Diff of the two buildlogs: -- --- b1/build.log 2021-07-23 08:57:40.454886448 +0000 +++ b2/build.log 2021-07-23 09:02:18.232431765 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 22 20:51:17 -12 2021 -I: pbuilder-time-stamp: 1627030277 +I: Current time: Fri Aug 26 05:20:48 +14 2022 +I: pbuilder-time-stamp: 1661440848 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Oct 25 02:52:04 2018 -12 +gpgv: Signature made Fri Oct 26 04:52:04 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -35,136 +35,170 @@ dpkg-source: info: applying spelling2.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2310/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1588/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1588/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1588/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7906a658b8be40d2b808e46d4cbc17a0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2310' - PS1='# ' - PS2='> ' + INVOCATION_ID=1805479f72c940e6a404b1f4f3d77ca6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1588 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7wUzl6XciS/pbuilderrc_ETB1 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7wUzl6XciS/b1 --logfile b1/build.log libgo-perl_0.15-7.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7wUzl6XciS/pbuilderrc_0f45 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7wUzl6XciS/b2 --logfile b2/build.log libgo-perl_0.15-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 20 20:24 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2310/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 26 05:22 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 24 04:46 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/1588/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -291,7 +325,7 @@ Get: 75 http://deb.debian.org/debian buster/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 rename all 1.10-1 [17.2 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 xsltproc amd64 1.1.32-2.2~deb10u1 [122 kB] -Fetched 29.6 MB in 1s (22.3 MB/s) +Fetched 29.6 MB in 2s (11.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -639,7 +673,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-7 dpkg-buildpackage: info: source distribution unstable @@ -661,126 +695,126 @@ Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build - make -j15 + make -j16 make[1]: Entering directory '/build/libgo-perl-0.15' -cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm -cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm -cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm -cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm -cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm +cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm -cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm -cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm -cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm -cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm -cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm -cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm +cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm -cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm -cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm -cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm -cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm -cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm -cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm -cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm -cp GO/Basic.pm blib/lib/GO/Basic.pm -cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm -cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm -cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm +cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm -cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm +cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm +cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm -cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm -cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm -cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm -cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm -cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm +cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm -cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm -cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm +cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm +cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm +cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm -cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm +cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm +cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm +cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm -cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm -cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm +cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm +cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm +cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm +cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm +cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm +cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm +cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm +cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm +cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm +cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm +cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm +cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm +cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm +cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm +cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm +cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm +cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm +cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm +cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm -cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm -cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm -cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm -cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm +cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm +cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm +cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm +cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm +cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm -cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm -cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm -cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm -cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm -cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm -cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm -cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm +cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm +cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm -cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm +cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm -cp GO/Parser.pm blib/lib/GO/Parser.pm -cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm -cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm +cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm +cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm -cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm -cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm -cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm -cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm -cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm -cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm -cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm -cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm -cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm +cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm +cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm +cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm -cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm -cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm -cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm -cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm -cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm -cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm +cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm +cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm +cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm +cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm +cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm +cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm +cp GO/Parser.pm blib/lib/GO/Parser.pm +cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm +cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl +cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl +cp GO/Utils.pm blib/lib/GO/Utils.pm +cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm +cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp go-perl.pod blib/lib/go-perl.pod -cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl -cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl -cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl -cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl -cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl -cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl +cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl -cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl +cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl +cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl -cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl -cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl -cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl -cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm +cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl -cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm -cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm -cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm -cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm -cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm +cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl +cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm +cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl +cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm +cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl +cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl +cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp scripts/go-apply-xslt blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl -cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl +cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report @@ -793,8 +827,8 @@ cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl @@ -815,22 +849,22 @@ cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/go2xml blib/script/go2xml -cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml +cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/build/libgo-perl-0.15' dh_auto_test - make -j15 test TEST_VERBOSE=1 + make -j16 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:55:50 2021 -# Current time GMT: Fri Jul 23 08:55:50 2021 +# Current time local: Fri Aug 26 05:24:11 2022 +# Current time GMT: Thu Aug 25 15:24:11 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -842,8 +876,8 @@ t/t020paths.t ............ 1..7 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:55:53 2021 -# Current time GMT: Fri Jul 23 08:55:53 2021 +# Current time local: Fri Aug 26 05:24:12 2022 +# Current time GMT: Thu Aug 25 15:24:12 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -856,8 +890,8 @@ t/t030detecterror.t ...... 1..4 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:55:53 2021 -# Current time GMT: Fri Jul 23 08:55:53 2021 +# Current time local: Fri Aug 26 05:24:12 2022 +# Current time GMT: Thu Aug 25 15:24:12 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -899,234 +933,234 @@ t/t050oboformat.t ........ 1..6 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:55:54 2021 -# Current time GMT: Fri Jul 23 08:55:54 2021 +# Current time local: Fri Aug 26 05:24:13 2022 +# Current time GMT: Thu Aug 25 15:24:13 2022 # Using Test.pm version 1.31 ok 1 ok 2 -ROOT: molecular_function ROOT: biological_process +ROOT: molecular_function ROOT: cellular_component ok 3 ok 4 -EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003677|GO:0003676|is_a +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003688|GO:0003687|is_a +EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003721|GO:0003720|is_a -EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0003721|GO:0003964|is_a EDGE|GO:0003697|GO:0003677|is_a -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0003688|GO:0003687|is_a -EDGE|GO:0003904|GO:0003913|is_a -EDGE|GO:0003904|GO:0003824|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0003704|GO:0003702|is_a -EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0003717|GO:0003715|is_a -EDGE|GO:0008301|GO:0003677|is_a -EDGE|GO:0008263|GO:0008578|is_a -EDGE|GO:0008263|GO:0003686|is_a -EDGE|GO:0003709|GO:0003700|is_a -EDGE|GO:0003715|GO:0003700|is_a +EDGE|GO:0003678|GO:0003677|is_a +EDGE|GO:0003678|GO:0004386|is_a +EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0008159|GO:0003711|is_a +EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0008148|GO:0003711|is_a +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0005933|GO:0005623|part_of +EDGE|GO:0043025|GO:0005623|part_of +EDGE|GO:0000267|GO:0005623|part_of +EDGE|GO:0005623|GO:0005575|is_a +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003711|GO:0003700|is_a +EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0003709|GO:0003700|is_a +EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003700|GO:0003677|is_a -EDGE|GO:0000182|GO:0003677|is_a -EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0003824|GO:0003674|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0003907|GO:0003686|is_a -EDGE|GO:0008263|GO:0003686|is_a -EDGE|GO:0004844|GO:0003686|is_a -EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003686|GO:0003685|is_a +EDGE|GO:0003685|GO:0003677|is_a +EDGE|GO:0003692|GO:0003677|is_a +EDGE|GO:0003710|GO:0003700|is_a +EDGE|GO:0003683|GO:0003682|is_a +EDGE|GO:0003682|GO:0003677|is_a +EDGE|GO:0003704|GO:0003702|is_a +EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0000144|GO:0030481|is_a -EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0008534|GO:0008578|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0003683|GO:0003682|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0003840|GO:0003824|is_a +EDGE|GO:0003693|GO:0003677|is_a +EDGE|GO:0003834|GO:0003824|is_a +EDGE|GO:0008263|GO:0003686|is_a +EDGE|GO:0008263|GO:0008578|is_a +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0003839|GO:0003824|is_a -EDGE|GO:0008464|GO:0003824|is_a -EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0005624|GO:0000267|is_a -EDGE|GO:0008461|GO:0003824|is_a -EDGE|GO:0003686|GO:0003685|is_a -EDGE|GO:0003685|GO:0003677|is_a +EDGE|GO:0003681|GO:0003677|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0005934|GO:0000134|is_a 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Aug 25 15:24:13 2022 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 -ROOT: root +ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase -ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: root TERMS: 29 +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048148|GO:0030534|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0042595|GO:0007631|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:curators +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -DEFXREFS:GO:ai -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of +SYNS:FAKE:0001|fake synonym|class I PI3K +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 SYNS:drinking|eating DEFXREFS:GO:mah +EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0042630|GO:0009414|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0008150|root|is_a +DEFXREFS:GO:ai +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0048265|is_a -EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a -SYNS:class I PI3K|fake synonym|FAKE:0001 -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a -DEFXREFS:GO:jic +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1271,111 +1305,111 @@ Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: root ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: Part of -ROOT: root TERMS: 29 +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a -SYNS:fake synonym|FAKE:0001|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a +SYNS:FAKE:0001|fake synonym|class I PI3K +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:ai -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0009414|is_a -EDGE|GO:0042630|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0042220|is_a -EDGE|GO:0048148|GO:0030534|is_a -DEFXREFS:GO:jic +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0035094|is_a +EDGE|GO:0035095|GO:0030534|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:curators +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1399,112 +1433,112 @@ ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase -ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: Part of +ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -SYNS:fake synonym|FAKE:0001|class I PI3K +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:GO:ai +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a +SYNS:class I PI3K|fake synonym|FAKE:0001 EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:ISBN:0198506732|FB:bf +DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0008150|root|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of -DEFXREFS:GO:ai -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007636|GO:0007630|is_a -SYNS:drinking|eating +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:mah -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0009414|is_a -EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0042220|is_a -EDGE|GO:0048148|GO:0030534|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0042048|GO:0007635|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +DEFXREFS:GO:curators +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1528,8 +1562,8 @@ t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:03 2021 -# Current time GMT: Fri Jul 23 08:56:03 2021 +# Current time local: Fri Aug 26 05:24:15 2022 +# Current time GMT: Thu Aug 25 15:24:15 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1921,8 +1955,8 @@ t/t080gofmt2.t ........... 1..3 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:06 2021 -# Current time GMT: Fri Jul 23 08:56:06 2021 +# Current time local: Fri Aug 26 05:24:16 2022 +# Current time GMT: Thu Aug 25 15:24:16 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1976,8 +2010,8 @@ t/t100roundtrip.t ........ 1..2 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:06 2021 -# Current time GMT: Fri Jul 23 08:56:06 2021 +# Current time local: Fri Aug 26 05:24:17 2022 +# Current time GMT: Thu Aug 25 15:24:17 2022 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml @@ -2005,8 +2039,8 @@ t/t110basic.t ............ 1..4 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:13 2021 -# Current time GMT: Fri Jul 23 08:56:13 2021 +# Current time local: Fri Aug 26 05:24:21 2022 +# Current time GMT: Thu Aug 25 15:24:21 2022 # Using Test.pm version 1.31 GO:0016604 GO:0016604 @@ -2024,8 +2058,8 @@ t/t130relations.t ........ 1..7 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:15 2021 -# Current time GMT: Fri Jul 23 08:56:15 2021 +# Current time local: Fri Aug 26 05:24:22 2022 +# Current time GMT: Thu Aug 25 15:24:22 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2039,8 +2073,8 @@ t/t140subgraph.t ......... 1..1 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:16 2021 -# Current time GMT: Fri Jul 23 08:56:16 2021 +# Current time local: Fri Aug 26 05:24:22 2022 +# Current time GMT: Thu Aug 25 15:24:22 2022 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 @@ -2052,8 +2086,8 @@ t/t150xref.t ............. 1..2 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:17 2021 -# Current time GMT: Fri Jul 23 08:56:17 2021 +# Current time local: Fri Aug 26 05:24:23 2022 +# Current time GMT: Thu Aug 25 15:24:23 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2061,8 +2095,8 @@ t/t160logicaldef.t ....... 1..5 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:19 2021 -# Current time GMT: Fri Jul 23 08:56:19 2021 +# Current time local: Fri Aug 26 05:24:24 2022 +# Current time GMT: Thu Aug 25 15:24:24 2022 # Using Test.pm version 1.31 ok 1 ns: biological_process @@ -2078,8 +2112,8 @@ t/t170chadoxml.t ......... 1..9 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:20 2021 -# Current time GMT: Fri Jul 23 08:56:20 2021 +# Current time local: Fri Aug 26 05:24:24 2022 +# Current time GMT: Thu Aug 25 15:24:24 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2094,8 +2128,8 @@ t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:23 2021 -# Current time GMT: Fri Jul 23 08:56:23 2021 +# Current time local: Fri Aug 26 05:24:25 2022 +# Current time GMT: Thu Aug 25 15:24:25 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2110,8 +2144,8 @@ t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:24 2021 -# Current time GMT: Fri Jul 23 08:56:24 2021 +# Current time local: Fri Aug 26 05:24:26 2022 +# Current time GMT: Thu Aug 25 15:24:26 2022 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 @@ -2123,8 +2157,8 @@ t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:27 2021 -# Current time GMT: Fri Jul 23 08:56:27 2021 +# Current time local: Fri Aug 26 05:24:27 2022 +# Current time GMT: Thu Aug 25 15:24:27 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2132,8 +2166,8 @@ t/t210cache.t ............ 1..6 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:28 2021 -# Current time GMT: Fri Jul 23 08:56:28 2021 +# Current time local: Fri Aug 26 05:24:27 2022 +# Current time GMT: Thu Aug 25 15:24:27 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2145,8 +2179,8 @@ t/t220xref_esc.t ......... 1..6 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:29 2021 -# Current time GMT: Fri Jul 23 08:56:29 2021 +# Current time local: Fri Aug 26 05:24:28 2022 +# Current time GMT: Thu Aug 25 15:24:28 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2160,8 +2194,8 @@ t/t230term_expression.t .. 1..1 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:30 2021 -# Current time GMT: Fri Jul 23 08:56:30 2021 +# Current time local: Fri Aug 26 05:24:28 2022 +# Current time GMT: Thu Aug 25 15:24:28 2022 # Using Test.pm version 1.31 @@ -2256,8 +2290,8 @@ t/t240ga2obj.t ........... 1..3 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:30 2021 -# Current time GMT: Fri Jul 23 08:56:30 2021 +# Current time local: Fri Aug 26 05:24:29 2022 +# Current time GMT: Thu Aug 25 15:24:29 2022 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2266,8 +2300,8 @@ t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:32 2021 -# Current time GMT: Fri Jul 23 08:56:32 2021 +# Current time local: Fri Aug 26 05:24:29 2022 +# Current time GMT: Thu Aug 25 15:24:29 2022 # Using Test.pm version 1.31 @@ -2319,8 +2353,8 @@ t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:33 2021 -# Current time GMT: Fri Jul 23 08:56:33 2021 +# Current time local: Fri Aug 26 05:24:30 2022 +# Current time GMT: Thu Aug 25 15:24:30 2022 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ @@ -2368,8 +2402,8 @@ t/t290disjoint.t ......... 1..2 # Running under perl version 5.028001 for linux -# Current time local: Thu Jul 22 20:56:35 2021 -# Current time GMT: Fri Jul 23 08:56:35 2021 +# Current time local: Fri Aug 26 05:24:31 2022 +# Current time GMT: Thu Aug 25 15:24:31 2022 # Using Test.pm version 1.31 ok 1 GO:0009987 @@ -2377,7 +2411,7 @@ ok 2 ok All tests successful. -Files=24, Tests=140, 47 wallclock secs ( 0.19 usr 0.24 sys + 7.38 cusr 0.99 csys = 8.80 CPU) +Files=24, Tests=140, 21 wallclock secs ( 0.20 usr 0.05 sys + 6.57 cusr 0.52 csys = 7.34 CPU) Result: PASS make[1]: Leaving directory '/build/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp @@ -2386,114 +2420,114 @@ dh_testroot dh_prep dh_auto_install - make -j15 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j16 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p @@ -2575,31 +2609,31 @@ Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt make[1]: Leaving directory '/build/libgo-perl-0.15' debian/rules override_dh_install @@ -2628,12 +2662,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/1588/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1588/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2310 and its subdirectories -I: Current time: Thu Jul 22 20:57:39 -12 2021 -I: pbuilder-time-stamp: 1627030659 +I: removing directory /srv/workspace/pbuilder/1588 and its subdirectories +I: Current time: Fri Aug 26 05:25:21 +14 2022 +I: pbuilder-time-stamp: 1661441121