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (9 ms total) +12: [==========] 112 tests from 20 test cases ran. (8 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.12 sec +12/27 Test #12: MathUnitTests .................... Passed 0.06 sec test 13 Start 13: MdrunUtilityUnitTests @@ -55350,7 +55382,7 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -55358,16 +55390,16 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 13: NOTE: Affinity setting failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (12 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads @@ -55375,12 +55407,12 @@ 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -13: [----------] 17 tests from ThreadAffinityTest (15 ms total) +13: [----------] 17 tests from ThreadAffinityTest (6 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (15 ms total) +13: [==========] 17 tests from 1 test case ran. (6 ms total) 13: [ PASSED ] 17 tests. -13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.10 sec +13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.05 sec test 14 Start 14: MdrunUtilityMpiUnitTests @@ -55390,9 +55422,9 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (15 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (56 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled @@ -55401,29 +55433,29 @@ 14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (16 ms total) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (59 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (3 ms total) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (5 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (20 ms total) +14: [==========] 13 tests from 2 test cases ran. (64 ms total) 14: [ PASSED ] 13 tests. -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.20 sec +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.18 sec test 15 Start 15: OnlineHelpUnitTests @@ -55444,27 +55476,27 @@ 15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -15: [----------] 6 tests from TextTableFormatterTest (1 ms total) +15: [----------] 6 tests from TextTableFormatterTest (0 ms total) 15: 15: [----------] 3 tests from HelpManagerTest 15: [ RUN ] HelpManagerTest.HandlesRootTopic -15: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) +15: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms) 15: [ RUN ] HelpManagerTest.HandlesSubTopics 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics 15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -15: [----------] 3 tests from HelpManagerTest (0 ms total) +15: [----------] 3 tests from HelpManagerTest (1 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 15: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) -15: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) +15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) +15: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) 15: 15: [----------] 11 tests from HelpWriterContextTest 15: [ RUN ] HelpWriterContextTest.FormatsParagraphs -15: [ OK ] HelpWriterContextTest.FormatsParagraphs (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 15: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 15: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace @@ -55476,7 +55508,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList -15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsBulletList (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable @@ -55488,9 +55520,9 @@ 15: [----------] 11 tests from HelpWriterContextTest (1 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (2 ms total) +15: [==========] 22 tests from 4 test cases ran. (3 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.08 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.05 sec test 16 Start 16: OptionsUnitTests @@ -55506,7 +55538,7 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 16: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) @@ -55561,12 +55593,12 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage 16: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) -16: [----------] 1 test from OptionsTest (0 ms total) +16: [----------] 1 test from OptionsTest (1 ms total) 16: 16: [----------] 9 tests from OptionsAssignerTest 16: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter @@ -55598,7 +55630,7 @@ 16: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 16: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 16: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) -16: [----------] 4 tests from OptionsAssignerBooleanTest (1 ms total) +16: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 16: 16: [----------] 13 tests from OptionsAssignerIntegerTest 16: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue @@ -55606,7 +55638,7 @@ 16: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 16: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue -16: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) +16: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (1 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 16: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue @@ -55627,7 +55659,7 @@ 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -55669,14 +55701,14 @@ 16: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 16: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange -16: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) +16: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (1 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) -16: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) +16: [----------] 6 tests from OptionsAssignerEnumTest (1 ms total) 16: 16: [----------] 8 tests from RepeatingOptionSectionTest 16: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance @@ -55718,7 +55750,7 @@ 16: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 16: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) -16: [----------] 2 tests from TreeValueSupportAssignTest (1 ms total) +16: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 16: 16: [----------] 1 test from TreeValueSupportAssignErrorTest 16: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue @@ -55740,7 +55772,7 @@ 16: 16: [----------] 6 tests from TreeValueSupportAdjustTest 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues @@ -55751,15 +55783,15 @@ 16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -16: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) +16: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption -16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option -16: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsStringOption 16: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsFloatOption @@ -55769,11 +55801,11 @@ 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption -16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -16: [----------] 8 tests from TreeValueSupportTest (1 ms total) +16: [ OK ] TreeValueSupportTest.SupportsEnumOption (1 ms) +16: [----------] 8 tests from TreeValueSupportTest (2 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (4 ms total) +16: [==========] 110 tests from 18 test cases ran. (8 ms total) 16: [ PASSED ] 110 tests. 16/27 Test #16: OptionsUnitTests ................. Passed 0.07 sec test 17 @@ -55785,7 +55817,7 @@ 17: [----------] Global test environment set-up. 17: [----------] 4 tests from ExponentialDistributionTest 17: [ RUN ] ExponentialDistributionTest.Output -17: [ OK ] ExponentialDistributionTest.Output (1 ms) +17: [ OK ] ExponentialDistributionTest.Output (0 ms) 17: [ RUN ] ExponentialDistributionTest.Logical 17: [ OK ] ExponentialDistributionTest.Logical (0 ms) 17: [ RUN ] ExponentialDistributionTest.Reset @@ -55827,19 +55859,19 @@ 17: [ RUN ] TabulatedNormalDistributionTest.Output16 17: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 -17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) +17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (1 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Logical 17: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Reset 17: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.AltParam 17: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -17: [----------] 6 tests from TabulatedNormalDistributionTest (5 ms total) +17: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical @@ -55854,7 +55886,7 @@ 17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output @@ -55878,7 +55910,7 @@ 17: [ OK ] UniformRealDistributionTest.Reset (0 ms) 17: [ RUN ] UniformRealDistributionTest.AltParam 17: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -17: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +17: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -55902,9 +55934,9 @@ 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (9 ms total) +17: [==========] 44 tests from 10 test cases ran. (6 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.11 sec +17/27 Test #17: RandomUnitTests .................. Passed 0.08 sec test 18 Start 18: RestraintTests @@ -55918,9 +55950,9 @@ 18: [----------] 1 test from RestraintManager (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 1 test from 1 test case ran. (0 ms total) +18: [==========] 1 test from 1 test case ran. (1 ms total) 18: [ PASSED ] 1 test. -18/27 Test #18: RestraintTests ................... Passed 0.13 sec +18/27 Test #18: RestraintTests ................... Passed 0.12 sec test 19 Start 19: TableUnitTests @@ -55930,54 +55962,54 @@ 19: [----------] Global test environment set-up. 19: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) 19: [ RUN ] SplineTableTest/0.Sinc -19: [ OK ] SplineTableTest/0.Sinc (0 ms) +19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (28 ms) +19: [ OK ] SplineTableTest/0.LJ12 (37 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection 19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (70 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (59 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (76 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (109 ms) 19: [ RUN ] SplineTableTest/0.Simd -19: [ OK ] SplineTableTest/0.Simd (14 ms) +19: [ OK ] SplineTableTest/0.Simd (26 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (65 ms) -19: [----------] 10 tests from SplineTableTest/0 (259 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (109 ms) +19: [----------] 10 tests from SplineTableTest/0 (348 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (3 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (2 ms) 19: [ RUN ] SplineTableTest/1.Sinc 19: [ OK ] SplineTableTest/1.Sinc (0 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (5 ms) +19: [ OK ] SplineTableTest/1.LJ12 (8 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection -19: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) +19: [ OK ] SplineTableTest/1.PmeCorrection (6 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (12 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (16 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (11 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (16 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (4 ms) +19: [ OK ] SplineTableTest/1.Simd (6 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (9 ms) -19: [----------] 10 tests from SplineTableTest/1 (49 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (16 ms) +19: [----------] 10 tests from SplineTableTest/1 (72 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (308 ms total) +19: [==========] 20 tests from 2 test cases ran. (420 ms total) 19: [ PASSED ] 20 tests. -19/27 Test #19: TableUnitTests ................... Passed 0.42 sec +19/27 Test #19: TableUnitTests ................... Passed 0.56 sec test 20 Start 20: TaskAssignmentUnitTests @@ -55997,7 +56029,7 @@ 20: [----------] Global test environment tear-down 20: [==========] 3 tests from 1 test case ran. (1 ms total) 20: [ PASSED ] 3 tests. -20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.12 sec +20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.35 sec test 21 Start 21: UtilityUnitTests @@ -56022,14 +56054,14 @@ 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.Move 21: [ OK ] AllocatorTest/1.Move (0 ms) 21: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/1 (0 ms total) +21: [----------] 5 tests from AllocatorTest/1 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -56061,14 +56093,14 @@ 21: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.Move 21: [ OK ] AllocatorTest/4.Move (0 ms) 21: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/4 (1 ms total) +21: [----------] 5 tests from AllocatorTest/4 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment @@ -56117,7 +56149,7 @@ 21: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/0 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/0 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks @@ -56222,7 +56254,7 @@ 21: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/5 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks @@ -56306,7 +56338,7 @@ 21: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/9 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/9 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks @@ -56432,7 +56464,7 @@ 21: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/15 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks @@ -56520,18 +56552,18 @@ 21: 21: [----------] 4 tests from KeyValueTreeSerializerTest 21: [ RUN ] KeyValueTreeSerializerTest.EmptyTree -21: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms) 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -21: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +21: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest 21: [ RUN ] TreeValueTransformTest.SimpleTransforms -21: [ OK ] TreeValueTransformTest.SimpleTransforms (1 ms) +21: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 21: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 21: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 21: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject @@ -56542,19 +56574,19 @@ 21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -21: [----------] 6 tests from TreeValueTransformTest (1 ms total) +21: [----------] 6 tests from TreeValueTransformTest (0 ms total) 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError -21: [ OK ] TreeValueTransformErrorTest.ConversionError (2 ms) -21: [----------] 1 test from TreeValueTransformErrorTest (2 ms total) +21: [ OK ] TreeValueTransformErrorTest.ConversionError (1 ms) +21: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported 21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) -21: [----------] 2 tests from RegexBasicTest (1 ms total) +21: [----------] 2 tests from RegexBasicTest (0 ms total) 21: 21: [----------] 5 tests from LoggerTest 21: [ RUN ] LoggerTest.EmptyLoggerWorks @@ -56578,16 +56610,16 @@ 21: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 21: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 21: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) -21: [----------] 4 tests from MutexBasicTest (1 ms total) +21: [----------] 4 tests from MutexBasicTest (0 ms total) 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (16 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (16 ms total) +21: [----------] 3 tests from MutexTaskTest (1 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -56617,19 +56649,19 @@ 21: [ RUN ] StringUtilityTest.StripString 21: [ OK ] StringUtilityTest.StripString (0 ms) 21: [ RUN ] StringUtilityTest.SplitString -21: [ OK ] StringUtilityTest.SplitString (1 ms) +21: [ OK ] StringUtilityTest.SplitString (0 ms) 21: [ RUN ] StringUtilityTest.SplitDelimitedString 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) -21: [----------] 7 tests from StringUtilityTest (1 ms total) +21: [----------] 7 tests from StringUtilityTest (0 ms total) 21: 21: [----------] 2 tests from FormatStringTest 21: [ RUN ] FormatStringTest.HandlesBasicFormatting 21: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 21: [ RUN ] FormatStringTest.HandlesLongStrings 21: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) -21: [----------] 2 tests from FormatStringTest (0 ms total) +21: [----------] 2 tests from FormatStringTest (1 ms total) 21: 21: [----------] 1 test from StringFormatterTest 21: [ RUN ] StringFormatterTest.HandlesBasicFormatting @@ -56682,7 +56714,7 @@ 21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -21: [----------] 10 tests from TextLineWrapperTest (1 ms total) +21: [----------] 10 tests from TextLineWrapperTest (0 ms total) 21: 21: [----------] 6 tests from TextWriterTest 21: [ RUN ] TextWriterTest.WritesLines @@ -56697,7 +56729,7 @@ 21: [ OK ] TextWriterTest.TracksNewlines (0 ms) 21: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 21: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -21: [----------] 6 tests from TextWriterTest (0 ms total) +21: [----------] 6 tests from TextWriterTest (1 ms total) 21: 21: [----------] 1 test from TypeTraitsTest 21: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -56775,15 +56807,15 @@ 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (1 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 @@ -56792,7 +56824,7 @@ 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (3 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -56802,19 +56834,19 @@ 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (1 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) -21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) +21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (30 ms total) +21: [==========] 325 tests from 52 test cases ran. (9 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.16 sec +21/27 Test #21: UtilityUnitTests ................. Passed 0.07 sec test 22 Start 22: UtilityMpiUnitTests @@ -56824,15 +56856,15 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (7 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (185 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier 22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (7 ms total) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (185 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (7 ms total) +22: [==========] 2 tests from 1 test case ran. (185 ms total) 22: [ PASSED ] 2 tests. -22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.24 sec +22/27 Test #22: UtilityMpiUnitTests .............. Passed 1.71 sec test 23 Start 23: FileIOTests @@ -56842,10 +56874,10 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from FileMD5Test 23: [ RUN ] FileMD5Test.CanComputeMD5 -23: [ OK ] FileMD5Test.CanComputeMD5 (5 ms) +23: [ OK ] FileMD5Test.CanComputeMD5 (10 ms) 23: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -23: [----------] 2 tests from FileMD5Test (6 ms total) +23: [----------] 2 tests from FileMD5Test (10 ms total) 23: 23: [----------] 9 tests from ReadTest 23: [ RUN ] ReadTest.get_eint_ReadsInteger @@ -56896,7 +56928,7 @@ 23: 23: 23: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -23: [----------] 9 tests from ReadTest (0 ms total) +23: [----------] 9 tests from ReadTest (1 ms total) 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile @@ -56909,17 +56941,17 @@ 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (6 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (46 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (8 ms total) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (47 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (14 ms total) +23: [==========] 17 tests from 4 test cases ran. (58 ms total) 23: [ PASSED ] 17 tests. -23/27 Test #23: FileIOTests ...................... Passed 0.13 sec +23/27 Test #23: FileIOTests ...................... Passed 0.16 sec test 24 Start 24: PullTest @@ -56943,7 +56975,7 @@ 24: [----------] Global test environment tear-down 24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. -24/27 Test #24: PullTest ......................... Passed 0.10 sec +24/27 Test #24: PullTest ......................... Passed 0.13 sec test 25 Start 25: AwhTest @@ -56953,32 +56985,32 @@ 25: [----------] Global test environment set-up. 25: [----------] 1 test from BiasTest 25: [ RUN ] BiasTest.DetectsCovering -25: [ OK ] BiasTest.DetectsCovering (1 ms) -25: [----------] 1 test from BiasTest (1 ms total) +25: [ OK ] BiasTest.DetectsCovering (0 ms) +25: [----------] 1 test from BiasTest (0 ms total) 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (1 ms) -25: [----------] 1 test from gridTest (1 ms total) +25: [ OK ] gridTest.neighborhood (2 ms) +25: [----------] 1 test from gridTest (2 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (17 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (4 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (4 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) -25: [----------] 8 tests from WithParameters/BiasTest (5 ms total) +25: [----------] 8 tests from WithParameters/BiasTest (27 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -56988,9 +57020,9 @@ 25: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (7 ms total) +25: [==========] 12 tests from 4 test cases ran. (29 ms total) 25: [ PASSED ] 12 tests. -25/27 Test #25: AwhTest .......................... Passed 0.14 sec +25/27 Test #25: AwhTest .......................... Passed 0.16 sec test 26 Start 26: SimdUnitTests @@ -57017,7 +57049,7 @@ 26: [ OK ] SimdBootstrapTest.simd4LoadU (0 ms) 26: [ RUN ] SimdBootstrapTest.simd4StoreU 26: [ OK ] SimdBootstrapTest.simd4StoreU (0 ms) -26: [----------] 9 tests from SimdBootstrapTest (0 ms total) +26: [----------] 9 tests from SimdBootstrapTest (1 ms total) 26: 26: [----------] 1 test from SimdTest 26: [ RUN ] SimdTest.GmxAligned @@ -57109,7 +57141,7 @@ 26: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 26: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 26: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -26: [----------] 42 tests from SimdFloatingpointTest (1 ms total) +26: [----------] 42 tests from SimdFloatingpointTest (0 ms total) 26: 26: [----------] 16 tests from SimdFloatingpointUtilTest 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -57159,27 +57191,27 @@ 26: [ RUN ] SimdMathTest.copysign 26: [ OK ] SimdMathTest.copysign (0 ms) 26: [ RUN ] SimdMathTest.invsqrt -26: [ OK ] SimdMathTest.invsqrt (0 ms) +26: [ OK ] SimdMathTest.invsqrt (1 ms) 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair -26: [ OK ] SimdMathTest.invsqrtPair (1 ms) +26: [ OK ] SimdMathTest.invsqrtPair (0 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (0 ms) +26: [ OK ] SimdMathTest.sqrt (1 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe 26: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (1 ms) +26: [ OK ] SimdMathTest.inv (17 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (1 ms) +26: [ OK ] SimdMathTest.log (0 ms) 26: [ RUN ] SimdMathTest.exp2 26: [ OK ] SimdMathTest.exp2 (2 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe -26: [ OK ] SimdMathTest.exp2Unsafe (0 ms) +26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 26: [ RUN ] SimdMathTest.exp -26: [ OK ] SimdMathTest.exp (2 ms) +26: [ OK ] SimdMathTest.exp (10 ms) 26: [ RUN ] SimdMathTest.expUnsafe 26: [ OK ] SimdMathTest.expUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erf @@ -57189,64 +57221,64 @@ 26: [ RUN ] SimdMathTest.sin 26: [ OK ] SimdMathTest.sin (1 ms) 26: [ RUN ] SimdMathTest.cos -26: [ OK ] SimdMathTest.cos (1 ms) +26: [ OK ] SimdMathTest.cos (2 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (11 ms) +26: [ OK ] SimdMathTest.tan (37 ms) 26: [ RUN ] SimdMathTest.asin -26: [ OK ] SimdMathTest.asin (0 ms) +26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos -26: [ OK ] SimdMathTest.acos (1 ms) +26: [ OK ] SimdMathTest.acos (0 ms) 26: [ RUN ] SimdMathTest.atan -26: [ OK ] SimdMathTest.atan (5 ms) +26: [ OK ] SimdMathTest.atan (1 ms) 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection 26: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection -26: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) +26: [ OK ] SimdMathTest.pmePotentialCorrection (10 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy -26: [ OK ] SimdMathTest.sqrtSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy -26: [ OK ] SimdMathTest.invSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy -26: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.logSingleAccuracy (8 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy -26: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy -26: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.expSingleAccuracy (10 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy 26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy 26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (10 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy 26: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (17 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy 26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (5 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -26: [----------] 45 tests from SimdMathTest (72 ms total) +26: [----------] 45 tests from SimdMathTest (157 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -57278,7 +57310,7 @@ 26: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 26: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 26: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) -26: [----------] 3 tests from ArrayRefTest/2 (0 ms total) +26: [----------] 3 tests from ArrayRefTest/2 (1 ms total) 26: 26: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 26: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks @@ -57356,7 +57388,7 @@ 26: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 26: [ RUN ] SimdIntegerTest.cvtIB2B 26: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -26: [----------] 23 tests from SimdIntegerTest (1 ms total) +26: [----------] 23 tests from SimdIntegerTest (0 ms total) 26: 26: [----------] 32 tests from Simd4FloatingpointTest 26: [ RUN ] Simd4FloatingpointTest.setZero @@ -57423,7 +57455,7 @@ 26: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 26: [ RUN ] Simd4FloatingpointTest.transpose 26: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -26: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) +26: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) 26: 26: [----------] 1 test from Simd4VectorOperationsTest 26: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -57432,10 +57464,10 @@ 26: 26: [----------] 2 tests from Simd4MathTest 26: [ RUN ] Simd4MathTest.invsqrt -26: [ OK ] Simd4MathTest.invsqrt (0 ms) +26: [ OK ] Simd4MathTest.invsqrt (5 ms) 26: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy 26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) -26: [----------] 2 tests from Simd4MathTest (0 ms total) +26: [----------] 2 tests from Simd4MathTest (5 ms total) 26: 26: [----------] 41 tests from SimdScalarTest 26: [ RUN ] SimdScalarTest.load @@ -57520,7 +57552,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (1 ms total) +26: [----------] 41 tests from SimdScalarTest (0 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -57619,9 +57651,9 @@ 26: [----------] 37 tests from SimdScalarMathTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 277 tests from 22 test cases ran. (76 ms total) +26: [==========] 277 tests from 22 test cases ran. (165 ms total) 26: [ PASSED ] 277 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.18 sec +26/27 Test #26: SimdUnitTests .................... Passed 0.30 sec test 27 Start 27: CompatibilityHelpersTests @@ -57662,17 +57694,17 @@ 27: [----------] Global test environment tear-down 27: [==========] 6 tests from 6 test cases ran. (0 ms total) 27: [ PASSED ] 6 tests. -27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.12 sec +27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.10 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 4.37 sec*proc (27 tests) -MpiTest = 0.57 sec*proc (3 tests) -UnitTest = 4.37 sec*proc (27 tests) +GTest = 13.40 sec*proc (27 tests) +MpiTest = 3.18 sec*proc (3 tests) +UnitTest = 13.40 sec*proc (27 tests) -Total Test time (real) = 4.40 sec -/usr/bin/make -j16 -C build/mpich-dp tests +Total Test time (real) = 13.76 sec +/usr/bin/make -j15 -C build/mpich-dp tests make[1]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -57686,50 +57718,50 @@ cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/external/googletest /build/gromacs-2019.1/build/mpich-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +[ 1%] Built target lmfit_objlib +[ 2%] Built target tng_io_obj +[ 3%] Built target libgromacs_external Scanning dependencies of target onlinehelp-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build -[ 1%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -[ 2%] Built target libgromacs_external -[ 3%] Built target tng_io_obj +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build Scanning dependencies of target gmock @@ -57752,9 +57784,9 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 81%] Built target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 81%] Built target onlinehelp-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 81%] Built target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 81%] Built target onlinehelp-test-shared cd /build/gromacs-2019.1/build/mpich-dp/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /build/gromacs-2019.1/build/mpich-dp/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o @@ -57795,114 +57827,121 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -Scanning dependencies of target compat-test -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-mpi-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +Scanning dependencies of target compat-test +Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= -Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build +Scanning dependencies of target testutils-test make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -Scanning dependencies of target listed-forces-test -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -Scanning dependencies of target mdlib-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target listed-forces-test +Scanning dependencies of target applied-forces-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp +Scanning dependencies of target domdec-test Scanning dependencies of target fft-test -Scanning dependencies of target testutils-test +Scanning dependencies of target hardware-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -Scanning dependencies of target gpu_utils-test -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp +Scanning dependencies of target ewald-test +Scanning dependencies of target gpu_utils-test +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp -Scanning dependencies of target domdec-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -Scanning dependencies of target math-test -Scanning dependencies of target hardware-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build Scanning dependencies of target commandline-test +Scanning dependencies of target mdlib-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build -Scanning dependencies of target ewald-test -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp +Scanning dependencies of target math-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 83%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -57911,14 +57950,14 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' @@ -57926,37 +57965,33 @@ Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp -[ 84%] Built target testutils-mpi-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 84%] Built target applied-forces-test +[ 85%] Built target applied-forces-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -57965,21 +58000,22 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 84%] Built target fft-test +[ 85%] Built target fft-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp Scanning dependencies of target random-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -[ 85%] Built target hardware-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 85%] Built target domdec-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -57988,12 +58024,6 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend @@ -58004,8 +58034,12 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 85%] Built target domdec-test +[ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -58014,31 +58048,29 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp -[ 85%] Built target mdrunutility-test +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 85%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 86%] Built target testutils-test +[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= @@ -58047,20 +58079,41 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 86%] Built target restraintpotential-test +[ 86%] Built target utility-mpi-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp Scanning dependencies of target fileio-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp -[ 86%] Built target mdrunutility-mpi-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 86%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -58069,25 +58122,34 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 87%] Built target utility-mpi-test +[ 87%] Built target testutils-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 Scanning dependencies of target awh-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp +[ 88%] Built target taskassignment-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 87%] Built target onlinehelp-test +[ 89%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -58096,111 +58158,72 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 88%] Built target pull-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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/usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 90%] Built target ewald-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +[ 90%] Built target commandline-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 90%] Built target gpu_utils-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 90%] Built target table-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 91%] Built target mdlib-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp +[ 91%] Built target fileio-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 92%] Built target fileio-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +[ 92%] Built target ewald-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 93%] Built target random-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd 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-DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong 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/usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 94%] Built target mdlib-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 94%] Built target awh-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp @@ -58208,19 +58231,28 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 94%] Built target math-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 96%] Built target simd-test +[ 95%] Built target options-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 97%] Built target options-test +[ 97%] Built target simd-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' @@ -58270,7 +58302,7 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput @@ -58279,7 +58311,7 @@ 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (8 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -58287,39 +58319,39 @@ 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (9 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData -1: [ OK ] ReferenceDataTest.HandlesMissingData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -58331,26 +58363,26 @@ 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (9 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (7 ms total) +1: [----------] 34 tests from ReferenceDataTest (23 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -58392,9 +58424,9 @@ 1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (13 ms total) +1: [==========] 59 tests from 5 test cases ran. (33 ms total) 1: [ PASSED ] 59 tests. - 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.05 sec + 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.17 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -58404,13 +58436,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (2 ms) -2: [----------] 1 test from MpiSelfTest (2 ms total) +2: [ OK ] MpiSelfTest.Runs (19 ms) +2: [----------] 1 test from MpiSelfTest (44 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (2 ms total) +2: [==========] 1 test from 1 test case ran. (44 ms total) 2: [ PASSED ] 1 test. - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.07 sec + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.37 sec test 3 Start 3: MdlibUnitTest @@ -58427,10 +58459,10 @@ 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (1 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) -3: [----------] 3 tests from PrintEbin (1 ms total) +3: [----------] 3 tests from PrintEbin (0 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond @@ -58463,7 +58495,7 @@ 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) -3: [----------] 7 tests from SignalTest (0 ms total) +3: [----------] 7 tests from SignalTest (1 ms total) 3: 3: [----------] 9 tests from UpdateGroups 3: [ RUN ] UpdateGroups.ethaneUA @@ -58481,19 +58513,19 @@ 3: [ RUN ] UpdateGroups.fourAtomsWithSettle 3: [ OK ] UpdateGroups.fourAtomsWithSettle (0 ms) 3: [ RUN ] UpdateGroups.waterFlexAngle -3: [ OK ] UpdateGroups.waterFlexAngle (1 ms) +3: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 3: [ RUN ] UpdateGroups.twoMoltypes 3: [ OK ] UpdateGroups.twoMoltypes (0 ms) -3: [----------] 9 tests from UpdateGroups (1 ms total) +3: [----------] 9 tests from UpdateGroups (0 ms total) 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs 3: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) -3: [----------] 1 test from UpdateGroupsCog (1 ms total) +3: [----------] 1 test from UpdateGroupsCog (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 @@ -58540,12 +58572,12 @@ 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) -3: [----------] 24 tests from WithParameters/SettleTest (0 ms total) +3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (3 ms total) +3: [==========] 50 tests from 8 test cases ran. (2 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.05 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 0.12 sec test 4 Start 4: AppliedForcesUnitTest @@ -58565,7 +58597,7 @@ 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (0 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.04 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.10 sec test 5 Start 5: ListedForcesTest @@ -58579,7 +58611,7 @@ 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz -5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) +5: [ OK ] BondedTest.BondAnglePbcXyz (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy @@ -58609,7 +58641,7 @@ 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (1 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.05 sec + 5/27 Test #5: ListedForcesTest ................. Passed 0.14 sec test 6 Start 6: CommandLineUnitTests @@ -58619,27 +58651,27 @@ 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -58649,9 +58681,9 @@ 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) @@ -58683,13 +58715,13 @@ 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -6: [----------] 13 tests from CommandLineParserTest (0 ms total) +6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath -6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (1 ms) +6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory @@ -58698,7 +58730,7 @@ 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) +6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 21 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs @@ -58722,7 +58754,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults -6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (8 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension @@ -58738,17 +58770,17 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -6: [----------] 21 tests from ParseCommonArgsTest (2 ms total) +6: [----------] 21 tests from ParseCommonArgsTest (10 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (8 ms total) +6: [==========] 55 tests from 6 test cases ran. (15 ms total) 6: [ PASSED ] 55 tests. - 6/27 Test #6: CommandLineUnitTests ............. Passed 0.05 sec + 6/27 Test #6: CommandLineUnitTests ............. Passed 0.13 sec test 7 Start 7: DomDecTests @@ -58771,7 +58803,7 @@ 7: [ OK ] HashedMap.LinkedEntries (0 ms) 7: [ RUN ] HashedMap.ResizesTable 7: [ OK ] HashedMap.ResizesTable (0 ms) -7: [----------] 7 tests from HashedMap (1 ms total) +7: [----------] 7 tests from HashedMap (0 ms total) 7: 7: [----------] 2 tests from LocalAtomSetManager 7: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet @@ -58781,9 +58813,9 @@ 7: [----------] 2 tests from LocalAtomSetManager (0 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 9 tests from 2 test cases ran. (1 ms total) +7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.05 sec + 7/27 Test #7: DomDecTests ...................... Passed 0.11 sec test 8 Start 8: EwaldUnitTests @@ -58799,73 +58831,73 @@ 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (21 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (1 ms) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (42 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (13 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (13 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (7 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (18 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (6 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (54 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (6 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (145 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 @@ -58875,19 +58907,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 @@ -58899,21 +58931,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 @@ -58921,21 +58953,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 @@ -58945,37 +58977,37 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 @@ -58987,11 +59019,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 @@ -59013,39 +59045,39 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 @@ -59057,19 +59089,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 @@ -59081,11 +59113,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 @@ -59097,17 +59129,17 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 @@ -59121,11 +59153,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (3 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 @@ -59137,36 +59169,36 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (37 ms total) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) +8: [----------] 144 tests from SaneInput/PmeGatherTest (52 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 @@ -59174,12 +59206,12 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (15 ms total) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) +8: [----------] 16 tests from SaneInput/PmeSolveTest (23 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 @@ -59193,18 +59225,18 @@ 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (6 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (7 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 @@ -59212,12 +59244,12 @@ 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (9 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (13 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -59227,38 +59259,38 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (3 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (14 ms total) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (19 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 @@ -59266,79 +59298,79 @@ 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (9 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (14 ms total) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (31 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (8 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (16 ms total) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (28 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (26 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (42 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (10 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (81 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (242 ms total) +8: [==========] 257 tests from 10 test cases ran. (768 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 0.31 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 0.97 sec test 9 Start 9: FFTUnitTests @@ -59348,20 +59380,20 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (15 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (56 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (19 ms) -9: [----------] 2 tests from ManyFFTTest (35 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (73 ms) +9: [----------] 2 tests from ManyFFTTest (130 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (6 ms) -9: [----------] 1 test from FFTTest (7 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (21 ms) +9: [----------] 1 test from FFTTest (21 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (1 ms) -9: [----------] 1 test from FFFTest3D (1 ms total) +9: [ OK ] FFFTest3D.Real5_6_9 (3 ms) +9: [----------] 1 test from FFFTest3D (4 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 @@ -59369,27 +59401,27 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (6 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (4 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (12 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (21 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (17 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (39 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (28 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (66 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (82 ms total) +9: [==========] 14 tests from 4 test cases ran. (221 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.12 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 0.38 sec test 10 Start 10: GpuUtilsUnitTests @@ -59476,7 +59508,7 @@ 10: [ OK ] HostAllocatorTestNoMem/1.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/1.Comparison 10: [ OK ] HostAllocatorTestNoMem/1.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/1 (0 ms total) +10: [----------] 5 tests from HostAllocatorTestNoMem/1 (2 ms total) 10: 10: [----------] 5 tests from HostAllocatorTestNoMem/2, where TypeParam = gmx::BasicVector 10: [ RUN ] HostAllocatorTestNoMem/2.CreateVector @@ -59489,7 +59521,7 @@ 10: [ OK ] HostAllocatorTestNoMem/2.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/2.Comparison 10: [ OK ] HostAllocatorTestNoMem/2.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/2 (1 ms total) +10: [----------] 5 tests from HostAllocatorTestNoMem/2 (0 ms total) 10: 10: [----------] 5 tests from HostAllocatorTestNoMem/3, where TypeParam = gmx::test::MoveOnly 10: [ RUN ] HostAllocatorTestNoMem/3.CreateVector @@ -59545,7 +59577,7 @@ 10: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.Move @@ -59575,9 +59607,9 @@ 10: [----------] 4 tests from AllocatorTest/3 (0 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 60 tests from 19 test cases ran. (2 ms total) +10: [==========] 60 tests from 19 test cases ran. (3 ms total) 10: [ PASSED ] 60 tests. -10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.05 sec +10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.10 sec test 11 Start 11: HardwareUnitTests @@ -59587,19 +59619,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (27 ms) +11: [ OK ] HardwareTopologyTest.Execute (275 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (24 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (112 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (26 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (110 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (24 ms) -11: [----------] 4 tests from HardwareTopologyTest (101 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (64 ms) +11: [----------] 4 tests from HardwareTopologyTest (569 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (101 ms total) +11: [==========] 4 tests from 1 test case ran. (569 ms total) 11: [ PASSED ] 4 tests. -11/27 Test #11: HardwareUnitTests ................ Passed 0.14 sec +11/27 Test #11: HardwareUnitTests ................ Passed 0.68 sec test 12 Start 12: MathUnitTests @@ -59659,7 +59691,7 @@ 12: [ RUN ] FunctionTest.Log2I32Bit 12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit -12: [ OK ] FunctionTest.Log2I64Bit (1 ms) +12: [ OK ] FunctionTest.Log2I64Bit (0 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor 12: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 12: [ RUN ] FunctionTest.InvsqrtFloat @@ -59673,7 +59705,7 @@ 12: [ RUN ] FunctionTest.InvcbrtDouble 12: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvcbrtInteger -12: [ OK ] FunctionTest.InvcbrtInteger (1 ms) +12: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 12: [ RUN ] FunctionTest.SixthrootFloat 12: [ OK ] FunctionTest.SixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.SixthrootDouble @@ -59681,7 +59713,7 @@ 12: [ RUN ] FunctionTest.SixthrootInteger 12: [ OK ] FunctionTest.SixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat -12: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) +12: [ OK ] FunctionTest.InvsixthrootFloat (1 ms) 12: [ RUN ] FunctionTest.InvsixthrootDouble 12: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootInteger @@ -59695,15 +59727,15 @@ 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) -12: [----------] 21 tests from FunctionTest (4 ms total) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) +12: [----------] 21 tests from FunctionTest (10 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent 12: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 12: [ RUN ] InvertMatrixTest.ComputesInverse 12: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) -12: [----------] 2 tests from InvertMatrixTest (0 ms total) +12: [----------] 2 tests from InvertMatrixTest (1 ms total) 12: 12: [----------] 2 tests from InvertBoxMatrixTest 12: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent @@ -59798,7 +59830,7 @@ 12: [ OK ] PaddedVectorTest/7.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/7.CanSwap 12: [ OK ] PaddedVectorTest/7.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/7 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/7 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/8, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 12: [ RUN ] PaddedVectorTest/8.ConstructsResizesAndReserves @@ -59889,12 +59921,12 @@ 12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (0 ms total) +12: [----------] 33 tests from RVecTest (1 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (5 ms total) +12: [==========] 112 tests from 20 test cases ran. (13 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.05 sec +12/27 Test #12: MathUnitTests .................... Passed 0.15 sec test 13 Start 13: MdrunUtilityUnitTests @@ -59908,7 +59940,7 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 13: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads @@ -59920,7 +59952,7 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride -13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced @@ -59931,20 +59963,20 @@ 13: NOTE: Affinity setting failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (10 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (5 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (3 ms) +13: [----------] 17 tests from ThreadAffinityTest (16 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (5 ms total) +13: [==========] 17 tests from 1 test case ran. (16 ms total) 13: [ PASSED ] 17 tests. -13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.04 sec +13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.14 sec test 14 Start 14: MdrunUtilityMpiUnitTests @@ -59954,18 +59986,18 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (46 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (11 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (38 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (16 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (3 ms total) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (143 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly @@ -59977,17 +60009,17 @@ 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (3 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (2 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (7 ms total) +14: [==========] 13 tests from 2 test cases ran. (149 ms total) 14: [ PASSED ] 13 tests. -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.11 sec +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.54 sec test 15 Start 15: OnlineHelpUnitTests @@ -60016,8 +60048,8 @@ 15: [ RUN ] HelpManagerTest.HandlesSubTopics 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics -15: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) -15: [----------] 3 tests from HelpManagerTest (1 ms total) +15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) +15: [----------] 3 tests from HelpManagerTest (0 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -60040,7 +60072,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList -15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsBulletList (8 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable @@ -60049,12 +60081,12 @@ 15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles 15: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -15: [----------] 11 tests from HelpWriterContextTest (1 ms total) +15: [----------] 11 tests from HelpWriterContextTest (9 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (2 ms total) +15: [==========] 22 tests from 4 test cases ran. (11 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.03 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.14 sec test 16 Start 16: OptionsUnitTests @@ -60066,11 +60098,11 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 16: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval -16: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 16: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) @@ -60091,12 +60123,12 @@ 16: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 16: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 16: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix -16: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) -16: [----------] 8 tests from FileNameOptionTest (0 ms total) +16: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (12 ms) +16: [----------] 8 tests from FileNameOptionTest (13 ms total) 16: 16: [----------] 15 tests from FileNameOptionManagerTest 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension -16: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (1 ms) +16: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 16: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile @@ -60125,7 +60157,7 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -60151,7 +60183,7 @@ 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -16: [----------] 9 tests from OptionsAssignerTest (1 ms total) +16: [----------] 9 tests from OptionsAssignerTest (0 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest 16: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -60168,7 +60200,7 @@ 16: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 16: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue -16: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) +16: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (1 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 16: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow @@ -60191,7 +60223,7 @@ 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -60268,14 +60300,14 @@ 16: 16: [----------] 4 tests from TimeUnitBehaviorTest 16: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue -16: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) +16: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (1 ms) 16: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 16: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 16: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 16: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) -16: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) +16: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) 16: 16: [----------] 2 tests from TreeValueSupportAssignTest 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree @@ -60300,7 +60332,7 @@ 16: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 16: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 16: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) -16: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total) +16: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 16: 16: [----------] 6 tests from TreeValueSupportAdjustTest 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues @@ -60319,7 +60351,7 @@ 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption -16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option @@ -60333,13 +60365,13 @@ 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption -16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -16: [----------] 8 tests from TreeValueSupportTest (0 ms total) +16: [ OK ] TreeValueSupportTest.SupportsEnumOption (9 ms) +16: [----------] 8 tests from TreeValueSupportTest (10 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (4 ms total) +16: [==========] 110 tests from 18 test cases ran. (26 ms total) 16: [ PASSED ] 110 tests. -16/27 Test #16: OptionsUnitTests ................. Passed 0.05 sec +16/27 Test #16: OptionsUnitTests ................. Passed 0.15 sec test 17 Start 17: RandomUnitTests @@ -60378,12 +60410,12 @@ 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (1 ms total) +17: [----------] 4 tests from NormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed -17: [ OK ] SeedTest.makeRandomSeed (0 ms) -17: [----------] 1 test from SeedTest (0 ms total) +17: [ OK ] SeedTest.makeRandomSeed (1 ms) +17: [----------] 1 test from SeedTest (1 ms total) 17: 17: [----------] 6 tests from TabulatedNormalDistributionTest 17: [ RUN ] TabulatedNormalDistributionTest.Output14 @@ -60402,20 +60434,20 @@ 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (6 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (6 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical 17: [ OK ] ThreeFry2x64Test.Logical (0 ms) 17: [ RUN ] ThreeFry2x64Test.InternalCounterSequence -17: [ OK ] ThreeFry2x64Test.InternalCounterSequence (1 ms) +17: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 17: [ RUN ] ThreeFry2x64Test.Reseed 17: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 17: [ RUN ] ThreeFry2x64Test.Discard 17: [ OK ] ThreeFry2x64Test.Discard (0 ms) 17: [ RUN ] ThreeFry2x64Test.InvalidCounter -17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) +17: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) @@ -60454,7 +60486,7 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 @@ -60462,13 +60494,13 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (1 ms) 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (5 ms total) +17: [==========] 44 tests from 10 test cases ran. (9 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.05 sec +17/27 Test #17: RandomUnitTests .................. Passed 0.14 sec test 18 Start 18: RestraintTests @@ -60484,7 +60516,7 @@ 18: [----------] Global test environment tear-down 18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. -18/27 Test #18: RestraintTests ................... Passed 0.04 sec +18/27 Test #18: RestraintTests ................... Passed 0.12 sec test 19 Start 19: TableUnitTests @@ -60498,50 +60530,50 @@ 19: [ RUN ] SplineTableTest/0.Sinc 19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (30 ms) +19: [ OK ] SplineTableTest/0.LJ12 (48 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection 19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) +19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (45 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (113 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (47 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (126 ms) 19: [ RUN ] SplineTableTest/0.Simd -19: [ OK ] SplineTableTest/0.Simd (11 ms) +19: [ OK ] SplineTableTest/0.Simd (25 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (43 ms) -19: [----------] 10 tests from SplineTableTest/0 (182 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (348 ms) +19: [----------] 10 tests from SplineTableTest/0 (672 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) 19: [ RUN ] SplineTableTest/1.Sinc 19: [ OK ] SplineTableTest/1.Sinc (2 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (58 ms) +19: [ OK ] SplineTableTest/1.LJ12 (198 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection 19: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (5 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) +19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (114 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (408 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (119 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (320 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (26 ms) +19: [ OK ] SplineTableTest/1.Simd (68 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (106 ms) -19: [----------] 10 tests from SplineTableTest/1 (428 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (297 ms) +19: [----------] 10 tests from SplineTableTest/1 (1305 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (610 ms total) +19: [==========] 20 tests from 2 test cases ran. (1978 ms total) 19: [ PASSED ] 20 tests. -19/27 Test #19: TableUnitTests ................... Passed 0.65 sec +19/27 Test #19: TableUnitTests ................... Passed 2.10 sec test 20 Start 20: TaskAssignmentUnitTests @@ -60555,13 +60587,13 @@ 20: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 20: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow -20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) -20: [----------] 3 tests from GpuIdStringHandlingTest (0 ms total) +20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) +20: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 3 tests from 1 test case ran. (0 ms total) +20: [==========] 3 tests from 1 test case ran. (1 ms total) 20: [ PASSED ] 3 tests. -20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.04 sec +20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.14 sec test 21 Start 21: UtilityUnitTests @@ -60575,25 +60607,25 @@ 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment -21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (4 ms) 21: [ RUN ] AllocatorTest/0.Move 21: [ OK ] AllocatorTest/0.Move (0 ms) 21: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/0 (0 ms total) +21: [----------] 5 tests from AllocatorTest/0 (4 ms total) 21: 21: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.Move 21: [ OK ] AllocatorTest/1.Move (0 ms) 21: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/1 (0 ms total) +21: [----------] 5 tests from AllocatorTest/1 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -60606,7 +60638,7 @@ 21: [ OK ] AllocatorTest/2.Move (0 ms) 21: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/2 (1 ms total) +21: [----------] 5 tests from AllocatorTest/2 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -60638,7 +60670,7 @@ 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.Move @@ -60786,7 +60818,7 @@ 21: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/5 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/5 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks @@ -60828,7 +60860,7 @@ 21: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/7 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks @@ -60975,7 +61007,7 @@ 21: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/14 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/14 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks @@ -61038,7 +61070,7 @@ 21: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/17 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks @@ -61088,16 +61120,16 @@ 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (4 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -21: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) +21: [----------] 4 tests from KeyValueTreeSerializerTest (5 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest 21: [ RUN ] TreeValueTransformTest.SimpleTransforms 21: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 21: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive -21: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (1 ms) +21: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 21: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 21: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromString @@ -61106,7 +61138,7 @@ 21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -21: [----------] 6 tests from TreeValueTransformTest (1 ms total) +21: [----------] 6 tests from TreeValueTransformTest (0 ms total) 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -61115,9 +61147,9 @@ 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported -21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (1 ms) +21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) 21: [----------] 2 tests from RegexBasicTest (1 ms total) 21: 21: [----------] 5 tests from LoggerTest @@ -61181,12 +61213,12 @@ 21: [ RUN ] StringUtilityTest.StripString 21: [ OK ] StringUtilityTest.StripString (0 ms) 21: [ RUN ] StringUtilityTest.SplitString -21: [ OK ] StringUtilityTest.SplitString (0 ms) +21: [ OK ] StringUtilityTest.SplitString (1 ms) 21: [ RUN ] StringUtilityTest.SplitDelimitedString 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) -21: [----------] 7 tests from StringUtilityTest (0 ms total) +21: [----------] 7 tests from StringUtilityTest (1 ms total) 21: 21: [----------] 2 tests from FormatStringTest 21: [ RUN ] FormatStringTest.HandlesBasicFormatting @@ -61237,7 +61269,7 @@ 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesIndent -21: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) +21: [ OK ] TextLineWrapperTest.HandlesIndent (1 ms) 21: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 21: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesHangingIndent @@ -61246,7 +61278,7 @@ 21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -21: [----------] 10 tests from TextLineWrapperTest (0 ms total) +21: [----------] 10 tests from TextLineWrapperTest (1 ms total) 21: 21: [----------] 6 tests from TextWriterTest 21: [ RUN ] TextWriterTest.WritesLines @@ -61260,8 +61292,8 @@ 21: [ RUN ] TextWriterTest.TracksNewlines 21: [ OK ] TextWriterTest.TracksNewlines (0 ms) 21: [ RUN ] TextWriterTest.PreservesTrailingWhitespace -21: [ OK ] TextWriterTest.PreservesTrailingWhitespace (1 ms) -21: [----------] 6 tests from TextWriterTest (1 ms total) +21: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) +21: [----------] 6 tests from TextWriterTest (0 ms total) 21: 21: [----------] 1 test from TypeTraitsTest 21: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -61339,24 +61371,24 @@ 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (12 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (8 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (8 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (8 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (8 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (8 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (52 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -61376,9 +61408,9 @@ 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (10 ms total) +21: [==========] 325 tests from 52 test cases ran. (69 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.06 sec +21/27 Test #21: UtilityUnitTests ................. Passed 0.20 sec test 22 Start 22: UtilityMpiUnitTests @@ -61388,15 +61420,15 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (2 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (43 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (2 ms total) +22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (12 ms) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (87 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (2 ms total) +22: [==========] 2 tests from 1 test case ran. (87 ms total) 22: [ PASSED ] 2 tests. -22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.09 sec +22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.39 sec test 23 Start 23: FileIOTests @@ -61460,14 +61492,14 @@ 23: 23: 23: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -23: [----------] 9 tests from ReadTest (1 ms total) +23: [----------] 9 tests from ReadTest (5 ms total) 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile -23: [ OK ] TngTest.CanOpenTngFile (0 ms) +23: [ OK ] TngTest.CanOpenTngFile (1 ms) 23: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 23: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -23: [----------] 2 tests from TngTest (0 ms total) +23: [----------] 2 tests from TngTest (1 ms total) 23: 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 @@ -61475,15 +61507,15 @@ 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (6 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (4 ms total) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (8 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (6 ms total) +23: [==========] 17 tests from 4 test cases ran. (16 ms total) 23: [ PASSED ] 17 tests. -23/27 Test #23: FileIOTests ...................... Passed 0.04 sec +23/27 Test #23: FileIOTests ...................... Passed 0.14 sec test 24 Start 24: PullTest @@ -61502,12 +61534,12 @@ 24: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 24: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 24: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) -24: [----------] 5 tests from PullTest (1 ms total) +24: [----------] 5 tests from PullTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 5 tests from 1 test case ran. (1 ms total) +24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. -24/27 Test #24: PullTest ......................... Passed 0.04 sec +24/27 Test #24: PullTest ......................... Passed 0.11 sec test 25 Start 25: AwhTest @@ -61517,21 +61549,21 @@ 25: [----------] Global test environment set-up. 25: [----------] 1 test from BiasTest 25: [ RUN ] BiasTest.DetectsCovering -25: [ OK ] BiasTest.DetectsCovering (1 ms) -25: [----------] 1 test from BiasTest (1 ms total) +25: [ OK ] BiasTest.DetectsCovering (0 ms) +25: [----------] 1 test from BiasTest (0 ms total) 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (1 ms) -25: [----------] 1 test from gridTest (1 ms total) +25: [ OK ] gridTest.neighborhood (2 ms) +25: [----------] 1 test from gridTest (2 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 @@ -61539,22 +61571,22 @@ 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (3 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -25: [----------] 8 tests from WithParameters/BiasTest (4 ms total) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) +25: [----------] 8 tests from WithParameters/BiasTest (7 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) -25: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) +25: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (7 ms total) +25: [==========] 12 tests from 4 test cases ran. (9 ms total) 25: [ PASSED ] 12 tests. -25/27 Test #25: AwhTest .......................... Passed 0.04 sec +25/27 Test #25: AwhTest .......................... Passed 0.11 sec test 26 Start 26: SimdUnitTests @@ -61715,9 +61747,9 @@ 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair -26: [ OK ] SimdMathTest.invsqrtPair (2 ms) +26: [ OK ] SimdMathTest.invsqrtPair (1 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (1 ms) +26: [ OK ] SimdMathTest.sqrt (2 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe 26: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 26: [ RUN ] SimdMathTest.inv @@ -61727,78 +61759,78 @@ 26: [ RUN ] SimdMathTest.log 26: [ OK ] SimdMathTest.log (1 ms) 26: [ RUN ] SimdMathTest.exp2 -26: [ OK ] SimdMathTest.exp2 (9 ms) +26: [ OK ] SimdMathTest.exp2 (8 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe 26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 26: [ RUN ] SimdMathTest.exp -26: [ OK ] SimdMathTest.exp (7 ms) +26: [ OK ] SimdMathTest.exp (9 ms) 26: [ RUN ] SimdMathTest.expUnsafe 26: [ OK ] SimdMathTest.expUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erf -26: [ OK ] SimdMathTest.erf (2 ms) +26: [ OK ] SimdMathTest.erf (3 ms) 26: [ RUN ] SimdMathTest.erfc -26: [ OK ] SimdMathTest.erfc (1 ms) +26: [ OK ] SimdMathTest.erfc (2 ms) 26: [ RUN ] SimdMathTest.sin 26: [ OK ] SimdMathTest.sin (2 ms) 26: [ RUN ] SimdMathTest.cos 26: [ OK ] SimdMathTest.cos (2 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (5 ms) +26: [ OK ] SimdMathTest.tan (7 ms) 26: [ RUN ] SimdMathTest.asin -26: [ OK ] SimdMathTest.asin (0 ms) +26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos -26: [ OK ] SimdMathTest.acos (0 ms) +26: [ OK ] SimdMathTest.acos (1 ms) 26: [ RUN ] SimdMathTest.atan 26: [ OK ] SimdMathTest.atan (1 ms) 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection 26: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy 26: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy -26: [ OK ] SimdMathTest.invSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy 26: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy -26: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracy (3 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy -26: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.expSingleAccuracy (3 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy -26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy 26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy 26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy -26: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (4 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (6 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy -26: [ OK ] SimdMathTest.acosSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy 26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -26: [----------] 45 tests from SimdMathTest (64 ms total) +26: [----------] 45 tests from SimdMathTest (80 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -61865,7 +61897,7 @@ 26: [ RUN ] SimdIntegerTest.setZero 26: [ OK ] SimdIntegerTest.setZero (0 ms) 26: [ RUN ] SimdIntegerTest.set -26: [ OK ] SimdIntegerTest.set (0 ms) +26: [ OK ] SimdIntegerTest.set (1 ms) 26: [ RUN ] SimdIntegerTest.add 26: [ OK ] SimdIntegerTest.add (0 ms) 26: [ RUN ] SimdIntegerTest.sub @@ -61908,7 +61940,7 @@ 26: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 26: [ RUN ] SimdIntegerTest.cvtIB2B 26: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -26: [----------] 23 tests from SimdIntegerTest (0 ms total) +26: [----------] 23 tests from SimdIntegerTest (1 ms total) 26: 26: [----------] 41 tests from SimdScalarTest 26: [ RUN ] SimdScalarTest.load @@ -62092,9 +62124,9 @@ 26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 236 tests from 19 test cases ran. (67 ms total) +26: [==========] 236 tests from 19 test cases ran. (84 ms total) 26: [ PASSED ] 236 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.11 sec +26/27 Test #26: SimdUnitTests .................... Passed 0.17 sec test 27 Start 27: CompatibilityHelpersTests @@ -62135,19 +62167,19 @@ 27: [----------] Global test environment tear-down 27: [==========] 6 tests from 6 test cases ran. (0 ms total) 27: [ PASSED ] 6 tests. -27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.04 sec +27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.13 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 2.48 sec*proc (27 tests) -MpiTest = 0.28 sec*proc (3 tests) -UnitTest = 2.48 sec*proc (27 tests) +GTest = 8.15 sec*proc (27 tests) +MpiTest = 1.31 sec*proc (3 tests) +UnitTest = 8.15 sec*proc (27 tests) -Total Test time (real) = 2.51 sec +Total Test time (real) = 8.41 sec touch build-mpich dh_testdir -/usr/bin/make -j16 -C build/openmpi +/usr/bin/make -j15 -C build/openmpi make[1]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/openmpi/CMakeFiles /build/gromacs-2019.1/build/openmpi/CMakeFiles/progress.marks @@ -62156,36 +62188,48 @@ /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/programs /build/gromacs-2019.1/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/programs /build/gromacs-2019.1/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib -Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +Scanning dependencies of target libgromacs_external +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -Scanning dependencies of target libgromacs_external -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c @@ -62197,8 +62241,6 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c @@ -62206,35 +62248,27 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 1%] Built target mdrun_objlib Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp -[ 1%] Built target mdrun_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 2%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp @@ -62270,6 +62304,8 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp @@ -62279,8 +62315,6 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 2%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp @@ -62290,14 +62324,24 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] + "%4d-%02d-%02d %02d:%02d:%02d", + ^~~~ +In file included from /usr/include/stdio.h:873, + from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, + from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp @@ -62311,19 +62355,9 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] - "%4d-%02d-%02d %02d:%02d:%02d", - ^~~~ -In file included from /usr/include/stdio.h:873, - from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, - from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp @@ -62348,10 +62382,8 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp -[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp @@ -63063,7 +63095,7 @@ make[2]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/openmpi/CMakeFiles 0 make[1]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -j16 -C build/openmpi-dp +/usr/bin/make -j15 -C build/openmpi-dp make[1]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/openmpi-dp/CMakeFiles /build/gromacs-2019.1/build/openmpi-dp/CMakeFiles/progress.marks @@ -63075,68 +63107,68 @@ /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/programs /build/gromacs-2019.1/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/programs /build/gromacs-2019.1/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +Scanning dependencies of target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c Scanning dependencies of target libgromacs_external -Scanning dependencies of target tng_io_obj -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c -Scanning dependencies of target libgromacs_generated -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c +Scanning dependencies of target libgromacs_generated +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp @@ -63147,9 +63179,9 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 1%] Built target mdrun_objlib -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp @@ -63185,14 +63217,14 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 2%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp -[ 2%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp @@ -63200,14 +63232,14 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 3%] Built target libgromacs_external cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp @@ -63231,6 +63263,14 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -63243,14 +63283,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp @@ -63273,14 +63305,14 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp -[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp @@ -63984,7 +64016,7 @@ > debian/gromacs-openmpi.README.Debian # rsh_agent: https://bugs.debian.org/494046 # oversubscribe: https://bugs.debian.org/850229#51 -/usr/bin/make -j16 -C build/openmpi tests +/usr/bin/make -j15 -C build/openmpi tests make[1]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -63995,66 +64027,66 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/external/googletest /build/gromacs-2019.1/build/openmpi/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target onlinehelp-test-shared make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +[ 1%] Built target lmfit_objlib +[ 2%] Built target libgromacs_external +[ 3%] Built target tng_io_obj make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 30%] Built target libgromacs_generated +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +Scanning dependencies of target onlinehelp-test-shared Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target gmock -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build +Scanning dependencies of target gmock make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -[ 1%] Built target lmfit_objlib -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -[ 2%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc -[ 3%] Built target libgromacs_external -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 30%] Built target libgromacs_generated -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' @@ -64064,9 +64096,9 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 81%] Built target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 81%] Built target onlinehelp-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 81%] Built target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 81%] Built target onlinehelp-test-shared cd /build/gromacs-2019.1/build/openmpi/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /build/gromacs-2019.1/build/openmpi/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o @@ -64110,165 +64142,178 @@ /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/testutils/tests /build/gromacs-2019.1/build/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/testutils/tests /build/gromacs-2019.1/build/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/testutils/tests /build/gromacs-2019.1/build/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/testutils/tests /build/gromacs-2019.1/build/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +Scanning dependencies of target testutils-mpi-test +Scanning dependencies of target listed-forces-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target compat-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target listed-forces-test +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build -Scanning dependencies of target hardware-test +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -Scanning dependencies of target testutils-mpi-test +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp -Scanning dependencies of target domdec-test -Scanning dependencies of target mdrunutility-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target gpu_utils-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target mdrunutility-mpi-test -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build +Scanning dependencies of target applied-forces-test Scanning dependencies of target testutils-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target mdlib-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -Scanning dependencies of target applied-forces-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target domdec-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp -Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target math-test -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build -Scanning dependencies of target ewald-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +Scanning dependencies of target hardware-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target onlinehelp-test -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build +Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +Scanning dependencies of target math-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp +Scanning dependencies of target ewald-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +Scanning dependencies of target commandline-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 83%] Built target testutils-mpi-test -/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= -Scanning dependencies of target options-test +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 84%] Built target compat-test +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 +Scanning dependencies of target mdrunutility-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 84%] Built target fft-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -[ 84%] Built target compat-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 84%] Built target applied-forces-test +/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +Scanning dependencies of target options-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -64277,84 +64322,90 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 84%] Built target applied-forces-test +[ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 85%] Built target hardware-test -/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 85%] Built target domdec-test +/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 85%] Built target fft-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= +[ 86%] Built target testutils-test +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 85%] Built target listed-forces-test -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 85%] Built target mdrunutility-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 86%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -[ 85%] Built target mdrunutility-mpi-test +Scanning dependencies of target utility-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 87%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build -Scanning dependencies of target utility-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 85%] Built target domdec-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +[ 87%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -64363,18 +64414,7 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test @@ -64382,157 +64422,149 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 85%] Built target onlinehelp-test +[ 87%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -[ 86%] Built target utility-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 87%] Built target onlinehelp-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 87%] Built target pull-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 88%] Built target taskassignment-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c 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/build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c 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/build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd 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CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +[ 88%] Built target pull-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 89%] Built target fileio-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 90%] Built target testutils-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +[ 89%] Built target taskassignment-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem 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/build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 90%] Built target gpu_utils-test +[ 89%] Built target gpu_utils-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat 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/build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 90%] Built target table-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 91%] Built target mdlib-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 89%] Built target table-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 89%] Built target awh-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 90%] Built target fileio-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 91%] Built target awh-test +[ 91%] Built target mdlib-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 92%] Built target commandline-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 93%] Built target ewald-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 94%] Built target random-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +[ 92%] Built target random-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 93%] Built target ewald-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 94%] Built target math-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +[ 93%] Built target math-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 96%] Built target simd-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +[ 94%] Built target commandline-test /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 97%] Built target options-test +[ 95%] Built target options-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 97%] Built target simd-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' @@ -64572,11 +64604,11 @@ 1: Test command: /build/gromacs-2019.1/build/openmpi/bin/testutils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: -------------------------------------------------------------------------- -1: [[16372,1],0]: A high-performance Open MPI point-to-point messaging module +1: [[56619,1],0]: A high-performance Open MPI point-to-point messaging module 1: was unable to find any relevant network interfaces: 1: 1: Module: OpenFabrics (openib) -1: Host: ionos15-amd64 +1: Host: i-capture-the-hostname 1: 1: Another transport will be used instead, although this may result in 1: lower performance. @@ -64588,17 +64620,17 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput @@ -64607,7 +64639,7 @@ 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -64619,15 +64651,15 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (5 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData @@ -64637,17 +64669,17 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants -1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -64655,30 +64687,30 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData -1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (4 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues -1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) +1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (5 ms total) +1: [----------] 34 tests from ReferenceDataTest (14 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -64716,24 +64748,24 @@ 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [ OK ] XvgTests.ReadIncorrect (1 ms) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (9 ms total) +1: [==========] 59 tests from 5 test cases ran. (20 ms total) 1: [ PASSED ] 59 tests. - 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.81 sec + 1/27 Test #1: TestUtilsUnitTests ............... Passed 3.44 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.openmpi "-np" "2" "/build/gromacs-2019.1/build/openmpi/bin/testutils-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: -------------------------------------------------------------------------- -2: [[16145,1],0]: A high-performance Open MPI point-to-point messaging module +2: [[56410,1],0]: A high-performance Open MPI point-to-point messaging module 2: was unable to find any relevant network interfaces: 2: 2: Module: OpenFabrics (openib) -2: Host: ionos15-amd64 +2: Host: i-capture-the-hostname 2: 2: Another transport will be used instead, although this may result in 2: lower performance. @@ -64745,26 +64777,26 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (1 ms) -2: [----------] 1 test from MpiSelfTest (1 ms total) +2: [ OK ] MpiSelfTest.Runs (10 ms) +2: [----------] 1 test from MpiSelfTest (18 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (1 ms total) +2: [==========] 1 test from 1 test case ran. (19 ms total) 2: [ PASSED ] 1 test. -2: [ionos15-amd64:3053192] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics -2: [ionos15-amd64:3053192] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.80 sec +2: [i-capture-the-hostname:1528092] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics +2: [i-capture-the-hostname:1528092] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 1.21 sec test 3 Start 3: MdlibUnitTest 3: Test command: /build/gromacs-2019.1/build/openmpi/bin/mdlib-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: -------------------------------------------------------------------------- -3: [[16172,1],0]: A high-performance Open MPI point-to-point messaging module +3: [[56326,1],0]: A high-performance Open MPI point-to-point messaging module 3: was unable to find any relevant network interfaces: 3: 3: Module: OpenFabrics (openib) -3: Host: ionos15-amd64 +3: Host: i-capture-the-hostname 3: 3: Another transport will be used instead, although this may result in 3: lower performance. @@ -64781,11 +64813,11 @@ 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) +3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest @@ -64844,7 +64876,7 @@ 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs -3: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +3: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) 3: [----------] 1 test from UpdateGroupsCog (1 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest @@ -64889,30 +64921,30 @@ 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (1 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) -3: [----------] 24 tests from WithParameters/SettleTest (0 ms total) +3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (2 ms total) +3: [==========] 50 tests from 8 test cases ran. (3 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.79 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 1.15 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /build/gromacs-2019.1/build/openmpi/bin/applied-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: -------------------------------------------------------------------------- -4: [[16026,1],0]: A high-performance Open MPI point-to-point messaging module +4: [[56541,1],0]: A high-performance Open MPI point-to-point messaging module 4: was unable to find any relevant network interfaces: 4: 4: Module: OpenFabrics (openib) -4: Host: ionos15-amd64 +4: Host: i-capture-the-hostname 4: 4: Another transport will be used instead, although this may result in 4: lower performance. @@ -64926,26 +64958,26 @@ 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating -4: [ OK ] ElectricFieldTest.Oscillating (1 ms) +4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) -4: [----------] 3 tests from ElectricFieldTest (1 ms total) +4: [----------] 3 tests from ElectricFieldTest (0 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 3 tests from 1 test case ran. (1 ms total) +4: [==========] 3 tests from 1 test case ran. (0 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.78 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 1.18 sec test 5 Start 5: ListedForcesTest 5: Test command: /build/gromacs-2019.1/build/openmpi/bin/listed-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: -------------------------------------------------------------------------- -5: [[16089,1],0]: A high-performance Open MPI point-to-point messaging module +5: [[57160,1],0]: A high-performance Open MPI point-to-point messaging module 5: was unable to find any relevant network interfaces: 5: 5: Module: OpenFabrics (openib) -5: Host: ionos15-amd64 +5: Host: i-capture-the-hostname 5: 5: Another transport will be used instead, although this may result in 5: lower performance. @@ -64969,7 +65001,7 @@ 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo -5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) +5: [ OK ] BondedTest.IfuncBondsPbcNo (1 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz @@ -64986,23 +65018,23 @@ 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) -5: [----------] 15 tests from BondedTest (0 ms total) +5: [----------] 15 tests from BondedTest (1 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 15 tests from 1 test case ran. (0 ms total) +5: [==========] 15 tests from 1 test case ran. (1 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.80 sec + 5/27 Test #5: ListedForcesTest ................. Passed 1.07 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /build/gromacs-2019.1/build/openmpi/bin/commandline-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: -------------------------------------------------------------------------- -6: [[16124,1],0]: A high-performance Open MPI point-to-point messaging module +6: [[57150,1],0]: A high-performance Open MPI point-to-point messaging module 6: was unable to find any relevant network interfaces: 6: 6: Module: OpenFabrics (openib) -6: Host: ionos15-amd64 +6: Host: i-capture-the-hostname 6: 6: Another transport will be used instead, although this may result in 6: lower performance. @@ -65014,12 +65046,12 @@ 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -6: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) +6: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes @@ -65042,14 +65074,14 @@ 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (2 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (3 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -65065,7 +65097,7 @@ 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues -6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (1 ms) +6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers @@ -65078,7 +65110,7 @@ 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -6: [----------] 13 tests from CommandLineParserTest (1 ms total) +6: [----------] 13 tests from CommandLineParserTest (0 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -65093,7 +65125,7 @@ 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) +6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 6: 6: [----------] 21 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs @@ -65133,7 +65165,7 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs @@ -65141,20 +65173,20 @@ 6: [----------] 21 tests from ParseCommonArgsTest (1 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (4 ms total) +6: [==========] 55 tests from 6 test cases ran. (8 ms total) 6: [ PASSED ] 55 tests. - 6/27 Test #6: CommandLineUnitTests ............. Passed 0.79 sec + 6/27 Test #6: CommandLineUnitTests ............. Passed 1.18 sec test 7 Start 7: DomDecTests 7: Test command: /build/gromacs-2019.1/build/openmpi/bin/domdec-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/DomDecTests.xml" 7: Test timeout computed to be: 30 7: -------------------------------------------------------------------------- -7: [[16108,1],0]: A high-performance Open MPI point-to-point messaging module +7: [[57254,1],0]: A high-performance Open MPI point-to-point messaging module 7: was unable to find any relevant network interfaces: 7: 7: Module: OpenFabrics (openib) -7: Host: ionos15-amd64 +7: Host: i-capture-the-hostname 7: 7: Another transport will be used instead, although this may result in 7: lower performance. @@ -65191,18 +65223,18 @@ 7: [----------] Global test environment tear-down 7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.81 sec + 7/27 Test #7: DomDecTests ...................... Passed 1.10 sec test 8 Start 8: EwaldUnitTests 8: Test command: /build/gromacs-2019.1/build/openmpi/bin/ewald-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/EwaldUnitTests.xml" 8: Test timeout computed to be: 30 8: -------------------------------------------------------------------------- -8: [[12672,1],0]: A high-performance Open MPI point-to-point messaging module +8: [[56934,1],0]: A high-performance Open MPI point-to-point messaging module 8: was unable to find any relevant network interfaces: 8: 8: Module: OpenFabrics (openib) -8: Host: ionos15-amd64 +8: Host: i-capture-the-hostname 8: 8: Another transport will be used instead, although this may result in 8: lower performance. @@ -65220,38 +65252,38 @@ 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (7 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (39 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 @@ -65259,26 +65291,26 @@ 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (34 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (7 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (22 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (46 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (7 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (166 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 @@ -65286,7 +65318,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 @@ -65300,9 +65332,9 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (7 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 @@ -65312,11 +65344,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 @@ -65326,13 +65358,13 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 @@ -65342,13 +65374,13 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 @@ -65358,7 +65390,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 @@ -65368,11 +65400,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 @@ -65382,7 +65414,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 @@ -65392,35 +65424,35 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 @@ -65428,7 +65460,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 @@ -65438,11 +65470,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 @@ -65452,13 +65484,13 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 @@ -65470,13 +65502,13 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 @@ -65486,7 +65518,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 @@ -65494,11 +65526,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 @@ -65508,7 +65540,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 @@ -65516,31 +65548,31 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (5 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 @@ -65548,7 +65580,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 @@ -65562,22 +65594,22 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (36 ms total) +8: [----------] 144 tests from SaneInput/PmeGatherTest (77 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 @@ -65585,60 +65617,60 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (5 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (3 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (24 ms total) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) +8: [----------] 16 tests from SaneInput/PmeSolveTest (30 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (10 ms total) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (8 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (3 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (6 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (16 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (19 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -65646,61 +65678,61 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (25 ms total) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (6 ms) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (27 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (10 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (13 ms total) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (31 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -65708,69 +65740,69 @@ 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (15 ms total) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (19 ms) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (43 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (40 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (7 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (69 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (286 ms total) +8: [==========] 257 tests from 10 test cases ran. (610 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 1.10 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 1.75 sec test 9 Start 9: FFTUnitTests 9: Test command: /build/gromacs-2019.1/build/openmpi/bin/fft-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/FFTUnitTests.xml" 9: Test timeout computed to be: 30 9: -------------------------------------------------------------------------- -9: [[12660,1],0]: A high-performance Open MPI point-to-point messaging module +9: [[56871,1],0]: A high-performance Open MPI point-to-point messaging module 9: was unable to find any relevant network interfaces: 9: 9: Module: OpenFabrics (openib) -9: Host: ionos15-amd64 +9: Host: i-capture-the-hostname 9: 9: Another transport will be used instead, although this may result in 9: lower performance. @@ -65782,20 +65814,20 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (12 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (30 ms) -9: [----------] 2 tests from ManyFFTTest (41 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (39 ms) +9: [----------] 2 tests from ManyFFTTest (52 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (7 ms) -9: [----------] 1 test from FFTTest (8 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (10 ms) +9: [----------] 1 test from FFTTest (11 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -9: [----------] 1 test from FFFTest3D (2 ms total) +9: [ OK ] FFFTest3D.Real5_6_9 (3 ms) +9: [----------] 1 test from FFFTest3D (3 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 @@ -65803,38 +65835,38 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (3 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (6 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (17 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (22 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (24 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (54 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (31 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (70 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (105 ms total) +9: [==========] 14 tests from 4 test cases ran. (137 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.91 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 1.26 sec test 10 Start 10: GpuUtilsUnitTests 10: Test command: /build/gromacs-2019.1/build/openmpi/bin/gpu_utils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/GpuUtilsUnitTests.xml" 10: Test timeout computed to be: 30 10: -------------------------------------------------------------------------- -10: [[12434,1],0]: A high-performance Open MPI point-to-point messaging module +10: [[56970,1],0]: A high-performance Open MPI point-to-point messaging module 10: was unable to find any relevant network interfaces: 10: 10: Module: OpenFabrics (openib) -10: Host: ionos15-amd64 +10: Host: i-capture-the-hostname 10: 10: Another transport will be used instead, although this may result in 10: lower performance. @@ -65956,7 +65988,7 @@ 10: [ OK ] HostAllocatorTestNoMemCopyable/0.CopyAssignment (0 ms) 10: [ RUN ] HostAllocatorTestNoMemCopyable/0.CopyConstruction 10: [ OK ] HostAllocatorTestNoMemCopyable/0.CopyConstruction (0 ms) -10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0 (0 ms total) +10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0 (1 ms total) 10: 10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1, where TypeParam = float 10: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyAssignment @@ -66003,12 +66035,12 @@ 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (1 ms total) +10: [----------] 4 tests from AllocatorTest/2 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -66024,18 +66056,18 @@ 10: [----------] Global test environment tear-down 10: [==========] 60 tests from 19 test cases ran. (1 ms total) 10: [ PASSED ] 60 tests. -10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.80 sec +10/27 Test #10: GpuUtilsUnitTests ................ Passed 1.04 sec test 11 Start 11: HardwareUnitTests 11: Test command: /build/gromacs-2019.1/build/openmpi/bin/hardware-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/HardwareUnitTests.xml" 11: Test timeout computed to be: 30 11: -------------------------------------------------------------------------- -11: [[12457,1],0]: A high-performance Open MPI point-to-point messaging module +11: [[55802,1],0]: A high-performance Open MPI point-to-point messaging module 11: was unable to find any relevant network interfaces: 11: 11: Module: OpenFabrics (openib) -11: Host: ionos15-amd64 +11: Host: i-capture-the-hostname 11: 11: Another transport will be used instead, although this may result in 11: lower performance. @@ -66047,30 +66079,30 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (34 ms) +11: [ OK ] HardwareTopologyTest.Execute (67 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (30 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (72 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (26 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (79 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (28 ms) -11: [----------] 4 tests from HardwareTopologyTest (119 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (65 ms) +11: [----------] 4 tests from HardwareTopologyTest (283 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (119 ms total) +11: [==========] 4 tests from 1 test case ran. (283 ms total) 11: [ PASSED ] 4 tests. -11/27 Test #11: HardwareUnitTests ................ Passed 0.90 sec +11/27 Test #11: HardwareUnitTests ................ Passed 1.41 sec test 12 Start 12: MathUnitTests 12: Test command: /build/gromacs-2019.1/build/openmpi/bin/math-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MathUnitTests.xml" 12: Test timeout computed to be: 30 12: -------------------------------------------------------------------------- -12: [[12503,1],0]: A high-performance Open MPI point-to-point messaging module +12: [[55306,1],0]: A high-performance Open MPI point-to-point messaging module 12: was unable to find any relevant network interfaces: 12: 12: Module: OpenFabrics (openib) -12: Host: ionos15-amd64 +12: Host: i-capture-the-hostname 12: 12: Another transport will be used instead, although this may result in 12: lower performance. @@ -66130,7 +66162,7 @@ 12: [ RUN ] FunctionTest.StaticLog2 12: [ OK ] FunctionTest.StaticLog2 (0 ms) 12: [ RUN ] FunctionTest.Log2I32Bit -12: [ OK ] FunctionTest.Log2I32Bit (0 ms) +12: [ OK ] FunctionTest.Log2I32Bit (1 ms) 12: [ RUN ] FunctionTest.Log2I64Bit 12: [ OK ] FunctionTest.Log2I64Bit (0 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor @@ -66152,7 +66184,7 @@ 12: [ RUN ] FunctionTest.SixthrootDouble 12: [ OK ] FunctionTest.SixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.SixthrootInteger -12: [ OK ] FunctionTest.SixthrootInteger (0 ms) +12: [ OK ] FunctionTest.SixthrootInteger (1 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat 12: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootDouble @@ -66166,10 +66198,10 @@ 12: [ RUN ] FunctionTest.ErfInvDouble 12: [ OK ] FunctionTest.ErfInvDouble (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -12: [----------] 21 tests from FunctionTest (2 ms total) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) +12: [----------] 21 tests from FunctionTest (3 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -66362,23 +66394,23 @@ 12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (0 ms total) +12: [----------] 33 tests from RVecTest (1 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (2 ms total) +12: [==========] 112 tests from 20 test cases ran. (4 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.78 sec +12/27 Test #12: MathUnitTests .................... Passed 1.16 sec test 13 Start 13: MdrunUtilityUnitTests 13: Test command: /build/gromacs-2019.1/build/openmpi/bin/mdrunutility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MdrunUtilityUnitTests.xml" 13: Test timeout computed to be: 30 13: -------------------------------------------------------------------------- -13: [[12542,1],0]: A high-performance Open MPI point-to-point messaging module +13: [[55447,1],0]: A high-performance Open MPI point-to-point messaging module 13: was unable to find any relevant network interfaces: 13: 13: Module: OpenFabrics (openib) -13: Host: ionos15-amd64 +13: Host: i-capture-the-hostname 13: 13: Another transport will be used instead, although this may result in 13: lower performance. @@ -66398,7 +66430,7 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads @@ -66417,31 +66449,31 @@ 13: NOTE: Affinity setting failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (2 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (4 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +13: [----------] 17 tests from ThreadAffinityTest (5 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (4 ms total) +13: [==========] 17 tests from 1 test case ran. (5 ms total) 13: [ PASSED ] 17 tests. -13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.79 sec +13/27 Test #13: MdrunUtilityUnitTests ............ Passed 1.09 sec test 14 Start 14: MdrunUtilityMpiUnitTests 14: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi/bin/mdrunutility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 14: Test timeout computed to be: 30 14: -------------------------------------------------------------------------- -14: [[12316,1],0]: A high-performance Open MPI point-to-point messaging module +14: [[56168,1],0]: A high-performance Open MPI point-to-point messaging module 14: was unable to find any relevant network interfaces: 14: 14: Module: OpenFabrics (openib) -14: Host: ionos15-amd64 +14: Host: i-capture-the-hostname 14: 14: Another transport will be used instead, although this may result in 14: lower performance. @@ -66453,22 +66485,22 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (7 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (71 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (8 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (9 ms total) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (88 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster @@ -66478,28 +66510,28 @@ 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (3 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (4 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (12 ms total) +14: [==========] 13 tests from 2 test cases ran. (92 ms total) 14: [ PASSED ] 13 tests. -14: [ionos15-amd64:3053957] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -14: [ionos15-amd64:3053957] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.86 sec +14: [i-capture-the-hostname:1529390] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +14: [i-capture-the-hostname:1529390] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.21 sec test 15 Start 15: OnlineHelpUnitTests 15: Test command: /build/gromacs-2019.1/build/openmpi/bin/onlinehelp-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/OnlineHelpUnitTests.xml" 15: Test timeout computed to be: 30 15: -------------------------------------------------------------------------- -15: [[12344,1],0]: A high-performance Open MPI point-to-point messaging module +15: [[56074,1],0]: A high-performance Open MPI point-to-point messaging module 15: was unable to find any relevant network interfaces: 15: 15: Module: OpenFabrics (openib) -15: Host: ionos15-amd64 +15: Host: i-capture-the-hostname 15: 15: Another transport will be used instead, although this may result in 15: lower performance. @@ -66517,9 +66549,9 @@ 15: [ RUN ] TextTableFormatterTest.HandlesIndentation 15: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines -15: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (1 ms) +15: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding -15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) +15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (1 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 15: [----------] 6 tests from TextTableFormatterTest (1 ms total) @@ -66546,7 +66578,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 15: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 15: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace -15: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) +15: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralText 15: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning @@ -66560,7 +66592,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsGridTable -15: [ OK ] HelpWriterContextTest.FormatsGridTable (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles 15: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 15: [----------] 11 tests from HelpWriterContextTest (1 ms total) @@ -66568,18 +66600,18 @@ 15: [----------] Global test environment tear-down 15: [==========] 22 tests from 4 test cases ran. (2 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.80 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 1.19 sec test 16 Start 16: OptionsUnitTests 16: Test command: /build/gromacs-2019.1/build/openmpi/bin/options-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/OptionsUnitTests.xml" 16: Test timeout computed to be: 30 16: -------------------------------------------------------------------------- -16: [[13193,1],0]: A high-performance Open MPI point-to-point messaging module +16: [[56252,1],0]: A high-performance Open MPI point-to-point messaging module 16: was unable to find any relevant network interfaces: 16: 16: Module: OpenFabrics (openib) -16: Host: ionos15-amd64 +16: Host: i-capture-the-hostname 16: 16: Another transport will be used instead, although this may result in 16: lower performance. @@ -66597,10 +66629,10 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -16: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) +16: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 16: 16: [----------] 8 tests from FileNameOptionTest 16: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -66635,7 +66667,7 @@ 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified -16: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (1 ms) +16: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 16: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified @@ -66652,7 +66684,7 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -66661,7 +66693,7 @@ 16: 16: [----------] 9 tests from OptionsAssignerTest 16: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter -16: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) +16: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (1 ms) 16: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 16: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter @@ -66678,7 +66710,7 @@ 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -16: [----------] 9 tests from OptionsAssignerTest (0 ms total) +16: [----------] 9 tests from OptionsAssignerTest (1 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest 16: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -66786,7 +66818,7 @@ 16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 16: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -16: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) +16: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 16: 16: [----------] 1 test from TimeUnitManagerTest 16: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -66802,7 +66834,7 @@ 16: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 16: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) -16: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) +16: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 16: 16: [----------] 2 tests from TreeValueSupportAssignTest 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree @@ -66833,7 +66865,7 @@ 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues -16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (2 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues @@ -66842,13 +66874,13 @@ 16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -16: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) +16: [----------] 6 tests from TreeValueSupportAdjustTest (2 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption -16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option 16: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsStringOption @@ -66858,26 +66890,26 @@ 16: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 16: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption -16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption 16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 16: [----------] 8 tests from TreeValueSupportTest (1 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (3 ms total) +16: [==========] 110 tests from 18 test cases ran. (6 ms total) 16: [ PASSED ] 110 tests. -16/27 Test #16: OptionsUnitTests ................. Passed 0.82 sec +16/27 Test #16: OptionsUnitTests ................. Passed 1.12 sec test 17 Start 17: RandomUnitTests 17: Test command: /build/gromacs-2019.1/build/openmpi/bin/random-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/RandomUnitTests.xml" 17: Test timeout computed to be: 30 17: -------------------------------------------------------------------------- -17: [[13299,1],0]: A high-performance Open MPI point-to-point messaging module +17: [[55980,1],0]: A high-performance Open MPI point-to-point messaging module 17: was unable to find any relevant network interfaces: 17: 17: Module: OpenFabrics (openib) -17: Host: ionos15-amd64 +17: Host: i-capture-the-hostname 17: 17: Another transport will be used instead, although this may result in 17: lower performance. @@ -66915,10 +66947,10 @@ 17: [ RUN ] NormalDistributionTest.Logical 17: [ OK ] NormalDistributionTest.Logical (0 ms) 17: [ RUN ] NormalDistributionTest.Reset -17: [ OK ] NormalDistributionTest.Reset (0 ms) +17: [ OK ] NormalDistributionTest.Reset (1 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (0 ms total) +17: [----------] 4 tests from NormalDistributionTest (1 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -66931,19 +66963,19 @@ 17: [ RUN ] TabulatedNormalDistributionTest.Output16 17: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 -17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (1 ms) +17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Logical 17: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Reset 17: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.AltParam 17: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -17: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) +17: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical @@ -66982,7 +67014,7 @@ 17: [ OK ] UniformRealDistributionTest.Reset (0 ms) 17: [ RUN ] UniformRealDistributionTest.AltParam 17: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -17: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +17: [----------] 5 tests from UniformRealDistributionTest (3 ms total) 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -67002,24 +67034,24 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (1 ms) -17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) +17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (3 ms total) +17: [==========] 44 tests from 10 test cases ran. (6 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.83 sec +17/27 Test #17: RandomUnitTests .................. Passed 1.19 sec test 18 Start 18: RestraintTests 18: Test command: /build/gromacs-2019.1/build/openmpi/bin/restraintpotential-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/RestraintTests.xml" 18: Test timeout computed to be: 30 18: -------------------------------------------------------------------------- -18: [[13096,1],0]: A high-performance Open MPI point-to-point messaging module +18: [[54730,1],0]: A high-performance Open MPI point-to-point messaging module 18: was unable to find any relevant network interfaces: 18: 18: Module: OpenFabrics (openib) -18: Host: ionos15-amd64 +18: Host: i-capture-the-hostname 18: 18: Another transport will be used instead, although this may result in 18: lower performance. @@ -67037,18 +67069,18 @@ 18: [----------] Global test environment tear-down 18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. -18/27 Test #18: RestraintTests ................... Passed 0.81 sec +18/27 Test #18: RestraintTests ................... Passed 1.10 sec test 19 Start 19: TableUnitTests 19: Test command: /build/gromacs-2019.1/build/openmpi/bin/table-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TableUnitTests.xml" 19: Test timeout computed to be: 30 19: -------------------------------------------------------------------------- -19: [[13183,1],0]: A high-performance Open MPI point-to-point messaging module +19: [[54383,1],0]: A high-performance Open MPI point-to-point messaging module 19: was unable to find any relevant network interfaces: 19: 19: Module: OpenFabrics (openib) -19: Host: ionos15-amd64 +19: Host: i-capture-the-hostname 19: 19: Another transport will be used instead, although this may result in 19: lower performance. @@ -67060,65 +67092,65 @@ 19: [----------] Global test environment set-up. 19: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/0.Sinc 19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (21 ms) +19: [ OK ] SplineTableTest/0.LJ12 (32 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection 19: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (40 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (58 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (42 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (56 ms) 19: [ RUN ] SplineTableTest/0.Simd -19: [ OK ] SplineTableTest/0.Simd (10 ms) +19: [ OK ] SplineTableTest/0.Simd (13 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (39 ms) -19: [----------] 10 tests from SplineTableTest/0 (158 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (51 ms) +19: [----------] 10 tests from SplineTableTest/0 (217 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (2 ms) 19: [ RUN ] SplineTableTest/1.Sinc -19: [ OK ] SplineTableTest/1.Sinc (0 ms) +19: [ OK ] SplineTableTest/1.Sinc (1 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (3 ms) +19: [ OK ] SplineTableTest/1.LJ12 (4 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection -19: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) +19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) +19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (7 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (8 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (6 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (9 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (2 ms) +19: [ OK ] SplineTableTest/1.Simd (3 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (12 ms) -19: [----------] 10 tests from SplineTableTest/1 (34 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (8 ms) +19: [----------] 10 tests from SplineTableTest/1 (38 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (192 ms total) +19: [==========] 20 tests from 2 test cases ran. (255 ms total) 19: [ PASSED ] 20 tests. -19/27 Test #19: TableUnitTests ................... Passed 0.98 sec +19/27 Test #19: TableUnitTests ................... Passed 1.38 sec test 20 Start 20: TaskAssignmentUnitTests 20: Test command: /build/gromacs-2019.1/build/openmpi/bin/taskassignment-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TaskAssignmentUnitTests.xml" 20: Test timeout computed to be: 30 20: -------------------------------------------------------------------------- -20: [[13175,1],0]: A high-performance Open MPI point-to-point messaging module +20: [[55107,1],0]: A high-performance Open MPI point-to-point messaging module 20: was unable to find any relevant network interfaces: 20: 20: Module: OpenFabrics (openib) -20: Host: ionos15-amd64 +20: Host: i-capture-the-hostname 20: 20: Another transport will be used instead, although this may result in 20: lower performance. @@ -67138,20 +67170,20 @@ 20: [----------] 3 tests from GpuIdStringHandlingTest (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 3 tests from 1 test case ran. (0 ms total) +20: [==========] 3 tests from 1 test case ran. (1 ms total) 20: [ PASSED ] 3 tests. -20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.79 sec +20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.98 sec test 21 Start 21: UtilityUnitTests 21: Test command: /build/gromacs-2019.1/build/openmpi/bin/utility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/UtilityUnitTests.xml" 21: Test timeout computed to be: 30 21: -------------------------------------------------------------------------- -21: [[13167,1],0]: A high-performance Open MPI point-to-point messaging module +21: [[55259,1],0]: A high-performance Open MPI point-to-point messaging module 21: was unable to find any relevant network interfaces: 21: 21: Module: OpenFabrics (openib) -21: Host: ionos15-amd64 +21: Host: i-capture-the-hostname 21: 21: Another transport will be used instead, although this may result in 21: lower performance. @@ -67180,12 +67212,12 @@ 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment -21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/1.Move 21: [ OK ] AllocatorTest/1.Move (0 ms) 21: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/1 (0 ms total) +21: [----------] 5 tests from AllocatorTest/1 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -67230,14 +67262,14 @@ 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (5 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment -21: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.Move 21: [ OK ] AllocatorTest/5.Move (0 ms) 21: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/5 (1 ms total) +21: [----------] 5 tests from AllocatorTest/5 (5 ms total) 21: 21: [----------] 1 test from AllocatorUntypedTest 21: [ RUN ] AllocatorUntypedTest.Comparison @@ -67403,7 +67435,7 @@ 21: 21: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks -21: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) +21: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (1 ms) 21: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 21: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 21: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks @@ -67420,7 +67452,7 @@ 21: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/7 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/7 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks @@ -67665,7 +67697,7 @@ 21: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 21: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 21: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks -21: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) +21: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (1 ms) 21: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 21: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks @@ -67698,7 +67730,7 @@ 21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -21: [----------] 6 tests from TreeValueTransformTest (0 ms total) +21: [----------] 6 tests from TreeValueTransformTest (1 ms total) 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -67707,14 +67739,14 @@ 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported -21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) -21: [----------] 2 tests from RegexBasicTest (1 ms total) +21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (6 ms) +21: [----------] 2 tests from RegexBasicTest (6 ms total) 21: 21: [----------] 5 tests from LoggerTest 21: [ RUN ] LoggerTest.EmptyLoggerWorks -21: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) +21: [ OK ] LoggerTest.EmptyLoggerWorks (1 ms) 21: [ RUN ] LoggerTest.LogsToStream 21: [ OK ] LoggerTest.LogsToStream (0 ms) 21: [ RUN ] LoggerTest.LogsToFile @@ -67723,7 +67755,7 @@ 21: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 21: [ RUN ] LoggerTest.LogsToMultipleStreams 21: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) -21: [----------] 5 tests from LoggerTest (2 ms total) +21: [----------] 5 tests from LoggerTest (1 ms total) 21: 21: [----------] 4 tests from MutexBasicTest 21: [ RUN ] MutexBasicTest.CanBeMade @@ -67738,12 +67770,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (4 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (12 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (0 ms total) +21: [----------] 3 tests from MutexTaskTest (17 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -67773,11 +67805,11 @@ 21: [ RUN ] StringUtilityTest.StripString 21: [ OK ] StringUtilityTest.StripString (0 ms) 21: [ RUN ] StringUtilityTest.SplitString -21: [ OK ] StringUtilityTest.SplitString (1 ms) +21: [ OK ] StringUtilityTest.SplitString (0 ms) 21: [ RUN ] StringUtilityTest.SplitDelimitedString 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) +21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) 21: [----------] 7 tests from StringUtilityTest (1 ms total) 21: 21: [----------] 2 tests from FormatStringTest @@ -67837,8 +67869,8 @@ 21: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace -21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -21: [----------] 10 tests from TextLineWrapperTest (0 ms total) +21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (1 ms) +21: [----------] 10 tests from TextLineWrapperTest (1 ms total) 21: 21: [----------] 6 tests from TextWriterTest 21: [ RUN ] TextWriterTest.WritesLines @@ -67893,14 +67925,14 @@ 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 -21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (1 ms) +21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) +21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 21: 21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -67931,24 +67963,24 @@ 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (3 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (3 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (5 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (18 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (2 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (3 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (35 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -67968,20 +68000,20 @@ 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (8 ms total) +21: [==========] 325 tests from 52 test cases ran. (70 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.81 sec +21/27 Test #21: UtilityUnitTests ................. Passed 1.20 sec test 22 Start 22: UtilityMpiUnitTests 22: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi/bin/utility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/UtilityMpiUnitTests.xml" 22: Test timeout computed to be: 30 22: -------------------------------------------------------------------------- -22: [[12956,1],1]: A high-performance Open MPI point-to-point messaging module +22: [[54831,1],0]: A high-performance Open MPI point-to-point messaging module 22: was unable to find any relevant network interfaces: 22: 22: Module: OpenFabrics (openib) -22: Host: ionos15-amd64 +22: Host: i-capture-the-hostname 22: 22: Another transport will be used instead, although this may result in 22: lower performance. @@ -68001,20 +68033,20 @@ 22: [----------] Global test environment tear-down 22: [==========] 2 tests from 1 test case ran. (1 ms total) 22: [ PASSED ] 2 tests. -22: [ionos15-amd64:3054341] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -22: [ionos15-amd64:3054341] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.83 sec +22: [i-capture-the-hostname:1530729] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +22: [i-capture-the-hostname:1530729] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +22/27 Test #22: UtilityMpiUnitTests .............. Passed 1.11 sec test 23 Start 23: FileIOTests 23: Test command: /build/gromacs-2019.1/build/openmpi/bin/fileio-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/FileIOTests.xml" 23: Test timeout computed to be: 30 23: -------------------------------------------------------------------------- -23: [[12942,1],0]: A high-performance Open MPI point-to-point messaging module +23: [[53620,1],0]: A high-performance Open MPI point-to-point messaging module 23: was unable to find any relevant network interfaces: 23: 23: Module: OpenFabrics (openib) -23: Host: ionos15-amd64 +23: Host: i-capture-the-hostname 23: 23: Another transport will be used instead, although this may result in 23: lower performance. @@ -68080,7 +68112,7 @@ 23: 23: 23: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -23: [----------] 9 tests from ReadTest (0 ms total) +23: [----------] 9 tests from ReadTest (1 ms total) 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile @@ -68093,28 +68125,28 @@ 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (4 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (3 ms total) +23: [==========] 17 tests from 4 test cases ran. (6 ms total) 23: [ PASSED ] 17 tests. -23/27 Test #23: FileIOTests ...................... Passed 0.79 sec +23/27 Test #23: FileIOTests ...................... Passed 1.14 sec test 24 Start 24: PullTest 24: Test command: /build/gromacs-2019.1/build/openmpi/bin/pull-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/PullTest.xml" 24: Test timeout computed to be: 30 24: -------------------------------------------------------------------------- -24: [[13030,1],0]: A high-performance Open MPI point-to-point messaging module +24: [[53669,1],0]: A high-performance Open MPI point-to-point messaging module 24: was unable to find any relevant network interfaces: 24: 24: Module: OpenFabrics (openib) -24: Host: ionos15-amd64 +24: Host: i-capture-the-hostname 24: 24: Another transport will be used instead, although this may result in 24: lower performance. @@ -68140,18 +68172,18 @@ 24: [----------] Global test environment tear-down 24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. -24/27 Test #24: PullTest ......................... Passed 0.80 sec +24/27 Test #24: PullTest ......................... Passed 1.12 sec test 25 Start 25: AwhTest 25: Test command: /build/gromacs-2019.1/build/openmpi/bin/awh-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/AwhTest.xml" 25: Test timeout computed to be: 30 25: -------------------------------------------------------------------------- -25: [[13593,1],0]: A high-performance Open MPI point-to-point messaging module +25: [[53289,1],0]: A high-performance Open MPI point-to-point messaging module 25: was unable to find any relevant network interfaces: 25: 25: Module: OpenFabrics (openib) -25: Host: ionos15-amd64 +25: Host: i-capture-the-hostname 25: 25: Another transport will be used instead, although this may result in 25: lower performance. @@ -68163,8 +68195,8 @@ 25: [----------] Global test environment set-up. 25: [----------] 1 test from BiasTest 25: [ RUN ] BiasTest.DetectsCovering -25: [ OK ] BiasTest.DetectsCovering (0 ms) -25: [----------] 1 test from BiasTest (0 ms total) +25: [ OK ] BiasTest.DetectsCovering (1 ms) +25: [----------] 1 test from BiasTest (1 ms total) 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood @@ -68173,22 +68205,22 @@ 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -25: [----------] 8 tests from WithParameters/BiasTest (3 ms total) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) +25: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -68198,20 +68230,20 @@ 25: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (4 ms total) +25: [==========] 12 tests from 4 test cases ran. (7 ms total) 25: [ PASSED ] 12 tests. -25/27 Test #25: AwhTest .......................... Passed 0.80 sec +25/27 Test #25: AwhTest .......................... Passed 1.13 sec test 26 Start 26: SimdUnitTests 26: Test command: /build/gromacs-2019.1/build/openmpi/bin/simd-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/SimdUnitTests.xml" 26: Test timeout computed to be: 30 26: -------------------------------------------------------------------------- -26: [[13586,1],0]: A high-performance Open MPI point-to-point messaging module +26: [[53427,1],0]: A high-performance Open MPI point-to-point messaging module 26: was unable to find any relevant network interfaces: 26: 26: Module: OpenFabrics (openib) -26: Host: ionos15-amd64 +26: Host: i-capture-the-hostname 26: 26: Another transport will be used instead, although this may result in 26: lower performance. @@ -68332,7 +68364,7 @@ 26: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 26: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 26: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -26: [----------] 42 tests from SimdFloatingpointTest (0 ms total) +26: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 26: 26: [----------] 16 tests from SimdFloatingpointUtilTest 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -68388,75 +68420,75 @@ 26: [ RUN ] SimdMathTest.invsqrtPair 26: [ OK ] SimdMathTest.invsqrtPair (0 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (0 ms) +26: [ OK ] SimdMathTest.sqrt (1 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe -26: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) +26: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (0 ms) +26: [ OK ] SimdMathTest.inv (2 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (1 ms) +26: [ OK ] SimdMathTest.log (0 ms) 26: [ RUN ] SimdMathTest.exp2 -26: [ OK ] SimdMathTest.exp2 (1 ms) +26: [ OK ] SimdMathTest.exp2 (3 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe -26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) +26: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 26: [ RUN ] SimdMathTest.exp -26: [ OK ] SimdMathTest.exp (2 ms) +26: [ OK ] SimdMathTest.exp (3 ms) 26: [ RUN ] SimdMathTest.expUnsafe 26: [ OK ] SimdMathTest.expUnsafe (0 ms) 26: [ RUN ] SimdMathTest.erf -26: [ OK ] SimdMathTest.erf (1 ms) +26: [ OK ] SimdMathTest.erf (2 ms) 26: [ RUN ] SimdMathTest.erfc 26: [ OK ] SimdMathTest.erfc (1 ms) 26: [ RUN ] SimdMathTest.sin 26: [ OK ] SimdMathTest.sin (1 ms) 26: [ RUN ] SimdMathTest.cos -26: [ OK ] SimdMathTest.cos (1 ms) +26: [ OK ] SimdMathTest.cos (6 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (7 ms) +26: [ OK ] SimdMathTest.tan (9 ms) 26: [ RUN ] SimdMathTest.asin 26: [ OK ] SimdMathTest.asin (0 ms) 26: [ RUN ] SimdMathTest.acos 26: [ OK ] SimdMathTest.acos (1 ms) 26: [ RUN ] SimdMathTest.atan -26: [ OK ] SimdMathTest.atan (0 ms) +26: [ OK ] SimdMathTest.atan (1 ms) 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection -26: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) +26: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy 26: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy -26: [ OK ] SimdMathTest.invSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy -26: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy -26: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracy (6 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy -26: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy -26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.erfSingleAccuracy (5 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy 26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy 26: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy -26: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (7 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy @@ -68466,10 +68498,10 @@ 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (6 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -26: [----------] 45 tests from SimdMathTest (42 ms total) +26: [----------] 45 tests from SimdMathTest (73 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -68646,7 +68678,7 @@ 26: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 26: [ RUN ] Simd4FloatingpointTest.transpose 26: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -26: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) +26: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) 26: 26: [----------] 1 test from Simd4VectorOperationsTest 26: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -68657,8 +68689,8 @@ 26: [ RUN ] Simd4MathTest.invsqrt 26: [ OK ] Simd4MathTest.invsqrt (0 ms) 26: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy -26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (1 ms) -26: [----------] 2 tests from Simd4MathTest (1 ms total) +26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) +26: [----------] 2 tests from Simd4MathTest (0 ms total) 26: 26: [----------] 41 tests from SimdScalarTest 26: [ RUN ] SimdScalarTest.load @@ -68743,7 +68775,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (0 ms total) +26: [----------] 41 tests from SimdScalarTest (9 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -68842,20 +68874,20 @@ 26: [----------] 37 tests from SimdScalarMathTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 277 tests from 22 test cases ran. (43 ms total) +26: [==========] 277 tests from 22 test cases ran. (84 ms total) 26: [ PASSED ] 277 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.84 sec +26/27 Test #26: SimdUnitTests .................... Passed 1.20 sec test 27 Start 27: CompatibilityHelpersTests 27: Test command: /build/gromacs-2019.1/build/openmpi/bin/compat-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/CompatibilityHelpersTests.xml" 27: Test timeout computed to be: 30 27: -------------------------------------------------------------------------- -27: [[13580,1],0]: A high-performance Open MPI point-to-point messaging module +27: [[54221,1],0]: A high-performance Open MPI point-to-point messaging module 27: was unable to find any relevant network interfaces: 27: 27: Module: OpenFabrics (openib) -27: Host: ionos15-amd64 +27: Host: i-capture-the-hostname 27: 27: Another transport will be used instead, although this may result in 27: lower performance. @@ -68898,17 +68930,17 @@ 27: [----------] Global test environment tear-down 27: [==========] 6 tests from 6 test cases ran. (0 ms total) 27: [ PASSED ] 6 tests. -27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.80 sec +27/27 Test #27: CompatibilityHelpersTests ........ Passed 1.20 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 22.40 sec*proc (27 tests) -MpiTest = 2.49 sec*proc (3 tests) -UnitTest = 22.40 sec*proc (27 tests) +GTest = 34.34 sec*proc (27 tests) +MpiTest = 3.53 sec*proc (3 tests) +UnitTest = 34.34 sec*proc (27 tests) -Total Test time (real) = 22.73 sec -/usr/bin/make -j16 -C build/openmpi-dp tests +Total Test time (real) = 35.23 sec +/usr/bin/make -j15 -C build/openmpi-dp tests make[1]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -68918,61 +68950,61 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -Scanning dependencies of target mdrunutility-test-shared -Scanning dependencies of target onlinehelp-test-shared +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build [ 1%] Built target lmfit_objlib +Scanning dependencies of target onlinehelp-test-shared +[ 2%] Built target tng_io_obj +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -Scanning dependencies of target gmock +[ 3%] Built target libgromacs_external +Scanning dependencies of target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp +Scanning dependencies of target gmock make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build -[ 2%] Built target libgromacs_external make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -cd /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc -[ 3%] Built target tng_io_obj make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. @@ -69036,207 +69068,209 @@ /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +Scanning dependencies of target testutils-mpi-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -Scanning dependencies of target hardware-test -Scanning dependencies of target testutils-mpi-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -Scanning dependencies of target testutils-test -Scanning dependencies of target gpu_utils-test -Scanning dependencies of target applied-forces-test +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp -Scanning dependencies of target mdlib-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +Scanning dependencies of target applied-forces-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -Scanning dependencies of target ewald-test +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp -Scanning dependencies of target domdec-test -Scanning dependencies of target math-test -Scanning dependencies of target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -Scanning dependencies of target commandline-test -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -Scanning dependencies of target mdrunutility-test -Scanning dependencies of target fft-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +Scanning dependencies of target fft-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build -Scanning dependencies of target onlinehelp-test +Scanning dependencies of target hardware-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp +Scanning dependencies of target domdec-test +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp +Scanning dependencies of target math-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +Scanning dependencies of target mdrunutility-test +Scanning dependencies of target ewald-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +Scanning dependencies of target mdrunutility-mpi-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 83%] Built target testutils-mpi-test -/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= -Scanning dependencies of target options-test +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 84%] Built target compat-test +/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 84%] Built target applied-forces-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend +Scanning dependencies of target options-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp Scanning dependencies of target random-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -[ 84%] Built target applied-forces-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +[ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm Scanning dependencies of target restraintpotential-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 84%] Built target fft-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +[ 85%] Built target fft-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm Scanning dependencies of target table-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 85%] Built target hardware-test +[ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -69245,19 +69279,19 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 85%] Built target domdec-test +[ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -[ 85%] Built target mdrunutility-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 85%] Built target domdec-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= @@ -69268,6 +69302,13 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 85%] Built target mdrunutility-mpi-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -69276,10 +69317,43 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 85%] Built target listed-forces-test +[ 86%] Built target utility-mpi-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 86%] Built target onlinehelp-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +[ 87%] Built target taskassignment-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test @@ -69287,20 +69361,13 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 85%] Built target restraintpotential-test +[ 88%] Built target fileio-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -69310,153 +69377,118 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -[ 85%] Built target onlinehelp-test +[ 89%] Built target testutils-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp Scanning dependencies of target simd-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 86%] Built target utility-mpi-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 87%] Built target pull-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp +[ 89%] Built target gpu_utils-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 88%] Built target taskassignment-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +[ 90%] Built target pull-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem 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/build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat 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../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c 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/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 89%] Built target testutils-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && 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/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 89%] Built target awh-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src 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-DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 90%] Built target fileio-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi 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-DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -[ 90%] Built target gpu_utils-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" 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/build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 91%] Built target random-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 92%] Built target mdlib-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +[ 90%] Built target table-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 90%] Built target awh-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 91%] Built target commandline-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 92%] Built target mdlib-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp [ 93%] Built target ewald-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 94%] Built target commandline-test +[ 94%] Built target random-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 94%] Built target math-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 95%] Built target options-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 97%] Built target simd-test +[ 96%] Built target simd-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 97%] Built target options-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -msse2 -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' @@ -69496,11 +69528,11 @@ 1: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/testutils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: -------------------------------------------------------------------------- -1: [[5295,1],0]: A high-performance Open MPI point-to-point messaging module +1: [[14366,1],0]: A high-performance Open MPI point-to-point messaging module 1: was unable to find any relevant network interfaces: 1: 1: Module: OpenFabrics (openib) -1: Host: ionos15-amd64 +1: Host: i-capture-the-hostname 1: 1: Another transport will be used instead, although this may result in 1: lower performance. @@ -69518,28 +69550,28 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (2 ms total) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) +1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData -1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData @@ -69547,7 +69579,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData -1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType @@ -69567,11 +69599,11 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -69579,7 +69611,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices @@ -69595,14 +69627,14 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (4 ms total) +1: [----------] 34 tests from ReferenceDataTest (7 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -69634,30 +69666,30 @@ 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (0 ms) +1: [ OK ] XvgTests.CreateFile (2 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (8 ms total) +1: [==========] 59 tests from 5 test cases ran. (14 ms total) 1: [ PASSED ] 59 tests. - 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.79 sec + 1/27 Test #1: TestUtilsUnitTests ............... Passed 1.23 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.openmpi "-np" "2" "/build/gromacs-2019.1/build/openmpi-dp/bin/testutils-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: -------------------------------------------------------------------------- -2: [[5355,1],0]: A high-performance Open MPI point-to-point messaging module +2: [[14542,1],1]: A high-performance Open MPI point-to-point messaging module 2: was unable to find any relevant network interfaces: 2: 2: Module: OpenFabrics (openib) -2: Host: ionos15-amd64 +2: Host: i-capture-the-hostname 2: 2: Another transport will be used instead, although this may result in 2: lower performance. @@ -69675,20 +69707,20 @@ 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (0 ms total) 2: [ PASSED ] 1 test. -2: [ionos15-amd64:3063154] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics -2: [ionos15-amd64:3063154] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.85 sec +2: [i-capture-the-hostname:1553800] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics +2: [i-capture-the-hostname:1553800] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 1.10 sec test 3 Start 3: MdlibUnitTest 3: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/mdlib-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: -------------------------------------------------------------------------- -3: [[5166,1],0]: A high-performance Open MPI point-to-point messaging module +3: [[14561,1],0]: A high-performance Open MPI point-to-point messaging module 3: was unable to find any relevant network interfaces: 3: 3: Module: OpenFabrics (openib) -3: Host: ionos15-amd64 +3: Host: i-capture-the-hostname 3: 3: Another transport will be used instead, although this may result in 3: lower performance. @@ -69705,12 +69737,12 @@ 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) +3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) -3: [----------] 3 tests from PrintEbin (0 ms total) +3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond @@ -69721,7 +69753,7 @@ 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) -3: [----------] 4 tests from ShakeTest (1 ms total) +3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks @@ -69768,8 +69800,8 @@ 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs -3: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) -3: [----------] 1 test from UpdateGroupsCog (0 ms total) +3: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) +3: [----------] 1 test from UpdateGroupsCog (1 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -69823,20 +69855,20 @@ 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (2 ms total) +3: [==========] 50 tests from 8 test cases ran. (3 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.83 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 1.07 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/applied-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: -------------------------------------------------------------------------- -4: [[5190,1],0]: A high-performance Open MPI point-to-point messaging module +4: [[15261,1],0]: A high-performance Open MPI point-to-point messaging module 4: was unable to find any relevant network interfaces: 4: 4: Module: OpenFabrics (openib) -4: Host: ionos15-amd64 +4: Host: i-capture-the-hostname 4: 4: Another transport will be used instead, although this may result in 4: lower performance. @@ -69858,18 +69890,18 @@ 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (0 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.78 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 1.11 sec test 5 Start 5: ListedForcesTest 5: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/listed-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: -------------------------------------------------------------------------- -5: [[5217,1],0]: A high-performance Open MPI point-to-point messaging module +5: [[15013,1],0]: A high-performance Open MPI point-to-point messaging module 5: was unable to find any relevant network interfaces: 5: 5: Module: OpenFabrics (openib) -5: Host: ionos15-amd64 +5: Host: i-capture-the-hostname 5: 5: Another transport will be used instead, although this may result in 5: lower performance. @@ -69895,7 +69927,7 @@ 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy -5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) +5: [ OK ] BondedTest.IfuncBondsPbcXy (1 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo @@ -69910,23 +69942,23 @@ 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) -5: [----------] 15 tests from BondedTest (0 ms total) +5: [----------] 15 tests from BondedTest (1 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 15 tests from 1 test case ran. (0 ms total) +5: [==========] 15 tests from 1 test case ran. (1 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.80 sec + 5/27 Test #5: ListedForcesTest ................. Passed 1.13 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/commandline-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: -------------------------------------------------------------------------- -6: [[6072,1],0]: A high-performance Open MPI point-to-point messaging module +6: [[13812,1],0]: A high-performance Open MPI point-to-point messaging module 6: was unable to find any relevant network interfaces: 6: 6: Module: OpenFabrics (openib) -6: Host: ionos15-amd64 +6: Host: i-capture-the-hostname 6: 6: Another transport will be used instead, although this may result in 6: lower performance. @@ -69947,18 +69979,18 @@ 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (1 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -69970,10 +70002,10 @@ 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -69989,7 +70021,7 @@ 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues -6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) +6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers @@ -70051,9 +70083,9 @@ 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified -6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) +6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) +6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile @@ -70065,20 +70097,20 @@ 6: [----------] 21 tests from ParseCommonArgsTest (1 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (4 ms total) +6: [==========] 55 tests from 6 test cases ran. (6 ms total) 6: [ PASSED ] 55 tests. - 6/27 Test #6: CommandLineUnitTests ............. Passed 0.82 sec + 6/27 Test #6: CommandLineUnitTests ............. Passed 1.02 sec test 7 Start 7: DomDecTests 7: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/domdec-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/DomDecTests.xml" 7: Test timeout computed to be: 30 7: -------------------------------------------------------------------------- -7: [[6129,1],0]: A high-performance Open MPI point-to-point messaging module +7: [[13430,1],0]: A high-performance Open MPI point-to-point messaging module 7: was unable to find any relevant network interfaces: 7: 7: Module: OpenFabrics (openib) -7: Host: ionos15-amd64 +7: Host: i-capture-the-hostname 7: 7: Another transport will be used instead, although this may result in 7: lower performance. @@ -70115,18 +70147,18 @@ 7: [----------] Global test environment tear-down 7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.79 sec + 7/27 Test #7: DomDecTests ...................... Passed 1.12 sec test 8 Start 8: EwaldUnitTests 8: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/ewald-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/EwaldUnitTests.xml" 8: Test timeout computed to be: 30 8: -------------------------------------------------------------------------- -8: [[5891,1],0]: A high-performance Open MPI point-to-point messaging module +8: [[13535,1],0]: A high-performance Open MPI point-to-point messaging module 8: was unable to find any relevant network interfaces: 8: 8: Module: OpenFabrics (openib) -8: Host: ionos15-amd64 +8: Host: i-capture-the-hostname 8: 8: Another transport will be used instead, although this may result in 8: lower performance. @@ -70138,87 +70170,87 @@ 8: [----------] Global test environment set-up. 8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (4 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (6 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (10 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (12 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (11 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (13 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (7 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (14 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (9 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (4 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (6 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (6 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (7 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (82 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (5 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (146 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 @@ -70228,21 +70260,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 @@ -70252,33 +70284,33 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 @@ -70288,23 +70320,23 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 @@ -70326,23 +70358,23 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 @@ -70354,9 +70386,9 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 @@ -70370,7 +70402,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 @@ -70380,11 +70412,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 @@ -70394,7 +70426,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 @@ -70404,21 +70436,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 @@ -70432,31 +70464,31 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (4 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 @@ -70464,7 +70496,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 @@ -70478,53 +70510,53 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (9 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (38 ms total) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) +8: [----------] 144 tests from SaneInput/PmeGatherTest (75 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (10 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (10 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (16 ms total) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) +8: [----------] 16 tests from SaneInput/PmeSolveTest (42 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 @@ -70532,105 +70564,105 @@ 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (6 ms total) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (8 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (10 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (3 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (3 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (10 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (25 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (5 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (10 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (10 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (15 ms total) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (10 ms) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (53 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (9 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (6 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (9 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (14 ms total) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (47 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 @@ -70638,63 +70670,63 @@ 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (18 ms total) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (27 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (42 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (11 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (76 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (290 ms total) +8: [==========] 257 tests from 10 test cases ran. (663 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 1.12 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 1.81 sec test 9 Start 9: FFTUnitTests 9: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/fft-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/FFTUnitTests.xml" 9: Test timeout computed to be: 30 9: -------------------------------------------------------------------------- -9: [[5953,1],0]: A high-performance Open MPI point-to-point messaging module +9: [[14285,1],0]: A high-performance Open MPI point-to-point messaging module 9: was unable to find any relevant network interfaces: 9: 9: Module: OpenFabrics (openib) -9: Host: ionos15-amd64 +9: Host: i-capture-the-hostname 9: 9: Another transport will be used instead, although this may result in 9: lower performance. @@ -70706,59 +70738,59 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (17 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (21 ms) -9: [----------] 2 tests from ManyFFTTest (30 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (45 ms) +9: [----------] 2 tests from ManyFFTTest (62 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (6 ms) -9: [----------] 1 test from FFTTest (6 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (11 ms) +9: [----------] 1 test from FFTTest (11 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -9: [----------] 1 test from FFFTest3D (2 ms total) +9: [ OK ] FFFTest3D.Real5_6_9 (4 ms) +9: [----------] 1 test from FFFTest3D (4 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (4 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (10 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (5 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (12 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (26 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (18 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (41 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (36 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (86 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (79 ms total) +9: [==========] 14 tests from 4 test cases ran. (163 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.88 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 1.35 sec test 10 Start 10: GpuUtilsUnitTests 10: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/gpu_utils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/GpuUtilsUnitTests.xml" 10: Test timeout computed to be: 30 10: -------------------------------------------------------------------------- -10: [[5811,1],0]: A high-performance Open MPI point-to-point messaging module +10: [[14044,1],0]: A high-performance Open MPI point-to-point messaging module 10: was unable to find any relevant network interfaces: 10: 10: Module: OpenFabrics (openib) -10: Host: ionos15-amd64 +10: Host: i-capture-the-hostname 10: 10: Another transport will be used instead, although this may result in 10: lower performance. @@ -70872,8 +70904,8 @@ 10: [ RUN ] HostAllocatorTestNoMem/3.Swap 10: [ OK ] HostAllocatorTestNoMem/3.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/3.Comparison -10: [ OK ] HostAllocatorTestNoMem/3.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/3 (0 ms total) +10: [ OK ] HostAllocatorTestNoMem/3.Comparison (1 ms) +10: [----------] 5 tests from HostAllocatorTestNoMem/3 (1 ms total) 10: 10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0, where TypeParam = int 10: [ RUN ] HostAllocatorTestNoMemCopyable/0.CopyAssignment @@ -70910,7 +70942,7 @@ 10: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.Move 10: [ OK ] AllocatorTest/0.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/0 (1 ms total) +10: [----------] 4 tests from AllocatorTest/0 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -70927,12 +70959,12 @@ 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (0 ms total) +10: [----------] 4 tests from AllocatorTest/2 (1 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -70946,20 +70978,20 @@ 10: [----------] 4 tests from AllocatorTest/3 (0 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 60 tests from 19 test cases ran. (1 ms total) +10: [==========] 60 tests from 19 test cases ran. (2 ms total) 10: [ PASSED ] 60 tests. -10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.79 sec +10/27 Test #10: GpuUtilsUnitTests ................ Passed 1.09 sec test 11 Start 11: HardwareUnitTests 11: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/hardware-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/HardwareUnitTests.xml" 11: Test timeout computed to be: 30 11: -------------------------------------------------------------------------- -11: [[5799,1],0]: A high-performance Open MPI point-to-point messaging module +11: [[12323,1],0]: A high-performance Open MPI point-to-point messaging module 11: was unable to find any relevant network interfaces: 11: 11: Module: OpenFabrics (openib) -11: Host: ionos15-amd64 +11: Host: i-capture-the-hostname 11: 11: Another transport will be used instead, although this may result in 11: lower performance. @@ -70971,30 +71003,30 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (36 ms) +11: [ OK ] HardwareTopologyTest.Execute (168 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (38 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (126 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (27 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (132 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (31 ms) -11: [----------] 4 tests from HardwareTopologyTest (132 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (112 ms) +11: [----------] 4 tests from HardwareTopologyTest (539 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (132 ms total) +11: [==========] 4 tests from 1 test case ran. (547 ms total) 11: [ PASSED ] 4 tests. -11/27 Test #11: HardwareUnitTests ................ Passed 0.93 sec +11/27 Test #11: HardwareUnitTests ................ Passed 1.73 sec test 12 Start 12: MathUnitTests 12: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/math-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MathUnitTests.xml" 12: Test timeout computed to be: 30 12: -------------------------------------------------------------------------- -12: [[5632,1],0]: A high-performance Open MPI point-to-point messaging module +12: [[13299,1],0]: A high-performance Open MPI point-to-point messaging module 12: was unable to find any relevant network interfaces: 12: 12: Module: OpenFabrics (openib) -12: Host: ionos15-amd64 +12: Host: i-capture-the-hostname 12: 12: Another transport will be used instead, although this may result in 12: lower performance. @@ -71076,11 +71108,11 @@ 12: [ RUN ] FunctionTest.SixthrootDouble 12: [ OK ] FunctionTest.SixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.SixthrootInteger -12: [ OK ] FunctionTest.SixthrootInteger (0 ms) +12: [ OK ] FunctionTest.SixthrootInteger (1 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat 12: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootDouble -12: [ OK ] FunctionTest.InvsixthrootDouble (1 ms) +12: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootInteger 12: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.Powers @@ -71093,7 +71125,7 @@ 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -12: [----------] 21 tests from FunctionTest (1 ms total) +12: [----------] 21 tests from FunctionTest (2 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -71286,23 +71318,23 @@ 12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (1 ms total) +12: [----------] 33 tests from RVecTest (5 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (2 ms total) +12: [==========] 112 tests from 20 test cases ran. (8 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.80 sec +12/27 Test #12: MathUnitTests .................... Passed 1.21 sec test 13 Start 13: MdrunUtilityUnitTests 13: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/mdrunutility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MdrunUtilityUnitTests.xml" 13: Test timeout computed to be: 30 13: -------------------------------------------------------------------------- -13: [[5715,1],0]: A high-performance Open MPI point-to-point messaging module +13: [[12816,1],0]: A high-performance Open MPI point-to-point messaging module 13: was unable to find any relevant network interfaces: 13: 13: Module: OpenFabrics (openib) -13: Host: ionos15-amd64 +13: Host: i-capture-the-hostname 13: 13: Another transport will be used instead, although this may result in 13: lower performance. @@ -71322,9 +71354,9 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -71332,40 +71364,40 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 13: NOTE: Affinity setting failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (5 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (3 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +13: [----------] 17 tests from ThreadAffinityTest (9 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (3 ms total) +13: [==========] 17 tests from 1 test case ran. (9 ms total) 13: [ PASSED ] 17 tests. -13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.79 sec +13/27 Test #13: MdrunUtilityUnitTests ............ Passed 1.15 sec test 14 Start 14: MdrunUtilityMpiUnitTests 14: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi-dp/bin/mdrunutility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 14: Test timeout computed to be: 30 14: -------------------------------------------------------------------------- -14: [[5707,1],1]: A high-performance Open MPI point-to-point messaging module +14: [[19813,1],0]: A high-performance Open MPI point-to-point messaging module 14: was unable to find any relevant network interfaces: 14: 14: Module: OpenFabrics (openib) -14: Host: ionos15-amd64 +14: Host: i-capture-the-hostname 14: 14: Another transport will be used instead, although this may result in 14: lower performance. @@ -71379,51 +71411,51 @@ 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode 14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (2 ms total) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (3 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (41 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (68 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (12 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (3 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (139 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (5 ms total) +14: [==========] 13 tests from 2 test cases ran. (142 ms total) 14: [ PASSED ] 13 tests. -14: [ionos15-amd64:3063762] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -14: [ionos15-amd64:3063762] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.83 sec +14: [i-capture-the-hostname:1556515] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +14: [i-capture-the-hostname:1556515] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.46 sec test 15 Start 15: OnlineHelpUnitTests 15: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/onlinehelp-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/OnlineHelpUnitTests.xml" 15: Test timeout computed to be: 30 15: -------------------------------------------------------------------------- -15: [[5757,1],0]: A high-performance Open MPI point-to-point messaging module +15: [[19552,1],0]: A high-performance Open MPI point-to-point messaging module 15: was unable to find any relevant network interfaces: 15: 15: Module: OpenFabrics (openib) -15: Host: ionos15-amd64 +15: Host: i-capture-the-hostname 15: 15: Another transport will be used instead, although this may result in 15: lower performance. @@ -71455,7 +71487,7 @@ 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics 15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -15: [----------] 3 tests from HelpManagerTest (0 ms total) +15: [----------] 3 tests from HelpManagerTest (1 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -71472,13 +71504,13 @@ 15: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 15: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralText -15: [ OK ] HelpWriterContextTest.FormatsLiteralText (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList -15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsBulletList (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable @@ -71490,20 +71522,20 @@ 15: [----------] 11 tests from HelpWriterContextTest (1 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (1 ms total) +15: [==========] 22 tests from 4 test cases ran. (2 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.79 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 1.15 sec test 16 Start 16: OptionsUnitTests 16: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/options-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/OptionsUnitTests.xml" 16: Test timeout computed to be: 30 16: -------------------------------------------------------------------------- -16: [[5749,1],0]: A high-performance Open MPI point-to-point messaging module +16: [[19618,1],0]: A high-performance Open MPI point-to-point messaging module 16: was unable to find any relevant network interfaces: 16: 16: Module: OpenFabrics (openib) -16: Host: ionos15-amd64 +16: Host: i-capture-the-hostname 16: 16: Another transport will be used instead, although this may result in 16: lower performance. @@ -71521,10 +71553,10 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -16: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) +16: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 16: 16: [----------] 8 tests from FileNameOptionTest 16: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -71555,7 +71587,7 @@ 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (1 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified @@ -71576,7 +71608,7 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -71602,7 +71634,7 @@ 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -16: [----------] 9 tests from OptionsAssignerTest (0 ms total) +16: [----------] 9 tests from OptionsAssignerTest (1 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest 16: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -71709,8 +71741,8 @@ 16: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections -16: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -16: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) +16: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (1 ms) +16: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 16: 16: [----------] 1 test from TimeUnitManagerTest 16: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -71737,8 +71769,8 @@ 16: 16: [----------] 1 test from TreeValueSupportAssignErrorTest 16: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue -16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (1 ms) -16: [----------] 1 test from TreeValueSupportAssignErrorTest (1 ms total) +16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) +16: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 16: 16: [----------] 5 tests from TreeValueSupportCheckTest 16: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty @@ -71765,8 +71797,8 @@ 16: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues -16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -16: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) +16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (2 ms) +16: [----------] 6 tests from TreeValueSupportAdjustTest (2 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption @@ -71785,23 +71817,23 @@ 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption 16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -16: [----------] 8 tests from TreeValueSupportTest (0 ms total) +16: [----------] 8 tests from TreeValueSupportTest (1 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (2 ms total) +16: [==========] 110 tests from 18 test cases ran. (6 ms total) 16: [ PASSED ] 110 tests. -16/27 Test #16: OptionsUnitTests ................. Passed 0.78 sec +16/27 Test #16: OptionsUnitTests ................. Passed 1.23 sec test 17 Start 17: RandomUnitTests 17: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/random-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/RandomUnitTests.xml" 17: Test timeout computed to be: 30 17: -------------------------------------------------------------------------- -17: [[5741,1],0]: A high-performance Open MPI point-to-point messaging module +17: [[20396,1],0]: A high-performance Open MPI point-to-point messaging module 17: was unable to find any relevant network interfaces: 17: 17: Module: OpenFabrics (openib) -17: Host: ionos15-amd64 +17: Host: i-capture-the-hostname 17: 17: Another transport will be used instead, although this may result in 17: lower performance. @@ -71835,14 +71867,14 @@ 17: 17: [----------] 4 tests from NormalDistributionTest 17: [ RUN ] NormalDistributionTest.Output -17: [ OK ] NormalDistributionTest.Output (0 ms) +17: [ OK ] NormalDistributionTest.Output (1 ms) 17: [ RUN ] NormalDistributionTest.Logical 17: [ OK ] NormalDistributionTest.Logical (0 ms) 17: [ RUN ] NormalDistributionTest.Reset 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (0 ms total) +17: [----------] 4 tests from NormalDistributionTest (1 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -71866,8 +71898,8 @@ 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical @@ -71882,7 +71914,7 @@ 17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output @@ -71914,7 +71946,7 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 @@ -71922,28 +71954,28 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) +17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (2 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (2 ms total) +17: [==========] 44 tests from 10 test cases ran. (5 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.80 sec +17/27 Test #17: RandomUnitTests .................. Passed 1.15 sec test 18 Start 18: RestraintTests 18: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/restraintpotential-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/RestraintTests.xml" 18: Test timeout computed to be: 30 18: -------------------------------------------------------------------------- -18: [[5733,1],0]: A high-performance Open MPI point-to-point messaging module +18: [[18814,1],0]: A high-performance Open MPI point-to-point messaging module 18: was unable to find any relevant network interfaces: 18: 18: Module: OpenFabrics (openib) -18: Host: ionos15-amd64 +18: Host: i-capture-the-hostname 18: 18: Another transport will be used instead, although this may result in 18: lower performance. @@ -71961,18 +71993,18 @@ 18: [----------] Global test environment tear-down 18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. -18/27 Test #18: RestraintTests ................... Passed 0.79 sec +18/27 Test #18: RestraintTests ................... Passed 1.06 sec test 19 Start 19: TableUnitTests 19: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/table-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TableUnitTests.xml" 19: Test timeout computed to be: 30 19: -------------------------------------------------------------------------- -19: [[27037,1],0]: A high-performance Open MPI point-to-point messaging module +19: [[18878,1],0]: A high-performance Open MPI point-to-point messaging module 19: was unable to find any relevant network interfaces: 19: 19: Module: OpenFabrics (openib) -19: Host: ionos15-amd64 +19: Host: i-capture-the-hostname 19: 19: Another transport will be used instead, although this may result in 19: lower performance. @@ -71986,63 +72018,63 @@ 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) 19: [ RUN ] SplineTableTest/0.Sinc -19: [ OK ] SplineTableTest/0.Sinc (0 ms) +19: [ OK ] SplineTableTest/0.Sinc (4 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (24 ms) +19: [ OK ] SplineTableTest/0.LJ12 (49 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection -19: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) +19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (44 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (63 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (45 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (65 ms) 19: [ RUN ] SplineTableTest/0.Simd -19: [ OK ] SplineTableTest/0.Simd (11 ms) +19: [ OK ] SplineTableTest/0.Simd (13 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (41 ms) -19: [----------] 10 tests from SplineTableTest/0 (169 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (52 ms) +19: [----------] 10 tests from SplineTableTest/0 (251 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (2 ms) 19: [ RUN ] SplineTableTest/1.Sinc -19: [ OK ] SplineTableTest/1.Sinc (1 ms) +19: [ OK ] SplineTableTest/1.Sinc (2 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (56 ms) +19: [ OK ] SplineTableTest/1.LJ12 (78 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection 19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) +19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (127 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (149 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (121 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (153 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (25 ms) +19: [ OK ] SplineTableTest/1.Simd (47 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (106 ms) -19: [----------] 10 tests from SplineTableTest/1 (444 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (201 ms) +19: [----------] 10 tests from SplineTableTest/1 (635 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (613 ms total) +19: [==========] 20 tests from 2 test cases ran. (886 ms total) 19: [ PASSED ] 20 tests. -19/27 Test #19: TableUnitTests ................... Passed 1.39 sec +19/27 Test #19: TableUnitTests ................... Passed 2.03 sec test 20 Start 20: TaskAssignmentUnitTests 20: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/taskassignment-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TaskAssignmentUnitTests.xml" 20: Test timeout computed to be: 30 20: -------------------------------------------------------------------------- -20: [[27029,1],0]: A high-performance Open MPI point-to-point messaging module +20: [[19426,1],0]: A high-performance Open MPI point-to-point messaging module 20: was unable to find any relevant network interfaces: 20: 20: Module: OpenFabrics (openib) -20: Host: ionos15-amd64 +20: Host: i-capture-the-hostname 20: 20: Another transport will be used instead, although this may result in 20: lower performance. @@ -72058,24 +72090,24 @@ 20: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 20: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow -20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) +20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) 20: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 3 tests from 1 test case ran. (1 ms total) 20: [ PASSED ] 3 tests. -20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.79 sec +20/27 Test #20: TaskAssignmentUnitTests .......... Passed 1.14 sec test 21 Start 21: UtilityUnitTests 21: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/utility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/UtilityUnitTests.xml" 21: Test timeout computed to be: 30 21: -------------------------------------------------------------------------- -21: [[27021,1],0]: A high-performance Open MPI point-to-point messaging module +21: [[19182,1],0]: A high-performance Open MPI point-to-point messaging module 21: was unable to find any relevant network interfaces: 21: 21: Module: OpenFabrics (openib) -21: Host: ionos15-amd64 +21: Host: i-capture-the-hostname 21: 21: Another transport will be used instead, although this may result in 21: lower performance. @@ -72096,7 +72128,7 @@ 21: [ OK ] AllocatorTest/0.Move (0 ms) 21: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/0 (0 ms total) +21: [----------] 5 tests from AllocatorTest/0 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -72141,7 +72173,7 @@ 21: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.Move @@ -72156,12 +72188,12 @@ 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment -21: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (4 ms) 21: [ RUN ] AllocatorTest/5.Move 21: [ OK ] AllocatorTest/5.Move (0 ms) 21: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/5 (0 ms total) +21: [----------] 5 tests from AllocatorTest/5 (5 ms total) 21: 21: [----------] 1 test from AllocatorUntypedTest 21: [ RUN ] AllocatorUntypedTest.Comparison @@ -72302,7 +72334,7 @@ 21: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/5 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/5 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks @@ -72470,7 +72502,7 @@ 21: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/13 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks @@ -72533,7 +72565,7 @@ 21: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/16 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/16 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks @@ -72602,12 +72634,12 @@ 21: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 21: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject -21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (1 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -21: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +21: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest 21: [ RUN ] TreeValueTransformTest.SimpleTransforms @@ -72619,22 +72651,22 @@ 21: [ RUN ] TreeValueTransformTest.ObjectFromString 21: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -21: [----------] 6 tests from TreeValueTransformTest (1 ms total) +21: [----------] 6 tests from TreeValueTransformTest (0 ms total) 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError -21: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) -21: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) +21: [ OK ] TreeValueTransformErrorTest.ConversionError (3 ms) +21: [----------] 1 test from TreeValueTransformErrorTest (3 ms total) 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported 21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported -21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) -21: [----------] 2 tests from RegexBasicTest (0 ms total) +21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (1 ms) +21: [----------] 2 tests from RegexBasicTest (1 ms total) 21: 21: [----------] 5 tests from LoggerTest 21: [ RUN ] LoggerTest.EmptyLoggerWorks @@ -72662,12 +72694,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (2 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (2 ms total) +21: [----------] 3 tests from MutexTaskTest (1 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -72691,7 +72723,7 @@ 21: [ RUN ] StringUtilityTest.StartsWith 21: [ OK ] StringUtilityTest.StartsWith (0 ms) 21: [ RUN ] StringUtilityTest.EndsWith -21: [ OK ] StringUtilityTest.EndsWith (1 ms) +21: [ OK ] StringUtilityTest.EndsWith (0 ms) 21: [ RUN ] StringUtilityTest.StripSuffixIfPresent 21: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 21: [ RUN ] StringUtilityTest.StripString @@ -72702,7 +72734,7 @@ 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) -21: [----------] 7 tests from StringUtilityTest (1 ms total) +21: [----------] 7 tests from StringUtilityTest (0 ms total) 21: 21: [----------] 2 tests from FormatStringTest 21: [ RUN ] FormatStringTest.HandlesBasicFormatting @@ -72824,7 +72856,7 @@ 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) +21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 21: 21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -72855,24 +72887,24 @@ 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (1 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (7 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (8 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (18 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -72892,20 +72924,20 @@ 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (8 ms total) +21: [==========] 325 tests from 52 test cases ran. (35 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.81 sec +21/27 Test #21: UtilityUnitTests ................. Passed 1.15 sec test 22 Start 22: UtilityMpiUnitTests 22: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi-dp/bin/utility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/UtilityMpiUnitTests.xml" 22: Test timeout computed to be: 30 22: -------------------------------------------------------------------------- -22: [[27060,1],1]: A high-performance Open MPI point-to-point messaging module +22: [[17888,1],0]: A high-performance Open MPI point-to-point messaging module 22: was unable to find any relevant network interfaces: 22: 22: Module: OpenFabrics (openib) -22: Host: ionos15-amd64 +22: Host: i-capture-the-hostname 22: 22: Another transport will be used instead, although this may result in 22: lower performance. @@ -72917,28 +72949,28 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (40 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier 22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (45 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (1 ms total) +22: [==========] 2 tests from 1 test case ran. (46 ms total) 22: [ PASSED ] 2 tests. -22: [ionos15-amd64:3063853] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -22: [ionos15-amd64:3063853] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.83 sec +22: [i-capture-the-hostname:1558694] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +22: [i-capture-the-hostname:1558694] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +22/27 Test #22: UtilityMpiUnitTests .............. Passed 1.23 sec test 23 Start 23: FileIOTests 23: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/fileio-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/FileIOTests.xml" 23: Test timeout computed to be: 30 23: -------------------------------------------------------------------------- -23: [[27046,1],0]: A high-performance Open MPI point-to-point messaging module +23: [[17622,1],0]: A high-performance Open MPI point-to-point messaging module 23: was unable to find any relevant network interfaces: 23: 23: Module: OpenFabrics (openib) -23: Host: ionos15-amd64 +23: Host: i-capture-the-hostname 23: 23: Another transport will be used instead, although this may result in 23: lower performance. @@ -73008,37 +73040,37 @@ 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile -23: [ OK ] TngTest.CanOpenTngFile (0 ms) +23: [ OK ] TngTest.CanOpenTngFile (1 ms) 23: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 23: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -23: [----------] 2 tests from TngTest (0 ms total) +23: [----------] 2 tests from TngTest (1 ms total) 23: 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (3 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (3 ms total) +23: [==========] 17 tests from 4 test cases ran. (5 ms total) 23: [ PASSED ] 17 tests. -23/27 Test #23: FileIOTests ...................... Passed 0.79 sec +23/27 Test #23: FileIOTests ...................... Passed 1.10 sec test 24 Start 24: PullTest 24: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/pull-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/PullTest.xml" 24: Test timeout computed to be: 30 24: -------------------------------------------------------------------------- -24: [[27102,1],0]: A high-performance Open MPI point-to-point messaging module +24: [[18180,1],0]: A high-performance Open MPI point-to-point messaging module 24: was unable to find any relevant network interfaces: 24: 24: Module: OpenFabrics (openib) -24: Host: ionos15-amd64 +24: Host: i-capture-the-hostname 24: 24: Another transport will be used instead, although this may result in 24: lower performance. @@ -73064,18 +73096,18 @@ 24: [----------] Global test environment tear-down 24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. -24/27 Test #24: PullTest ......................... Passed 0.78 sec +24/27 Test #24: PullTest ......................... Passed 1.08 sec test 25 Start 25: AwhTest 25: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/awh-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/AwhTest.xml" 25: Test timeout computed to be: 30 25: -------------------------------------------------------------------------- -25: [[27094,1],0]: A high-performance Open MPI point-to-point messaging module +25: [[17994,1],0]: A high-performance Open MPI point-to-point messaging module 25: was unable to find any relevant network interfaces: 25: 25: Module: OpenFabrics (openib) -25: Host: ionos15-amd64 +25: Host: i-capture-the-hostname 25: 25: Another transport will be used instead, although this may result in 25: lower performance. @@ -73087,13 +73119,13 @@ 25: [----------] Global test environment set-up. 25: [----------] 1 test from BiasTest 25: [ RUN ] BiasTest.DetectsCovering -25: [ OK ] BiasTest.DetectsCovering (0 ms) -25: [----------] 1 test from BiasTest (0 ms total) +25: [ OK ] BiasTest.DetectsCovering (1 ms) +25: [----------] 1 test from BiasTest (1 ms total) 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (1 ms) -25: [----------] 1 test from gridTest (1 ms total) +25: [ OK ] gridTest.neighborhood (2 ms) +25: [----------] 1 test from gridTest (2 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 @@ -73103,7 +73135,7 @@ 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 @@ -73112,7 +73144,7 @@ 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -25: [----------] 8 tests from WithParameters/BiasTest (3 ms total) +25: [----------] 8 tests from WithParameters/BiasTest (4 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -73122,20 +73154,20 @@ 25: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (4 ms total) +25: [==========] 12 tests from 4 test cases ran. (7 ms total) 25: [ PASSED ] 12 tests. -25/27 Test #25: AwhTest .......................... Passed 0.79 sec +25/27 Test #25: AwhTest .......................... Passed 1.06 sec test 26 Start 26: SimdUnitTests 26: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/simd-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/SimdUnitTests.xml" 26: Test timeout computed to be: 30 26: -------------------------------------------------------------------------- -26: [[27086,1],0]: A high-performance Open MPI point-to-point messaging module +26: [[18093,1],0]: A high-performance Open MPI point-to-point messaging module 26: was unable to find any relevant network interfaces: 26: 26: Module: OpenFabrics (openib) -26: Host: ionos15-amd64 +26: Host: i-capture-the-hostname 26: 26: Another transport will be used instead, although this may result in 26: lower performance. @@ -73250,7 +73282,7 @@ 26: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 26: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 26: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -26: [----------] 42 tests from SimdFloatingpointTest (0 ms total) +26: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 26: 26: [----------] 13 tests from SimdFloatingpointUtilTest 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -73294,39 +73326,39 @@ 26: [ RUN ] SimdMathTest.copysign 26: [ OK ] SimdMathTest.copysign (0 ms) 26: [ RUN ] SimdMathTest.invsqrt -26: [ OK ] SimdMathTest.invsqrt (1 ms) +26: [ OK ] SimdMathTest.invsqrt (0 ms) 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair -26: [ OK ] SimdMathTest.invsqrtPair (0 ms) +26: [ OK ] SimdMathTest.invsqrtPair (1 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (1 ms) +26: [ OK ] SimdMathTest.sqrt (2 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe 26: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (1 ms) +26: [ OK ] SimdMathTest.inv (2 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (1 ms) +26: [ OK ] SimdMathTest.log (2 ms) 26: [ RUN ] SimdMathTest.exp2 -26: [ OK ] SimdMathTest.exp2 (6 ms) +26: [ OK ] SimdMathTest.exp2 (10 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe 26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 26: [ RUN ] SimdMathTest.exp -26: [ OK ] SimdMathTest.exp (5 ms) +26: [ OK ] SimdMathTest.exp (7 ms) 26: [ RUN ] SimdMathTest.expUnsafe 26: [ OK ] SimdMathTest.expUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erf -26: [ OK ] SimdMathTest.erf (1 ms) +26: [ OK ] SimdMathTest.erf (4 ms) 26: [ RUN ] SimdMathTest.erfc -26: [ OK ] SimdMathTest.erfc (1 ms) +26: [ OK ] SimdMathTest.erfc (2 ms) 26: [ RUN ] SimdMathTest.sin -26: [ OK ] SimdMathTest.sin (1 ms) +26: [ OK ] SimdMathTest.sin (2 ms) 26: [ RUN ] SimdMathTest.cos -26: [ OK ] SimdMathTest.cos (2 ms) +26: [ OK ] SimdMathTest.cos (3 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (4 ms) +26: [ OK ] SimdMathTest.tan (6 ms) 26: [ RUN ] SimdMathTest.asin 26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos @@ -73336,9 +73368,9 @@ 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection -26: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) +26: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy @@ -73346,17 +73378,17 @@ 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy 26: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy 26: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy -26: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.logSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy -26: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracy (5 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy -26: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.expSingleAccuracy (3 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy @@ -73364,24 +73396,24 @@ 26: [ RUN ] SimdMathTest.erfcSingleAccuracy 26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy -26: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (4 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (5 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy -26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.acosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (5 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -26: [----------] 45 tests from SimdMathTest (53 ms total) +26: [----------] 45 tests from SimdMathTest (92 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -73595,7 +73627,7 @@ 26: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 26: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 26: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) -26: [----------] 8 tests from SimdScalarUtilTest (0 ms total) +26: [----------] 8 tests from SimdScalarUtilTest (1 ms total) 26: 26: [----------] 37 tests from SimdScalarMathTest 26: [ RUN ] SimdScalarMathTest.copysign @@ -73675,20 +73707,20 @@ 26: [----------] 37 tests from SimdScalarMathTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 236 tests from 19 test cases ran. (53 ms total) +26: [==========] 236 tests from 19 test cases ran. (94 ms total) 26: [ PASSED ] 236 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.84 sec +26/27 Test #26: SimdUnitTests .................... Passed 1.09 sec test 27 Start 27: CompatibilityHelpersTests 27: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/compat-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/CompatibilityHelpersTests.xml" 27: Test timeout computed to be: 30 27: -------------------------------------------------------------------------- -27: [[27078,1],0]: A high-performance Open MPI point-to-point messaging module +27: [[16792,1],0]: A high-performance Open MPI point-to-point messaging module 27: was unable to find any relevant network interfaces: 27: 27: Module: OpenFabrics (openib) -27: Host: ionos15-amd64 +27: Host: i-capture-the-hostname 27: 27: Another transport will be used instead, although this may result in 27: lower performance. @@ -73731,16 +73763,16 @@ 27: [----------] Global test environment tear-down 27: [==========] 6 tests from 6 test cases ran. (0 ms total) 27: [ PASSED ] 6 tests. -27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.78 sec +27/27 Test #27: CompatibilityHelpersTests ........ Passed 1.20 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 22.78 sec*proc (27 tests) -MpiTest = 2.52 sec*proc (3 tests) -UnitTest = 22.78 sec*proc (27 tests) +GTest = 33.27 sec*proc (27 tests) +MpiTest = 3.79 sec*proc (3 tests) +UnitTest = 33.27 sec*proc (27 tests) -Total Test time (real) = 23.08 sec +Total Test time (real) = 34.35 sec touch build-openmpi dh_testdir # Build speedy, stripped-down version just for documentation generation. @@ -73955,7 +73987,7 @@ -- Configuring done -- Generating done -- Build files have been written to: /build/gromacs-2019.1/build/documentation -/usr/bin/make -j16 gmx -C build/documentation +/usr/bin/make -j15 gmx -C build/documentation make[1]: Entering directory '/build/gromacs-2019.1/build/documentation' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 gmx @@ -73965,141 +73997,141 @@ /usr/bin/make -f CMakeFiles/Makefile2 src/programs/CMakeFiles/gmx.dir/all make[3]: Entering directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +Scanning dependencies of target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -Scanning dependencies of target mdrun_objlib +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Scanning dependencies of target lmfit_objlib make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp -Scanning dependencies of target view_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -Scanning dependencies of target tng_io_zlib -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /build/gromacs-2019.1/src/programs/view/view.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/adler32.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/adler32.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/compress.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/crc32.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/deflate.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inffast.c +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inflate.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inftrees.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/trees.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/uncompr.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/zutil.c make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -Scanning dependencies of target libgromacs_external -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c -Scanning dependencies of target libgromacs_generated -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c +Scanning dependencies of target tng_io_zlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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'/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c +Scanning dependencies of target view_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /build/gromacs-2019.1/src/programs/view/view.cpp +Scanning dependencies of target libgromacs_generated +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/compress.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/crc32.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/deflate.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inffast.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inflate.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inftrees.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/trees.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/uncompr.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/zutil.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp [ 0%] Built target view_objlib +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +[ 0%] Built target lmfit_objlib +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' [ 0%] Built target tng_io_zlib -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp -[ 0%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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/build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/barrier.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/p2p_send_recv.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/bcast.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/p2p_wait.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/collective.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/profile.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem 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/build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/reduce.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong 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/build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 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/usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_init.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o 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-ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/type.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/scan.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/numa_malloc.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/once.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp -[ 0%] Built target mdrun_objlib -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp @@ -74115,6 +74147,8 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp @@ -74122,10 +74156,8 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp -[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp @@ -74162,6 +74194,11 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -74174,11 +74211,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp @@ -74199,10 +74231,10 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp @@ -75017,7 +75049,7 @@ make[2]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[1]: Leaving directory '/build/gromacs-2019.1/build/documentation' # Generate PDF -/usr/bin/make -j16 manual -C build/documentation +/usr/bin/make -j15 manual -C build/documentation make[1]: Entering directory '/build/gromacs-2019.1/build/documentation' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 manual @@ -75043,8 +75075,8 @@ make[1]: Leaving directory '/build/gromacs-2019.1/build/documentation' # Generate HTML # This sometimes seems to work the *second* time? Still trying to trace it down. -/usr/bin/make -j16 webpage -C build/documentation || \ -(echo "===== Failed to build documentation, retrying." ; /usr/bin/make -j16 webpage -C build/documentation ) +/usr/bin/make -j15 webpage -C build/documentation || \ +(echo "===== Failed to build documentation, retrying." ; /usr/bin/make -j15 webpage -C build/documentation ) make[1]: Entering directory '/build/gromacs-2019.1/build/documentation' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 webpage @@ -75054,114 +75086,132 @@ /usr/bin/make -f CMakeFiles/Makefile2 docs/CMakeFiles/webpage.dir/all make[3]: Entering directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/DependInfo.cmake --color= /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-version.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +Scanning dependencies of target doxygen-version +Scanning dependencies of target doxygen-source-timestamp +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/doxygen/doxygen-source-timestamp.txt +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2019.1/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2019.1/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/gromacs-2019.1/cmake/gmxConfigureVersionInfo.cmake Scanning dependencies of target sphinx-image-conversion make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build -Scanning dependencies of target doxygen-source-timestamp +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-image-conversion-timestamp.txt make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -Scanning dependencies of target sphinx-input-rst +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch Doxyfile-version +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +[ 0%] Built target doxygen-source-timestamp make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/doxygen/doxygen-source-timestamp.txt +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -Scanning dependencies of target doxygen-version +[ 0%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +[ 0%] Built target sphinx-image-conversion +[ 0%] Built target lmfit_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 0%] Built target tng_io_zlib +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +[ 0%] Built target doxygen-version +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +Scanning dependencies of target sphinx-input-rst +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. +make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +Scanning dependencies of target doxygen-xml make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/plots/xvgr.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/plots/xvgr.png +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/build +[ 2%] Built target tng_io_obj cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2019.1/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2019.1/docs/conf-vars.py.cmakein -D VERSION_OUT=/build/gromacs-2019.1/build/documentation/docs/sphinx-input/conf-vars.py -D SPHINX_EXTENSION_PATH=/build/gromacs-2019.1/docs -D RELENG_PATH= -D IMAGE_CONVERT_STRING=impossible -D EXPECTED_DOXYGEN_VERSION=1.8.5 -D EXPECTED_SPHINX_VERSION=1.6.1 -D CMAKE_MINIMUM_REQUIRED_VERSION=3.4.3 -D REQUIRED_CUDA_VERSION=7.0 -D REQUIRED_OPENCL_MIN_VERSION=1.2 -D REQUIRED_CUDA_COMPUTE_CAPABILITY=3.0 -D REGRESSIONTEST_VERSION=2019.1 -D SOURCE_MD5SUM=unknown -D REGRESSIONTEST_MD5SUM_STRING=unknown -D GMX_TNG_MINIMUM_REQUIRED_VERSION=1.7.10 -D GMX_LMFIT_REQUIRED_VERSION=7.0 -D "GMX_MANUAL_DOI_STRING=Please reference this documentation as https://doi.org/10.5281/zenodo.2564761." -D "GMX_SOURCE_DOI_STRING=To cite the source code for this release, please cite https://doi.org/10.5281/zenodo.2564764." -P /build/gromacs-2019.1/cmake/gmxConfigureVersionInfo.cmake -cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/index.rst make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/download.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/download.rst +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/index.rst +[ 4%] Built target libgromacs_external +cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/download.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/download.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/conf.py /build/gromacs-2019.1/build/documentation/docs/sphinx-input/conf.py +[ 4%] Built target view_objlib cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/links.dat /build/gromacs-2019.1/build/documentation/docs/sphinx-input/links.dat -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2019.1/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2019.1/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/gromacs-2019.1/cmake/gmxConfigureVersionInfo.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 0%] Built target mdrun_objlib -[ 0%] Built target lmfit_objlib -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 0%] Built target tng_io_zlib cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/build-system.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/build-system.rst +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=xml -P RunDoxygen.cmake +[ 19%] Built target libgromacs_generated cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/change-management.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/change-management.rst +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-input/conf-vars.py -[ 2%] Built target tng_io_obj cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/commitstyle.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/commitstyle.rst -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/documentation-generation.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/documentation-generation.rst +NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. +Running Doxygen... cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/contribute.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/contribute.rst -[ 2%] Built target view_objlib cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/doxygen.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/doxygen.rst -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch Doxyfile-version -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -[ 2%] Built target sphinx-image-conversion cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/error-handling.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/error-handling.rst -[ 2%] Built target doxygen-source-timestamp -[ 4%] Built target libgromacs_external cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/formatting.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/formatting.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/gmxtree.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/gmxtree.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/includestyle.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/includestyle.rst @@ -75172,16 +75222,12 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/naming.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/naming.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/overview.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/overview.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/physical_validation.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/physical_validation.rst -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/redmine-states.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/redmine-states.png cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/relocatable-binaries.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/relocatable-binaries.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/reportstyle.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/reportstyle.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/style.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/style.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/testutils.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/testutils.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/tools.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/tools.rst -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/uncrustify.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/uncrustify.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/fragments/doxygen-links.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/fragments/doxygen-links.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/how-to/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/how-to/index.rst @@ -75189,51 +75235,41 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/how-to/topology.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/how-to/topology.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/how-to/special.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/how-to/special.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/how-to/visualize.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/how-to/visualize.rst -[ 4%] Built target doxygen-version cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/install-guide/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/install-guide/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/2019.1.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/2019.1.rst -[ 19%] Built target libgromacs_generated cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/highlights.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/highlights.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/features.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/performance.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/performance.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/tools.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/tools.rst -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/bugs-fixed.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/bugs-fixed.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/removed-functionality.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/removed-functionality.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/deprecated-functionality.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/deprecated-functionality.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/portability.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/portability.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/miscellaneous.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/miscellaneous.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/2018.6.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/2018.6.rst +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/2018.5.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/2018.5.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/2018.4.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/2018.4.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/2018.3.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/2018.3.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/2018.2.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/2018.2.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/2018.1.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/2018.1.rst -Scanning dependencies of target doxygen-xml cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/highlights.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/highlights.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/features.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/performance.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/performance.rst -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/build cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/tools.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/tools.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/bugs-fixed.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/bugs-fixed.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/removed-features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/removed-features.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/portability.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/portability.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/major/miscellaneous.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/major/miscellaneous.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/2016.5.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/2016.5.rst -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/2016.4.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/2016.4.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/2016.3.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/2016.3.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/2016.2.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/2016.2.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/2016.1.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/2016.1.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/highlights.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/highlights.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/new-features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/new-features.rst -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=xml -P RunDoxygen.cmake cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/performance.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/performance.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/tools.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/tools.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/bugs-fixed.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/bugs-fixed.rst @@ -75244,8 +75280,6 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/cutoff-schemes.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/cutoff-schemes.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/deprecation-policy.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/deprecation-policy.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/environment-variables.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/environment-variables.rst -NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. -Running Doxygen... cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/faq.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/faq.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/floating-point.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/floating-point.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/flow.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/flow.rst @@ -75263,6 +75297,8 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/releng/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/releng/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/releng/jenkins-howto.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/releng/jenkins-howto.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/releng/jenkins-ui.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/releng/jenkins-ui.rst +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/preface.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/preface.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/introduction.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/introduction.rst @@ -75285,33 +75321,29 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/plots/plotje.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/plots/plotje.png cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-input-rst-timestamp.txt make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' [ 29%] Built target sphinx-input-rst /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-input.dir/DependInfo.cmake --color= +[ 93%] Built target libgromacs +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend Scanning dependencies of target sphinx-input make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 29%] Built target sphinx-input -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 93%] Built target libgromacs -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 93%] Built target sphinx-input [ 93%] Built target gmx /usr/bin/make -f docs/CMakeFiles/sphinx-programs.dir/build.make docs/CMakeFiles/sphinx-programs.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' @@ -75413,59 +75445,33 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' [ 96%] Built target doxygen-xml /usr/bin/make -f docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build.make docs/doxygen/CMakeFiles/dep-graphs-dot.dir/depend -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/dep-graphs-dot.dir/DependInfo.cmake --color= +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-user.dir/DependInfo.cmake --color= -Scanning dependencies of target doxygen-user -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs Scanning dependencies of target dep-graphs-dot make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build.make docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build +Scanning dependencies of target doxygen-user +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/python2.7 /build/gromacs-2019.1/docs/doxygen/graphbuilder.py -S /build/gromacs-2019.1 -B /build/gromacs-2019.1/build/documentation --ignore-cycles /build/gromacs-2019.1/docs/doxygen/cycle-suppressions.txt -o /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=user -P RunDoxygen.cmake NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. Running Doxygen... Scanning source tree... Reading source files... -Reading Doxygen XML files... libpath/shortest.c:324: triangulation failed libpath/shortest.c:324: triangulation failed /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/index.rst:25: WARNING: toctree contains reference to nonexisting document u'reference-manual/algorithms' /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/index.rst:25: WARNING: toctree contains reference to nonexisting document u'reference-manual/functions' /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/index.rst:25: WARNING: toctree contains reference to nonexisting document u'reference-manual/special' /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/index.rst:25: WARNING: toctree contains reference to nonexisting document u'reference-manual/analysis' -Writing graphs... -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/doxygen/dep-graphs-dot-timestamp.txt -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 97%] Built target dep-graphs-dot -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/depend -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-lib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-full.dir/DependInfo.cmake --color= -Scanning dependencies of target doxygen-lib -Scanning dependencies of target doxygen-full -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=lib -P RunDoxygen.cmake -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=full -P RunDoxygen.cmake -NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. -Running Doxygen... -NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. -Running Doxygen... +Reading Doxygen XML files... The following warnings were produced by Doxygen: /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp:5145: warning: documented symbol `if *lworkl(* ncv<< 3)' was not declared or defined. /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp:5352: warning: documented symbol `if *rvec(* ncv<< 3)' was not declared or defined. @@ -75477,7 +75483,7 @@ /build/gromacs-2019.1/src/gromacs/utility/arrayref.h:276: warning: @copydetails or @copydoc target 'ArrayRef::fromArray()' not found cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/doxygen/doxygen-user-timestamp.txt make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 97%] Built target doxygen-user +[ 96%] Built target doxygen-user /build/gromacs-2019.1/build/documentation/docs/sphinx-input/how-to/special.rst:84: WARNING: undefined label: ff (if the link has no caption the label must precede a section header) /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/definitions.rst:284: WARNING: undefined label: virial (if the link has no caption the label must precede a section header) /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/details.rst:241: WARNING: undefined label: lj (if the link has no caption the label must precede a section header) @@ -75510,6 +75516,32 @@ /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/terminology.rst:72: WARNING: undefined label: pbc (if the link has no caption the label must precede a section header) /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/terminology.rst:135: WARNING: undefined label: temp-coupling (if the link has no caption the label must precede a section header) /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/terminology.rst:370: WARNING: undefined label: md (if the link has no caption the label must precede a section header) +Writing graphs... +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/doxygen/dep-graphs-dot-timestamp.txt +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 97%] Built target dep-graphs-dot +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-lib.dir/DependInfo.cmake --color= +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-full.dir/DependInfo.cmake --color= +Scanning dependencies of target doxygen-lib +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs +Scanning dependencies of target doxygen-full +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=lib -P RunDoxygen.cmake +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=full -P RunDoxygen.cmake +NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. +Running Doxygen... +NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. +Running Doxygen... make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' [ 98%] Built target webpage-sphinx libpath/shortest.c:324: triangulation failed @@ -75517,265 +75549,6 @@ libpath/shortest.c:324: triangulation failed libpath/shortest.c:324: triangulation failed The following warnings were produced by Doxygen: -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_95910c9ee0799930bdcb9a098ce77226_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_97821878ed085dbd2f2120a3dfffc97e_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_a36b71673715938f89cab1fdba4ff778_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_a651860364c792068346b3bf7e517a4d_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_c0cf0fe0f6109acd05f931add0b1fc8d_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_c312871c1abe68829c489bb9a03103ec_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_d0b11f62be0359e75849112cad1766b1_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_d7a371234b2a99c39bc0129442172c60_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_dab375b38fc21e5be70ffb09e244a832_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_e1ed358ca35c2ff10e9db40fa7a56556_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_e8cb953fa5002f117153ad2af439d992_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_ee8b3903a5b832a547d4c24143fdba12_dep.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/dir_f3d3d9b005904145fe397b5d3a7ca8e3_dep.dot is not a readable file or directory... skipping. -warning: source 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-warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/tabulatednormaldistribution_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/template_8cpp__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/threefry_8h__dep__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/threefry_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/timeunitmanager_8h__dep__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/timeunitmanager_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/topologyinformation_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/trajectoryanalysis_8h__dep__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/trajectoryanalysis_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/uniformintdistribution_8h__dep__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/uniformintdistribution_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/uniformrealdistribution_8h__dep__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/uniformrealdistribution_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/unique__cptr_8h__dep__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/unique__cptr_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/utility_8h__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/valuestore_8h__dep__incl.dot is not a readable file or directory... skipping. -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/valuestore_8h__incl.dot is not a readable file or directory... skipping. /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp:5145: warning: documented symbol `if *lworkl(* ncv<< 3)' was not declared or defined. /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp:5352: warning: documented symbol `if *rvec(* ncv<< 3)' was not declared or defined. warning: Included by graph for 'basedefinitions.h' not generated, too many nodes. Consider increasing DOT_GRAPH_MAX_NODES. @@ -75791,7 +75564,6 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' [ 98%] Built target doxygen-lib The following warnings were produced by Doxygen: -warning: source /build/gromacs-2019.1/build/documentation/docs/html/doxygen/html-user/group__module__utility.xhtml.tmp is not a readable file or directory... skipping. warning: Included by graph for 'gmxpre.h' not generated, too many nodes. Consider increasing DOT_GRAPH_MAX_NODES. warning: Include graph for 'runner.cpp' not generated, too many nodes. Consider increasing DOT_GRAPH_MAX_NODES. warning: Included by graph for 'arrayref.h' not generated, too many nodes. Consider increasing DOT_GRAPH_MAX_NODES. @@ -75911,7 +75683,7 @@ dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs -/usr/bin/make -j16 -C build/basic install DESTDIR=/build/gromacs-2019.1/debian/gromacs +/usr/bin/make -j15 -C build/basic install DESTDIR=/build/gromacs-2019.1/debian/gromacs make[1]: Entering directory '/build/gromacs-2019.1/build/basic' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic/CMakeFiles /build/gromacs-2019.1/build/basic/CMakeFiles/progress.marks @@ -75919,61 +75691,61 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +[ 0%] Built target lmfit_objlib make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 0%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build [ 2%] Built target tng_io_obj make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 2%] Built target mdrun_objlib -[ 2%] Built target lmfit_objlib -[ 4%] Built target mdrun_test_objlib -[ 5%] Built target view_objlib -[ 8%] Built target libgromacs_external +[ 5%] Built target libgromacs_external +[ 6%] Built target mdrun_test_objlib +[ 8%] Built target view_objlib +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' @@ -75996,12 +75768,12 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' @@ -76734,7 +76506,7 @@ -- Installing: /build/gromacs-2019.1/debian/gromacs/usr/bin/gmx-completion.bash -- Installing: /build/gromacs-2019.1/debian/gromacs/usr/bin/gmx-completion-gmx.bash make[1]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -j16 -C build/basic-dp install DESTDIR=/build/gromacs-2019.1/debian/gromacs +/usr/bin/make -j15 -C build/basic-dp install DESTDIR=/build/gromacs-2019.1/debian/gromacs make[1]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic-dp/CMakeFiles /build/gromacs-2019.1/build/basic-dp/CMakeFiles/progress.marks @@ -76742,61 +76514,61 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 0%] Built target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 2%] Built target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 2%] Built target mdrun_objlib +[ 4%] Built target view_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 0%] Built target mdrun_objlib -[ 2%] Built target libgromacs_external -[ 2%] Built target lmfit_objlib -[ 5%] Built target tng_io_obj +[ 5%] Built target mdrun_test_objlib +[ 8%] Built target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -[ 6%] Built target mdrun_test_objlib -[ 8%] Built target view_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' @@ -76819,17 +76591,17 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. +make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[100%] Built target gmx [100%] Built target template +[100%] Built target gmx make[2]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic-dp/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall @@ -77566,7 +77338,7 @@ dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich -/usr/bin/make -j16 -C build/mpich install DESTDIR=/build/gromacs-2019.1/debian/gromacs-mpich +/usr/bin/make -j15 -C build/mpich install DESTDIR=/build/gromacs-2019.1/debian/gromacs-mpich make[1]: Entering directory '/build/gromacs-2019.1/build/mpich' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/mpich/CMakeFiles /build/gromacs-2019.1/build/mpich/CMakeFiles/progress.marks @@ -77574,45 +77346,45 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/programs /build/gromacs-2019.1/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/programs /build/gromacs-2019.1/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 1%] Built target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +[ 2%] Built target mdrun_objlib +[ 3%] Built target tng_io_obj make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -[ 1%] Built target lmfit_objlib -[ 2%] Built target tng_io_obj -[ 3%] Built target mdrun_objlib -[ 4%] Built target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 4%] Built target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' @@ -77648,7 +77420,7 @@ -- Set runtime path of "/build/gromacs-2019.1/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich" to "$ORIGIN/../lib/x86_64-linux-gnu" -- Installing: /build/gromacs-2019.1/debian/gromacs-mpich/usr/bin/gmx-completion-mdrun_mpi.mpich.bash make[1]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -j16 -C build/mpich-dp install DESTDIR=/build/gromacs-2019.1/debian/gromacs-mpich +/usr/bin/make -j15 -C build/mpich-dp install DESTDIR=/build/gromacs-2019.1/debian/gromacs-mpich make[1]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/mpich-dp/CMakeFiles /build/gromacs-2019.1/build/mpich-dp/CMakeFiles/progress.marks @@ -77656,45 +77428,45 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/programs /build/gromacs-2019.1/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/programs /build/gromacs-2019.1/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= [ 1%] Built target lmfit_objlib -[ 2%] Built target tng_io_obj +[ 2%] Built target libgromacs_external [ 3%] Built target mdrun_objlib -[ 4%] Built target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 4%] Built target tng_io_obj make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' @@ -77742,7 +77514,7 @@ dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi -/usr/bin/make -j16 -C build/openmpi install DESTDIR=/build/gromacs-2019.1/debian/gromacs-openmpi +/usr/bin/make -j15 -C build/openmpi install DESTDIR=/build/gromacs-2019.1/debian/gromacs-openmpi make[1]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/openmpi/CMakeFiles /build/gromacs-2019.1/build/openmpi/CMakeFiles/progress.marks @@ -77750,45 +77522,45 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/programs /build/gromacs-2019.1/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/programs /build/gromacs-2019.1/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 1%] Built target lmfit_objlib make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 1%] Built target tng_io_obj -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -[ 2%] Built target libgromacs_external -[ 3%] Built target mdrun_objlib -[ 4%] Built target lmfit_objlib +[ 2%] Built target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 3%] Built target libgromacs_external +[ 4%] Built target mdrun_objlib make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' @@ -77824,7 +77596,7 @@ -- Set runtime path of "/build/gromacs-2019.1/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi" to "$ORIGIN/../lib/x86_64-linux-gnu" -- Installing: /build/gromacs-2019.1/debian/gromacs-openmpi/usr/bin/gmx-completion-mdrun_mpi.openmpi.bash make[1]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -j16 -C build/openmpi-dp install DESTDIR=/build/gromacs-2019.1/debian/gromacs-openmpi +/usr/bin/make -j15 -C build/openmpi-dp install DESTDIR=/build/gromacs-2019.1/debian/gromacs-openmpi make[1]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/openmpi-dp/CMakeFiles /build/gromacs-2019.1/build/openmpi-dp/CMakeFiles/progress.marks @@ -77833,44 +77605,44 @@ /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/programs /build/gromacs-2019.1/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/programs /build/gromacs-2019.1/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -[ 1%] Built target libgromacs_external -[ 2%] Built target lmfit_objlib -[ 3%] Built target mdrun_objlib -[ 4%] Built target tng_io_obj +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 1%] Built target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 2%] Built target lmfit_objlib +[ 3%] Built target tng_io_obj +[ 4%] Built target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' @@ -77957,7 +77729,7 @@ Now scanning "/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc", found 23772 files. Now have 23772 files in total. Removed 0 files due to nonunique device and inode. -Total size is 187250301 bytes or 179 MiB +Total size is 187255403 bytes or 179 MiB Removed 5898 files due to unique sizes from list.17874 files left. Now eliminating candidates based on first bytes:removed 5251 files from list.12623 files left. Now eliminating candidates based on last bytes:removed 1350 files from list.11273 files left. @@ -79665,14 +79437,14 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataBinAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AbstractPlotModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractPlotModule__inherit__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AbstractPlotModule__inherit__graph.map -> ../html-full/classgmx_1_1AbstractPlotModule__inherit__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_0e536420dab16a46e678a6742f6bcfea_dep.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/dir_0e536420dab16a46e678a6742f6bcfea_dep.map @@ -79707,14 +79479,14 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/uniformrealdistribution_8h__dep__incl.map -> ../html-lib/uniformrealdistribution_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/bc_s.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/bc_s.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/bc_s.png -> ../html-full/bc_s.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map @@ -79855,10 +79627,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/nbsearch_8h__dep__incl.map -> ../html-lib/nbsearch_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/selectionoptionbehavior_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/selectionoptionbehavior_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/selectionoptionbehavior_8h__incl.map -> ../html-full/selectionoptionbehavior_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOption__coll__graph.map -> ../html-full/classgmx_1_1SelectionOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOption__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOption__coll__graph.map -> ../html-full/classgmx_1_1SelectionOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FileNameOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FileNameOption__inherit__graph.map -> ../html-full/classgmx_1_1FileNameOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FileNameOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOption__coll__graph.map @@ -79877,10 +79649,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOption__coll__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOption__inherit__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__inherit__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__coll__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__inherit__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__coll__graph.map -> ../html-full/classgmx_1_1BooleanOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOption__coll__graph.map @@ -79889,36 +79661,36 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/selection_8h__dep__incl.map -> ../html-full/selection_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/localatomsetdata_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/localatomsetdata_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/localatomsetdata_8h__dep__incl.map -> ../html-lib/localatomsetdata_8h__dep__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOption__coll__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOption__inherit__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOption__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOption__coll__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOption__coll__graph.map -> ../html-full/classgmx_1_1IntegerOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOption__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/seed_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/seed_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/seed_8h__dep__incl.map -> ../html-lib/seed_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NotImplementedError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NotImplementedError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NotImplementedError__coll__graph.map -> ../html-full/classgmx_1_1NotImplementedError__coll__graph.map absolute: 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/options_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/options_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/options_8h__dep__incl.map -> ../html-full/options_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1APIError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1APIError__inherit__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1APIError__inherit__graph.map -> ../html-full/classgmx_1_1APIError__inherit__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOption__inherit__graph.map -> ../html-full/classgmx_1_1FloatOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOption__coll__graph.map -> ../html-full/classgmx_1_1FloatOption__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InvalidInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InvalidInputError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InvalidInputError__coll__graph.map -> ../html-full/classgmx_1_1InvalidInputError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOption__inherit__graph.map -> ../html-full/classgmx_1_1FloatOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InvalidInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InvalidInputError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InvalidInputError__inherit__graph.map -> ../html-full/classgmx_1_1InvalidInputError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InvalidInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InvalidInputError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InvalidInputError__coll__graph.map -> ../html-full/classgmx_1_1InvalidInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Options__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Options__coll__graph.map -> ../html-full/classgmx_1_1Options__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Options__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map @@ -79927,18 +79699,18 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_5391a40c18b9d17ef33891155eb7da13_dep.map -> ../html-full/dir_5391a40c18b9d17ef33891155eb7da13_dep.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/splitbar.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/splitbar.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/splitbar.png -> ../html-full/splitbar.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_51.map -> 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_52.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_191.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_52.map -> ../html-full/inherit_graph_191.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_78.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_376.map @@ -80041,10 +79813,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_76.map -> ../html-full/inherit_graph_354.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_103.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_505.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_103.map -> ../html-full/inherit_graph_505.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_68.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_325.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_68.map -> ../html-full/inherit_graph_325.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FileNameOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map @@ -80059,10 +79831,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__coll__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_73.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_330.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_73.map -> ../html-full/inherit_graph_330.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map @@ -80079,10 +79851,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_70.map -> ../html-lib/inherit_graph_185.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_59.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_223.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_59.map -> ../html-full/inherit_graph_223.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_44.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_147.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_44.map -> ../html-full/inherit_graph_147.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/baseversion_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/baseversion_8h__dep__incl.map @@ -80105,14 +79877,14 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/cstringutil_8h__incl.map -> ../html-full/cstringutil_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_14.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_69.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_14.map -> ../html-full/inherit_graph_69.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__coll__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1FloatOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1FloatOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1FloatOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_71.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_328.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_71.map -> ../html-full/inherit_graph_328.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_107.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_545.map @@ -80121,10 +79893,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IOptionsContainerWithSections__coll__graph.map -> ../html-full/classgmx_1_1IOptionsContainerWithSections__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_91.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_471.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_91.map -> ../html-full/inherit_graph_471.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_80.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_379.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_80.map -> ../html-full/inherit_graph_379.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/allocator_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/allocator_8h__incl.map @@ -80141,10 +79913,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_101.map -> ../html-full/inherit_graph_491.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_39.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_66.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_39.map -> ../html-lib/inherit_graph_66.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/md__enums_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/md__enums_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/md__enums_8h__incl.map -> ../html-full/md__enums_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_104.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_514.map @@ -80173,16 +79945,16 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/init_8h__dep__incl.map -> ../html-lib/init_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_38.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_140.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_38.map -> ../html-full/inherit_graph_140.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__inherit__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__coll__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__inherit__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/localatomset_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/localatomset_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/localatomset_8h__dep__incl.map -> ../html-lib/localatomset_8h__dep__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisData__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisData__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisData__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisData__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisData__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisData__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisData__coll__graph.map -> ../html-full/classgmx_1_1AnalysisData__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisData__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisData__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisData__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisData__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_63.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_279.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_63.map -> ../html-full/inherit_graph_279.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/form_9.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_9.png @@ -80213,20 +79985,20 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1UserInputError__coll__graph.map -> ../html-full/classgmx_1_1UserInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/form_7.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_7.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/form_7.png -> ../html-full/form_7.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ToleranceError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ToleranceError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ToleranceError__inherit__graph.map -> ../html-full/classgmx_1_1ToleranceError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ToleranceError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ToleranceError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ToleranceError__coll__graph.map -> ../html-full/classgmx_1_1ToleranceError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ToleranceError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ToleranceError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ToleranceError__inherit__graph.map -> ../html-full/classgmx_1_1ToleranceError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_36.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_136.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_36.map -> ../html-full/inherit_graph_136.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_17.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_85.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_17.map -> ../html-full/inherit_graph_85.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_96.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_482.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_96.map -> ../html-full/inherit_graph_482.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionManager__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionManager__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionManager__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionManager__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionManager__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionManager__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionManager__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionManager__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionManager__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionManager__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionManager__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionManager__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InternalError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InternalError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InternalError__inherit__graph.map -> ../html-full/classgmx_1_1InternalError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InternalError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InternalError__coll__graph.map @@ -81481,10 +81253,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_2.html -> ../../html-full/search/all_2.html absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_c.js changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_a.js -> ../../html-lib/search/defines_c.js -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> ../../html-full/search/functions_a.js absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_a.js -> ../../html-full/search/functions_a.js +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> ../../html-full/search/functions_a.js absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_r.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_r.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_r.png -> ../../html-full/search/search_r.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_l.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_l.png @@ -85047,16 +84819,16 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/valuestore_8h__incl.map -> ../html-full/valuestore_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/updategroups_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/updategroups_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/updategroups_8h__incl.map -> ../html-full/updategroups_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/domdec_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/domdec_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/domdec_8h__incl.map -> ../html-full/domdec_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__group__analysismodules.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__group__analysismodules.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__group__analysismodules.map -> ../html-full/group__group__analysismodules.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map @@ -85151,24 +84923,24 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__commandline.map -> ../html-full/group__module__commandline.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classt__state__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classt__state__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classt__state__coll__graph.map -> ../html-full/classt__state__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_33.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_40.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_33.png -> ../html-full/form_40.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataSimpleHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataSimpleHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__options.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__options.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__options.map -> ../html-full/group__module__options.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_9.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_39.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_9.map -> ../html-full/inherit_graph_39.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map @@ -85183,14 +84955,14 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataVectorPlotModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataVectorPlotModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/folderclosed.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/folderclosed.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/folderclosed.png -> ../html-full/folderclosed.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> ../html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -> ../html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> ../html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1UserInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1UserInputError__inherit__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1UserInputError__inherit__graph.map -> ../html-full/classgmx_1_1UserInputError__inherit__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dir_87faf9e4662a58bf68d7213a5d34e940_dep.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/dir_87faf9e4662a58bf68d7213a5d34e940_dep.map @@ -85285,10 +85057,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/impl__reference__util__float_8h__incl.map -> ../html-full/impl__reference__util__float_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__domdec.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__domdec.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__domdec.map -> ../html-full/group__module__domdec.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__inherit__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__inherit__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_21.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_28.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_21.png -> ../html-full/form_28.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__taskassignment.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__taskassignment.map @@ -85321,20 +85093,20 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CompositeHelpTopic__inherit__graph.map -> ../html-full/classgmx_1_1CompositeHelpTopic__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__random.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__random.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__random.map -> ../html-full/group__module__random.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> ../html-full/classgmx_1_1EnumOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__inherit__graph.map -> ../html-full/classgmx_1_1EnumOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> ../html-full/classgmx_1_1EnumOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__imd.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__imd.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__imd.map -> ../html-full/group__module__imd.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IOptionManager__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IOptionManager__inherit__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IOptionManager__inherit__graph.map -> ../html-full/classgmx_1_1IOptionManager__inherit__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_15.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_22.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_15.png -> ../html-full/form_22.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimpleHelpTopic__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimpleHelpTopic__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimpleHelpTopic__inherit__graph.map -> ../html-full/classgmx_1_1SimpleHelpTopic__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimpleHelpTopic__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimpleHelpTopic__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimpleHelpTopic__coll__graph.map -> ../html-full/classgmx_1_1SimpleHelpTopic__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimpleHelpTopic__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimpleHelpTopic__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimpleHelpTopic__inherit__graph.map -> ../html-full/classgmx_1_1SimpleHelpTopic__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_41.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_48.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_41.png -> ../html-full/form_48.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__tables.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__tables.map @@ -85387,10 +85159,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/selectionoptionbehavior_8h__incl.map -> ../html-full/selectionoptionbehavior_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/fileredirector_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/fileredirector_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/fileredirector_8h__incl.map -> ../html-full/fileredirector_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOption__coll__graph.map -> ../html-full/classgmx_1_1SelectionOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOption__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOption__coll__graph.map -> ../html-full/classgmx_1_1SelectionOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/cmdlinehelpcontext_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/cmdlinehelpcontext_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/cmdlinehelpcontext_8h__incl.map -> ../html-full/cmdlinehelpcontext_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/awh-params_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/awh-params_8h__incl.map @@ -85431,10 +85203,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__inherit__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__coll__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__inherit__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__coll__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__inherit__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/expfit_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/expfit_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/expfit_8h__incl.map -> ../html-full/expfit_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/cmdlinemodulemanager_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/cmdlinemodulemanager_8h__incl.map @@ -85449,18 +85221,18 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOption__coll__graph.map -> ../html-full/classgmx_1_1BooleanOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/selection_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/selection_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/selection_8h__dep__incl.map -> ../html-full/selection_8h__dep__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__coll__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__inherit__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__coll__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/textreader_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/textreader_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/textreader_8h__incl.map -> ../html-full/textreader_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_43.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_50.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_43.png -> ../html-full/form_50.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOption__coll__graph.map -> ../html-full/classgmx_1_1IntegerOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOption__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOption__coll__graph.map -> ../html-full/classgmx_1_1IntegerOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/stringcompare_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/stringcompare_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/stringcompare_8h__incl.map -> ../html-full/stringcompare_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1NotImplementedError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NotImplementedError__coll__graph.map @@ -85483,18 +85255,18 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOption__coll__graph.map -> ../html-full/classgmx_1_1FloatOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/pairs_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/pairs_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/pairs_8h__incl.map -> ../html-full/pairs_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InvalidInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InvalidInputError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InvalidInputError__coll__graph.map -> ../html-full/classgmx_1_1InvalidInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InvalidInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InvalidInputError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InvalidInputError__inherit__graph.map -> ../html-full/classgmx_1_1InvalidInputError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InvalidInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InvalidInputError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InvalidInputError__coll__graph.map -> ../html-full/classgmx_1_1InvalidInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/energyhistory_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/energyhistory_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/energyhistory_8h__incl.map -> ../html-full/energyhistory_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/replicaexchange_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/replicaexchange_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/replicaexchange_8h__incl.map -> ../html-full/replicaexchange_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> ../html-full/classgmx_1_1Options__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__inherit__graph.map -> ../html-full/classgmx_1_1Options__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> ../html-full/classgmx_1_1Options__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/atomsbuilder_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/atomsbuilder_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/atomsbuilder_8h__incl.map -> ../html-full/atomsbuilder_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/refdata_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/refdata_8h__incl.map @@ -85543,10 +85315,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_31.png -> ../html-full/form_38.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_16.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_23.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_16.png -> ../html-full/form_23.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_101.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_190.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_101.map -> ../html-full/inherit_graph_190.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_97.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_185.map @@ -85559,10 +85331,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_40.map -> ../html-full/inherit_graph_96.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_285.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_538.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_285.map -> ../html-full/inherit_graph_538.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplate__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplate__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplate__coll__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplate__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_236.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_418.map @@ -85627,22 +85399,22 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_239.map -> ../html-full/inherit_graph_426.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/listed-forces_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/listed-forces_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/listed-forces_8h__incl.map -> ../html-full/listed-forces_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> ../html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__coll__graph.map -> ../html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> ../html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__inherit__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_152.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_255.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_152.map -> ../html-full/inherit_graph_255.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_132.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_231.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_132.map -> ../html-full/inherit_graph_231.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CommandLineProgramContext__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CommandLineProgramContext__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CommandLineProgramContext__inherit__graph.map -> ../html-full/classgmx_1_1CommandLineProgramContext__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CommandLineProgramContext__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CommandLineProgramContext__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CommandLineProgramContext__coll__graph.map -> ../html-full/classgmx_1_1CommandLineProgramContext__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CommandLineProgramContext__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CommandLineProgramContext__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CommandLineProgramContext__inherit__graph.map -> ../html-full/classgmx_1_1CommandLineProgramContext__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_290.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_554.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_290.map -> ../html-full/inherit_graph_554.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSection__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSection__coll__graph.map @@ -85717,10 +85489,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_263.map -> ../html-full/inherit_graph_473.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_58.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_132.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_58.map -> ../html-full/inherit_graph_132.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_19.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_60.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_19.map -> ../html-full/inherit_graph_60.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/threadaffinity_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/threadaffinity_8h__incl.map @@ -85745,10 +85517,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_182.map -> ../html-full/inherit_graph_324.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_61.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_135.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_61.map -> ../html-full/inherit_graph_135.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__context_01_4__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__context_01_4__inherit__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__context_01_4__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__context_01_4__inherit__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__context_01_4__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_20.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_61.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_20.map -> ../html-full/inherit_graph_61.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/nbnxn__kernel__cpu_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/nbnxn__kernel__cpu_8h__incl.map @@ -85803,10 +85575,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/bonded_8h__incl.map -> ../html-full/bonded_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_221.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_382.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_221.map -> ../html-full/inherit_graph_382.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionBehavior__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionBehavior__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionBehavior__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionBehavior__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionBehavior__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_195.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_354.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_195.map -> ../html-full/inherit_graph_354.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_192.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_333.map @@ -85821,10 +85593,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_277.map -> ../html-full/inherit_graph_505.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_49.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_113.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_49.map -> ../html-full/inherit_graph_113.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/behaviorcollection_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/behaviorcollection_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/behaviorcollection_8h__incl.map -> ../html-full/behaviorcollection_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/clfftinitializer_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/clfftinitializer_8h__incl.map @@ -85845,10 +85617,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_183.map -> ../html-full/inherit_graph_325.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_24.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_31.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_24.png -> ../html-full/form_31.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/cmdlineparser_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/cmdlineparser_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/cmdlineparser_8h__incl.map -> ../html-full/cmdlineparser_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_74.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_152.map @@ -85859,28 +85631,28 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/abstractdata_8h__incl.map -> ../html-full/abstractdata_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_230.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_393.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_230.map -> ../html-full/inherit_graph_393.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimulationInstabilityError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimulationInstabilityError__coll__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_15.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_56.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_15.map -> ../html-full/inherit_graph_56.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_292.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_556.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_292.map -> ../html-full/inherit_graph_556.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_171.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_275.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_171.map -> ../html-full/inherit_graph_275.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__coll__graph.map -> 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_41.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_98.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_41.map -> ../html-full/inherit_graph_98.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1NoTextMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1NoTextMatch__coll__graph.map @@ -85903,10 +85675,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_90.map -> ../html-full/inherit_graph_173.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_169.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_273.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_169.map -> ../html-full/inherit_graph_273.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TextFileMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TextFileMatch__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TextFileMatch__coll__graph.map -> ../html-full/classgmx_1_1test_1_1TextFileMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TextFileMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TextFileMatch__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TextFileMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1TextFileMatch__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TextFileMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TextFileMatch__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TextFileMatch__coll__graph.map -> ../html-full/classgmx_1_1test_1_1TextFileMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_203.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_364.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_203.map -> ../html-full/inherit_graph_364.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_270.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_485.map @@ -85917,10 +85689,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_122.map -> ../html-full/inherit_graph_223.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_167.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_271.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_167.map -> ../html-full/inherit_graph_271.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_209.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_370.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_209.map -> ../html-full/inherit_graph_370.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_71.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_147.map @@ -86007,10 +85779,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_261.map -> ../html-full/inherit_graph_471.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_174.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_278.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_174.map -> ../html-full/inherit_graph_278.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_79.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_159.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_79.map -> ../html-full/inherit_graph_159.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_249.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_451.map @@ -86057,10 +85829,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_275.map -> ../html-full/inherit_graph_491.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_212.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_373.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_212.map -> ../html-full/inherit_graph_373.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TimeUnitBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TimeUnitBehavior__coll__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_4.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_32.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_4.map -> ../html-full/inherit_graph_32.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/md__enums_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/md__enums_8h__incl.map @@ -86153,10 +85925,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_65.map -> ../html-full/inherit_graph_140.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/strdb_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/strdb_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/strdb_8h__incl.map -> ../html-full/strdb_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__inherit__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map -> ../html-full/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/gmxregex_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/gmxregex_8h__incl.map @@ -86245,14 +86017,14 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_30.map -> ../html-full/inherit_graph_85.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_267.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_482.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_267.map -> ../html-full/inherit_graph_482.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionManager__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionManager__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionManager__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionManager__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionManager__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionManager__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionManager__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionManager__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InternalError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InternalError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InternalError__coll__graph.map -> ../html-full/classgmx_1_1InternalError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionManager__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionManager__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionOptionManager__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionManager__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InternalError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InternalError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InternalError__inherit__graph.map -> ../html-full/classgmx_1_1InternalError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InternalError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InternalError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InternalError__coll__graph.map -> ../html-full/classgmx_1_1InternalError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_279.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_510.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_279.map -> ../html-full/inherit_graph_510.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_252.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_458.map @@ -86297,20 +86069,20 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_31.map -> ../html-full/inherit_graph_86.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_64.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_139.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_64.map -> ../html-full/inherit_graph_139.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileIOError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileIOError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileIOError__coll__graph.map -> ../html-full/classgmx_1_1FileIOError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileIOError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileIOError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileIOError__inherit__graph.map -> ../html-full/classgmx_1_1FileIOError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileIOError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileIOError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileIOError__coll__graph.map -> ../html-full/classgmx_1_1FileIOError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/forcetable_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/forcetable_8h__incl.map changed: 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RestraintMDModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__inherit__graph.map -> ../html-full/classgmx_1_1RestraintMDModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RestraintMDModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__coll__graph.map -> ../html-full/classgmx_1_1RestraintMDModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RestraintMDModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__inherit__graph.map -> ../html-full/classgmx_1_1RestraintMDModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_302.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_612.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_302.map -> ../html-full/inherit_graph_612.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RangeError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RangeError__coll__graph.map @@ -86351,10 +86123,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_207.map -> ../html-full/inherit_graph_368.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_223.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_384.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_223.map -> ../html-full/inherit_graph_384.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StandardInputStream__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StandardInputStream__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StandardInputStream__coll__graph.map -> ../html-full/classgmx_1_1StandardInputStream__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StandardInputStream__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StandardInputStream__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StandardInputStream__inherit__graph.map -> ../html-full/classgmx_1_1StandardInputStream__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StandardInputStream__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StandardInputStream__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StandardInputStream__coll__graph.map -> ../html-full/classgmx_1_1StandardInputStream__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_39.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_95.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_39.map -> ../html-full/inherit_graph_95.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/selhelp_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/selhelp_8h__incl.map @@ -86391,10 +86163,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_12.png -> ../html-full/form_12.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_190.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_331.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_190.map -> ../html-full/inherit_graph_331.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringInputStream__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__coll__graph.map -> ../html-full/classgmx_1_1StringInputStream__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringInputStream__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__inherit__graph.map -> ../html-full/classgmx_1_1StringInputStream__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringInputStream__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__coll__graph.map -> ../html-full/classgmx_1_1StringInputStream__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_44.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_102.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_44.map -> ../html-full/inherit_graph_102.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_76.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_155.map @@ -86427,10 +86199,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_298.map -> ../html-full/inherit_graph_602.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_198.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_359.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_198.map -> ../html-full/inherit_graph_359.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextInputFile__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TextInputFile__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextInputFile__coll__graph.map -> ../html-full/classgmx_1_1TextInputFile__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextInputFile__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TextInputFile__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextInputFile__inherit__graph.map -> ../html-full/classgmx_1_1TextInputFile__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextInputFile__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TextInputFile__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextInputFile__coll__graph.map -> ../html-full/classgmx_1_1TextInputFile__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_30.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_37.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_30.png -> ../html-full/form_37.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_200.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_361.map @@ -88769,10 +88541,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_0.js -> ../../html-full/search/related_1.js absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_5.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_5.js changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_5.js -> ../../html-full/search/groups_5.js -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_a.js -> ../../html-full/search/functions_a.js absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_a.js -> ../../html-full/search/functions_a.js +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_a.js -> ../../html-full/search/functions_a.js absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_r.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_r.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_r.png -> ../../html-full/search/search_r.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_l.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_l.png @@ -89199,15 +88971,15 @@ dh_installdeb -a dh_md5sums -a dh_builddeb -a -dpkg-deb: building package 'libgromacs4' in '../libgromacs4_2019.1-1_amd64.deb'. -dpkg-deb: building package 'libgromacs4-dbgsym' in '../libgromacs4-dbgsym_2019.1-1_amd64.deb'. dpkg-deb: building package 'gromacs' in '../gromacs_2019.1-1_amd64.deb'. -dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2019.1-1_amd64.deb'. -dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2019.1-1_amd64.deb'. dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2019.1-1_amd64.deb'. -dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2019.1-1_amd64.deb'. dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2019.1-1_amd64.deb'. +dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2019.1-1_amd64.deb'. +dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2019.1-1_amd64.deb'. +dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2019.1-1_amd64.deb'. +dpkg-deb: building package 'libgromacs4-dbgsym' in '../libgromacs4-dbgsym_2019.1-1_amd64.deb'. dpkg-deb: building package 'gromacs-mpich' in '../gromacs-mpich_2019.1-1_amd64.deb'. +dpkg-deb: building package 'libgromacs4' in '../libgromacs4_2019.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gromacs_2019.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -89215,12 +88987,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/852631/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/852631/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2767995 and its subdirectories -I: Current time: Tue Sep 20 10:13:19 -12 2022 -I: pbuilder-time-stamp: 1663711999 +I: removing directory /srv/workspace/pbuilder/852631 and its subdirectories +I: Current time: Thu Aug 19 07:28:32 +14 2021 +I: pbuilder-time-stamp: 1629307712