Diff of the two buildlogs: -- --- b1/build.log 2021-01-15 23:59:10.423804712 +0000 +++ b2/build.log 2021-01-16 00:05:38.727226426 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 15 11:51:41 -12 2021 -I: pbuilder-time-stamp: 1610754701 +I: Current time: Fri Feb 18 20:22:30 +14 2022 +I: pbuilder-time-stamp: 1645165350 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Mon Jan 21 22:22:34 2019 -12 +gpgv: Signature made Wed Jan 23 00:22:34 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +30,170 @@ dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/64923/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2995/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2995/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2995/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='64923' - PS1='# ' - PS2='> ' + INVOCATION_ID=aed1ee5f9e254e618518986c2a2e08c8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2995 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.C5Nae1rUzo/pbuilderrc_9mmA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.C5Nae1rUzo/b1 --logfile b1/build.log lambda-align_1.0.3-5.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.C5Nae1rUzo/pbuilderrc_drQ9 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.C5Nae1rUzo/b2 --logfile b2/build.log lambda-align_1.0.3-5.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.9.0-0.bpo.2-amd64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 6 20:26 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/64923/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Feb 18 20:22 sh -> bash + lrwxrwxrwx 1 root root 4 Feb 10 04:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/2995/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -267,7 +301,7 @@ Get: 60 http://deb.debian.org/debian buster/main amd64 libseqan2-dev all 2.4.0+dfsg-11 [1220 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u3 [844 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] -Fetched 30.8 MB in 1s (33.9 MB/s) +Fetched 30.8 MB in 0s (67.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -539,7 +573,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-5 dpkg-buildpackage: info: source distribution unstable @@ -608,7 +642,7 @@ -- Build files have been written to: /build/lambda-align-1.0.3/build make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build - cd build && make -j15 "INSTALL=install --strip-program=true" + cd build && make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build/CMakeFiles/progress.marks @@ -621,17 +655,17 @@ make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= Scanning dependencies of target lambda_indexer -Scanning dependencies of target lambda make[3]: Leaving directory '/build/lambda-align-1.0.3/build' +Scanning dependencies of target lambda make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' -[ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o -cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=15 -O2 -g -DNDEBUG -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp -[ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=15 -O2 -g -DNDEBUG -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp +[ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o +cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=16 -O2 -g -DNDEBUG -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp +[ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o +cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=16 -O2 -g -DNDEBUG -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp In file included from /build/lambda-align-1.0.3/src/misc.hpp:34, from /build/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/lambda-align-1.0.3/src/lambda_indexer.cpp:31: @@ -2159,12 +2193,12 @@ ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=15 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=16 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=15 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=16 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/lambda-align-1.0.3/build' @@ -2172,172 +2206,172 @@ make[1]: Leaving directory '/build/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/lambda-align-1.0.3' -cd build/tests && ctest 15 +cd build/tests && ctest 16 Test project /build/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa - 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.26 sec + 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.22 sec Start 2: test_mkindex_blastn_fm - 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.29 sec + 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.31 sec Start 3: test_mkindex_blastp_sa - 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.10 sec + 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.12 sec Start 4: test_mkindex_blastp_fm - 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.13 sec + 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.16 sec Start 5: test_mkindex_blastx_sa - 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.09 sec + 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.13 sec Start 6: test_mkindex_blastx_fm - 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.12 sec + 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.16 sec Start 7: test_mkindex_tblastn_sa - 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.27 sec + 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.26 sec Start 8: test_mkindex_tblastn_fm - 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.34 sec + 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.32 sec Start 9: test_mkindex_tblastx_sa - 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.24 sec + 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.23 sec Start 10: test_mkindex_tblastx_fm 10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.34 sec Start 11: test_search_blastn_sa_m0 -11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 2.66 sec +11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 3.02 sec Start 12: test_search_blastn_sa_m8 -12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 2.79 sec +12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 2.08 sec Start 13: test_search_blastn_sa_m9 -13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 2.39 sec +13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 2.27 sec Start 14: test_search_blastn_sa_sam -14/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.40 sec +14/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.72 sec Start 15: test_search_blastn_sa_bam -15/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.44 sec +15/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.10 sec Start 16: test_search_blastn_sa_m9.gz -16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 2.54 sec +16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 2.20 sec Start 17: test_search_blastn_sa_sam.bz2 -17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 3.21 sec +17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 3.01 sec Start 18: test_search_blastn_fm_m0 -18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 3.12 sec +18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 2.64 sec Start 19: test_search_blastn_fm_m8 -19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 2.91 sec +19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 2.22 sec Start 20: test_search_blastn_fm_m9 -20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 2.76 sec +20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 2.20 sec Start 21: test_search_blastn_fm_sam -21/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.89 sec +21/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.35 sec Start 22: test_search_blastn_fm_bam -22/80 Test #22: test_search_blastn_fm_bam ........ Passed 3.02 sec +22/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.24 sec Start 23: test_search_blastn_fm_m9.gz -23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 2.95 sec +23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 2.35 sec Start 24: test_search_blastn_fm_sam.bz2 -24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 4.24 sec +24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 3.01 sec Start 25: test_search_blastp_sa_m0 -25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.42 sec +25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.33 sec Start 26: test_search_blastp_sa_m8 -26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.31 sec +26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.32 sec Start 27: test_search_blastp_sa_m9 -27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.35 sec +27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.30 sec Start 28: test_search_blastp_sa_sam -28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.33 sec +28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.31 sec Start 29: test_search_blastp_sa_bam -29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.31 sec +29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.28 sec Start 30: test_search_blastp_sa_m9.gz -30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.36 sec +30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.33 sec Start 31: test_search_blastp_sa_sam.bz2 -31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.43 sec +31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.38 sec Start 32: test_search_blastp_fm_m0 -32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.94 sec +32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.40 sec Start 33: test_search_blastp_fm_m8 -33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.79 sec +33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.36 sec Start 34: test_search_blastp_fm_m9 -34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.85 sec +34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.36 sec Start 35: test_search_blastp_fm_sam -35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.66 sec +35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.39 sec Start 36: test_search_blastp_fm_bam -36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.44 sec +36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.38 sec Start 37: test_search_blastp_fm_m9.gz -37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.45 sec +37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.39 sec Start 38: test_search_blastp_fm_sam.bz2 -38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.49 sec +38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.45 sec Start 39: test_search_blastx_sa_m0 -39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 1.21 sec +39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 1.05 sec Start 40: test_search_blastx_sa_m8 -40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 1.03 sec +40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 0.95 sec Start 41: test_search_blastx_sa_m9 -41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 1.03 sec +41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 0.90 sec Start 42: test_search_blastx_sa_sam -42/80 Test #42: test_search_blastx_sa_sam ........ Passed 1.26 sec +42/80 Test #42: test_search_blastx_sa_sam ........ Passed 0.94 sec Start 43: test_search_blastx_sa_bam -43/80 Test #43: test_search_blastx_sa_bam ........ Passed 1.59 sec +43/80 Test #43: test_search_blastx_sa_bam ........ Passed 0.91 sec Start 44: test_search_blastx_sa_m9.gz -44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 1.50 sec +44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 0.99 sec Start 45: test_search_blastx_sa_sam.bz2 -45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 1.75 sec +45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 1.47 sec Start 46: test_search_blastx_fm_m0 -46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.51 sec +46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.25 sec Start 47: test_search_blastx_fm_m8 -47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.24 sec +47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.13 sec Start 48: test_search_blastx_fm_m9 -48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.23 sec +48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.22 sec Start 49: test_search_blastx_fm_sam -49/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.27 sec +49/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.16 sec Start 50: test_search_blastx_fm_bam -50/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.33 sec +50/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.26 sec Start 51: test_search_blastx_fm_m9.gz -51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 1.34 sec +51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 1.26 sec Start 52: test_search_blastx_fm_sam.bz2 -52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 1.83 sec +52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 2.03 sec Start 53: test_search_tblastn_sa_m0 -53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 1.07 sec +53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 0.99 sec Start 54: test_search_tblastn_sa_m8 -54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 0.98 sec +54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 0.81 sec Start 55: test_search_tblastn_sa_m9 -55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 0.90 sec +55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 0.89 sec Start 56: test_search_tblastn_sa_sam -56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 0.93 sec +56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 0.86 sec Start 57: test_search_tblastn_sa_bam -57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 0.88 sec +57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 0.80 sec Start 58: test_search_tblastn_sa_m9.gz -58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 1.10 sec +58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 0.91 sec Start 59: test_search_tblastn_sa_sam.bz2 -59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 1.34 sec +59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 1.16 sec Start 60: test_search_tblastn_fm_m0 -60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.07 sec +60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.28 sec Start 61: test_search_tblastn_fm_m8 -61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 0.98 sec +61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 1.09 sec Start 62: test_search_tblastn_fm_m9 -62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 0.97 sec +62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 0.91 sec Start 63: test_search_tblastn_fm_sam -63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 0.94 sec +63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 0.93 sec Start 64: test_search_tblastn_fm_bam -64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 0.94 sec +64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 1.04 sec Start 65: test_search_tblastn_fm_m9.gz -65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.10 sec +65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.00 sec Start 66: test_search_tblastn_fm_sam.bz2 -66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 1.37 sec +66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 1.30 sec Start 67: test_search_tblastx_sa_m0 -67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 4.51 sec +67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 4.03 sec Start 68: test_search_tblastx_sa_m8 -68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 3.92 sec +68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 3.54 sec Start 69: test_search_tblastx_sa_m9 -69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 4.86 sec +69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 4.35 sec Start 70: test_search_tblastx_sa_sam -70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 5.13 sec +70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 3.70 sec Start 71: test_search_tblastx_sa_bam -71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 3.69 sec +71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 3.96 sec Start 72: test_search_tblastx_sa_m9.gz -72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 4.44 sec +72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 4.22 sec Start 73: test_search_tblastx_sa_sam.bz2 -73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 7.01 sec +73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 8.08 sec Start 74: test_search_tblastx_fm_m0 -74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.54 sec +74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.82 sec Start 75: test_search_tblastx_fm_m8 -75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 3.91 sec +75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 4.45 sec Start 76: test_search_tblastx_fm_m9 -76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.78 sec +76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.37 sec Start 77: test_search_tblastx_fm_sam -77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 5.86 sec +77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 4.38 sec Start 78: test_search_tblastx_fm_bam -78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.17 sec +78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 3.64 sec Start 79: test_search_tblastx_fm_m9.gz -79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.82 sec +79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.58 sec Start 80: test_search_tblastx_fm_sam.bz2 -80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 7.18 sec +80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 7.62 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 152.19 sec +Total Test time (real) = 137.92 sec make[1]: Leaving directory '/build/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -2345,7 +2379,7 @@ dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build - cd build && make -j15 install DESTDIR=/build/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j16 install DESTDIR=/build/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build/CMakeFiles/progress.marks @@ -2354,21 +2388,21 @@ make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' -cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' -make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. -make[3]: Leaving directory '/build/lambda-align-1.0.3/build' +cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' -[ 50%] Built target lambda_indexer -[100%] Built target lambda +[ 50%] Built target lambda +make[3]: Leaving directory '/build/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build +make[3]: Entering directory '/build/lambda-align-1.0.3/build' +make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. +make[3]: Leaving directory '/build/lambda-align-1.0.3/build' +[100%] Built target lambda_indexer make[2]: Leaving directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -2429,12 +2463,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/2995/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2995/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/64923 and its subdirectories -I: Current time: Fri Jan 15 11:59:09 -12 2021 -I: pbuilder-time-stamp: 1610755149 +I: removing directory /srv/workspace/pbuilder/2995 and its subdirectories +I: Current time: Fri Feb 18 20:28:56 +14 2022 +I: pbuilder-time-stamp: 1645165736