Diff of the two buildlogs: -- --- b1/build.log 2021-07-27 23:59:14.488319833 +0000 +++ b2/build.log 2021-07-28 00:58:45.378287310 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Aug 29 17:27:34 -12 2022 -I: pbuilder-time-stamp: 1661837254 +I: Current time: Wed Jul 28 13:59:18 +14 2021 +I: pbuilder-time-stamp: 1627430358 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Feb 5 01:00:49 2019 -12 +gpgv: Signature made Wed Feb 6 03:00:49 2019 +14 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key @@ -31,136 +31,170 @@ dpkg-source: info: applying libgeom-fix-include.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/42958/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/29392/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/29392/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/29392/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='35caedb615414e0e96a40c76e3b2e7ad' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='42958' - PS1='# ' - PS2='> ' + INVOCATION_ID=c5cf7cabf57f4820b286fdb09097c9d9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=29392 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.j3nkfNxHdL/pbuilderrc_MiTM --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.j3nkfNxHdL/b1 --logfile b1/build.log meep_1.7.0-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.j3nkfNxHdL/pbuilderrc_1mTk --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.j3nkfNxHdL/b2 --logfile b2/build.log meep_1.7.0-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 23 02:46 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/42958/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 28 13:59 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 21 22:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/29392/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -365,7 +399,7 @@ Get: 131 http://deb.debian.org/debian buster/main amd64 python-scipy amd64 1.1.0-7 [10.1 MB] Get: 132 http://deb.debian.org/debian buster/main amd64 swig3.0 amd64 3.0.12-2 [1397 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 swig amd64 3.0.12-2 [310 kB] -Fetched 121 MB in 2s (74.6 MB/s) +Fetched 121 MB in 4s (27.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -932,7 +966,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/meep-1.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/meep-1.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package meep dpkg-buildpackage: info: source version 1.7.0-3 dpkg-buildpackage: info: source distribution sid @@ -1180,55 +1214,62 @@ configure: WARNING: unrecognized options: --enable-cxx make[1]: Leaving directory '/build/meep-1.7.0' dh_auto_build - make -j16 + make -j15 make[1]: Entering directory '/build/meep-1.7.0' make all-recursive make[2]: Entering directory '/build/meep-1.7.0' Making all in src make[3]: Entering directory '/build/meep-1.7.0/src' make sphere_quad -(echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/build/meep-1.7.0/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +(echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-1.7.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h make all-am make[4]: Entering 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.libs/casimir.o -libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o .libs/fields.o +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o .libs/dft.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o .libs/h5file.o +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o .libs/energy_and_flux.o +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o +boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': +boundaries.cpp:68:5: warning: this statement may fall through [-Wimplicit-fallthrough=] + switch (d) { + ^~~~~~ +boundaries.cpp:73:3: note: here + case D3: + ^~~~ +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c control_c.cpp -fPIC -DPIC -o control_c.o >/dev/null 2>&1 +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 dft.cpp: In function 'cdouble* meep::collapse_empty_dimensions(cdouble*, int*, int*, meep::volume)': dft.cpp:916:54: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'cdouble' {aka 'struct std::complex'}; use assignment or value-initialization instead [-Wclass-memaccess] memset(reduced_array,0,reduced_size*sizeof(cdouble)); @@ -1239,8 +1280,8 @@ /usr/include/c++/8/complex:1221:12: note: 'cdouble' {aka 'struct std::complex'} declared here struct complex ^~~~~~~~~~~~~~~ -libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c control_c.cpp -fPIC -DPIC -o control_c.o >/dev/null 2>&1 libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 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x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libmeep.la -rpath /usr/lib/x86_64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo control_c.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo step_generic_stride1.lo -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 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structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo step_generic_stride1.lo -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/control_c.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/step_generic_stride1.o -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libmeep.so.12 -o .libs/libmeep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.12" && ln -s "libmeep.so.12.0.0" "libmeep.so.12") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.12.0.0" "libmeep.so") @@ -1450,14 +1484,14 @@ ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" +cp -f /usr/share/libctl/base/main.c main.cpp +cp -f /usr/share/libctl/utils/geom.c geom.cpp +gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" -cp -f /usr/share/libctl/base/main.c main.cpp -cp -f /usr/share/libctl/utils/geom.c geom.cpp -gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. @@ -1476,25 +1510,6 @@ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-main.o `test -f 'main.cpp' || echo './'`main.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp -main.cpp: In function 'char* make_name(const char*, const char*)': -main.cpp:140:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - if (ndir > 5 && !strcmp(".libs", dir+ndir-5)) - ^~ -main.cpp:142:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - strcpy(base0, for_base); base = basename(base0); - ^~~~~~ -In file included from ctl-io.h:7, - from main.cpp:37: -main.cpp: In function 'void main_entry(void*, int, char**)': -main.cpp:202:48: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] - gh_new_procedure ("subplex", (SCM (*)(void)) subplex_scm, 7, 0, 0); - ^~~~~~~~~~~ -main.cpp:212:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] - (SCM (*)(void)) adaptive_integration_scm, 6, 0, 0); - ^~~~~~~~~~~~~~~~~~~~~~~~ -main.cpp:216:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] - (SCM (*)(void)) cadaptive_integration_scm, 6, 0, 0); - ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function 'void ctlio::export_external_functions()': @@ -1537,6 +1552,29 @@ geom.cpp:912:3: note: here default: ^~~~~~~ +main.cpp: In function 'char* make_name(const char*, const char*)': +main.cpp:140:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + if (ndir > 5 && !strcmp(".libs", dir+ndir-5)) + ^~ +main.cpp:142:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + strcpy(base0, for_base); base = basename(base0); + ^~~~~~ +In file included from ctl-io.h:7, + from main.cpp:37: +main.cpp: In function 'void main_entry(void*, int, char**)': +main.cpp:202:48: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] + gh_new_procedure ("subplex", (SCM (*)(void)) subplex_scm, 7, 0, 0); + ^~~~~~~~~~~ +main.cpp:212:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] + (SCM (*)(void)) adaptive_integration_scm, 6, 0, 0); + ^~~~~~~~~~~~~~~~~~~~~~~~ +main.cpp:216:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] + (SCM (*)(void)) cadaptive_integration_scm, 6, 0, 0); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': +structure.cpp:624:10: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] + mat2 = mat1; + ~~~~~^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:29774:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg1 = (meep::component const) scm_to_int(argv[0]); @@ -1544,21 +1582,17 @@ meep_wrap.cxx:29777:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg2 = (meep::component const) scm_to_int(argv[1]); ^ -structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': -structure.cpp:624:10: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] - mat2 = mat1; - ~~~~~^~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-1.7.0/scheme' make[3]: Leaving directory '/build/meep-1.7.0/scheme' Making all in libmeepgeom make[3]: Entering directory '/build/meep-1.7.0/libmeepgeom' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp -/bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp -/bin/bash 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-Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp +/bin/sh ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 meepgeom.cpp: In member function 'void meep_geom::geom_epsilon::eff_chi1inv_matrix(meep::component, meep_geom::symmetric_matrix*, const meep::volume&, double, int)': meepgeom.cpp:747:16: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] @@ -1574,7 +1608,7 @@ material_type mat1, mat2; ^~~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libmeepgeom.la -rpath /usr/lib/x86_64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libmeepgeom.la -rpath /usr/lib/x86_64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -Wl,-rpath -Wl,/build/meep-1.7.0/src/.libs ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeepgeom.so.12" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so.12") libtool: link: (cd ".libs" && rm -f "libmeepgeom.so" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so") @@ -1582,12 +1616,12 @@ x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: x86_64-linux-gnu-ranlib .libs/libmeepgeom.a libtool: link: ( cd ".libs" && rm -f "libmeepgeom.la" && ln -s "../libmeepgeom.la" "libmeepgeom.la" ) -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bend-flux-ll bend-flux-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bend-flux-ll bend-flux-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/bend-flux-ll bend-flux-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath make[3]: Leaving directory '/build/meep-1.7.0/libmeepgeom' Making all in libpympb make[3]: Entering directory '/build/meep-1.7.0/libpympb' -/bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../libmeepgeom -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o libpympb_la-pympb.lo `test -f 'pympb.cpp' || echo './'`pympb.cpp +/bin/sh ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../libmeepgeom -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o libpympb_la-pympb.lo `test -f 'pympb.cpp' || echo './'`pympb.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../libmeepgeom -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c pympb.cpp -fPIC -DPIC -o .libs/libpympb_la-pympb.o pympb.cpp: In member function 'int py_mpb::mode_solver::mean_epsilon(symmetric_matrix*, symmetric_matrix*, mpb_real*, mpb_real, mpb_real, mpb_real, mpb_real, const mpb_real*)': pympb.cpp:379:73: warning: 'mat2' may be used uninitialized in this function [-Wmaybe-uninitialized] @@ -1597,7 +1631,7 @@ else if (!(id1 < id2 && (id1 == id || meep_geom::material_type_equal(mat1, mat))) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../libmeepgeom -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c pympb.cpp -fPIC -DPIC -o libpympb_la-pympb.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/x86_64-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/x86_64-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libpympb_la-pympb.o -Wl,-rpath -Wl,/build/meep-1.7.0/src/.libs ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libpympb.so.12 -o .libs/libpympb.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libpympb.so.12" && ln -s "libpympb.so.12.0.0" "libpympb.so.12") libtool: link: (cd ".libs" && rm -f "libpympb.so" && ln -s "libpympb.so.12.0.0" "libpympb.so") @@ -1610,7 +1644,7 @@ make[3]: Entering directory '/build/meep-1.7.0/python' swig -Wextra -I../src -I../libmeepgeom -I../libpympb -I.. -outdir . -c++ -python -o meep-python.cpp ./meep.i swig -Wextra -I../src -I../libmeepgeom -I../libpympb -I.. -I../libpympb -outdir . -c++ -python -o mpb-python.cpp ./mpb.i -/bin/bash: git: command not found +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -1623,9 +1657,9 @@ fi make all-am make[4]: Entering directory '/build/meep-1.7.0/python' -/bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cpp' || echo './'`meep-python.cpp -/bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _mpb_la-mpb-python.lo `test -f 'mpb-python.cpp' || echo './'`mpb-python.cpp -/bin/bash: git: command not found +/bin/sh ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cpp' || echo './'`meep-python.cpp +/bin/sh ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _mpb_la-mpb-python.lo `test -f 'mpb-python.cpp' || echo './'`mpb-python.cpp +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -1636,8 +1670,8 @@ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi -libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb-python.cpp -fPIC -DPIC -o .libs/_mpb_la-mpb-python.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o .libs/_meep_la-meep-python.o +libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb-python.cpp -fPIC -DPIC -o .libs/_mpb_la-mpb-python.o meep-python.cpp: In function 'PyObject* _wrap_abort__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:18169:103: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_abort__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { @@ -1655,7 +1689,7 @@ SWIGINTERN PyObject *_wrap_master_fprintf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb-python.cpp -fPIC -DPIC -o _mpb_la-mpb-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python2.7/dist-packages/meep/mpb _mpb_la-mpb-python.lo ../libmeepgeom/libmeepgeom.la ../libpympb/libpympb.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python2.7/dist-packages/meep/mpb _mpb_la-mpb-python.lo ../libmeepgeom/libmeepgeom.la ../libpympb/libpympb.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/_mpb_la-mpb-python.o -Wl,-rpath -Wl,/build/meep-1.7.0/libmeepgeom/.libs -Wl,-rpath -Wl,/build/meep-1.7.0/libpympb/.libs ../libmeepgeom/.libs/libmeepgeom.so ../libpympb/.libs/libpympb.so -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_mpb.so.12 -o .libs/_mpb.so.12.0.0 libtool: link: (cd ".libs" && rm -f "_mpb.so.12" && ln -s "_mpb.so.12.0.0" "_mpb.so.12") libtool: link: (cd ".libs" && rm -f "_mpb.so" && ln -s "_mpb.so.12.0.0" "_mpb.so") @@ -1664,7 +1698,7 @@ libtool: link: x86_64-linux-gnu-ranlib .libs/_mpb.a libtool: link: ( cd ".libs" && rm -f "_mpb.la" && ln -s "../_mpb.la" "_mpb.la" ) libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-1.7.0/src/.libs -Wl,-rpath -Wl,/build/meep-1.7.0/libmeepgeom/.libs ../src/.libs/libmeep.so ../libmeepgeom/.libs/libmeepgeom.so -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.12" && ln -s "_meep.so.12.0.0" "_meep.so.12") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.12.0.0" "_meep.so") @@ -1792,79 +1826,79 @@ ./src ./src/libmeep.la ./src/step_generic_stride1.lo -./src/step_generic_stride1.o ./src/step_generic.lo +./src/step_generic_stride1.o ./src/step_generic.o ./src/structure.lo ./src/structure.o ./src/vec.lo ./src/vec.o ./src/susceptibility.lo -./src/mpb.lo -./src/anisotropic_averaging.lo ./src/susceptibility.o +./src/mpb.lo ./src/mpb.o -./src/anisotropic_averaging.o -./src/step_db.lo -./src/step_db.o ./src/update_eh.lo ./src/update_eh.o +./src/step_db.lo +./src/step_db.o +./src/anisotropic_averaging.lo ./src/update_pols.lo ./src/update_pols.o +./src/anisotropic_averaging.o ./src/structure_dump.lo ./src/structure_dump.o +./src/multilevel-atom.lo +./src/step.lo +./src/multilevel-atom.o +./src/step.o ./src/time.lo +./src/near2far.lo ./src/time.o ./src/sources.lo +./src/near2far.o ./src/sources.o -./src/multilevel-atom.lo -./src/multilevel-atom.o ./src/stress.lo -./src/step.lo ./src/stress.o -./src/boundaries.lo -./src/step.o -./src/boundaries.o -./src/near2far.lo -./src/near2far.o -./src/output_directory.lo ./src/dft.lo -./src/output_directory.o ./src/monitor.lo -./src/random.lo ./src/dft.o -./src/random.o -./src/integrate2.lo ./src/monitor.o -./src/integrate2.o -./src/cw_fields.lo -./src/cw_fields.o +./src/output_directory.lo +./src/output_directory.o +./src/integrate2.lo ./src/integrate.lo +./src/integrate2.o +./src/random.lo +./src/random.o +./src/integrate.o ./src/mympi.lo ./src/mympi.o -./src/integrate.o +./src/boundaries.lo +./src/cw_fields.lo +./src/initialize.lo +./src/cw_fields.o +./src/boundaries.o +./src/initialize.o ./src/loop_in_chunks.lo ./src/loop_in_chunks.o -./src/array_slice.lo +./src/h5file.lo +./src/h5file.o ./src/fields.lo -./src/array_slice.o -./src/fields.o -./src/initialize.lo -./src/initialize.o ./src/h5fields.lo +./src/fields.o ./src/h5fields.o ./src/casimir.lo -./src/casimir.o -./src/h5file.lo ./src/energy_and_flux.lo -./src/h5file.o +./src/array_slice.lo +./src/casimir.o ./src/energy_and_flux.o -./src/dft_ldos.lo -./src/dft_ldos.o -./src/bands.lo -./src/bands.o +./src/array_slice.o ./src/bicgstab.lo +./src/bands.lo ./src/bicgstab.o +./src/bands.o +./src/dft_ldos.lo +./src/dft_ldos.o ./src/control_c.lo ./src/control_c.o ./src/sphere-quad.h @@ -1880,39 +1914,39 @@ ./src/.libs/step_generic.o ./src/.libs/structure.o ./src/.libs/vec.o -./src/.libs/susceptibility.o ./src/.libs/mpb.o +./src/.libs/susceptibility.o ./src/.libs/update_eh.o ./src/.libs/update_pols.o -./src/.libs/time.o ./src/.libs/step_db.o +./src/.libs/time.o ./src/.libs/structure_dump.o +./src/.libs/step.o ./src/.libs/stress.o ./src/.libs/sources.o -./src/.libs/step.o ./src/.libs/multilevel-atom.o -./src/.libs/anisotropic_averaging.o -./src/.libs/output_directory.o ./src/.libs/near2far.o -./src/.libs/random.o +./src/.libs/output_directory.o ./src/.libs/monitor.o -./src/.libs/integrate2.o +./src/.libs/random.o ./src/.libs/mympi.o -./src/.libs/boundaries.o ./src/.libs/integrate.o +./src/.libs/integrate2.o +./src/.libs/anisotropic_averaging.o +./src/.libs/initialize.o ./src/.libs/dft.o -./src/.libs/cw_fields.o ./src/.libs/loop_in_chunks.o -./src/.libs/fields.o -./src/.libs/array_slice.o -./src/.libs/initialize.o +./src/.libs/boundaries.o +./src/.libs/cw_fields.o +./src/.libs/h5file.o ./src/.libs/casimir.o ./src/.libs/h5fields.o -./src/.libs/dft_ldos.o -./src/.libs/h5file.o ./src/.libs/energy_and_flux.o -./src/.libs/bicgstab.o +./src/.libs/fields.o +./src/.libs/dft_ldos.o ./src/.libs/bands.o +./src/.libs/bicgstab.o +./src/.libs/array_slice.o ./src/.libs/control_c.o ./src/sphere-quad.o ./src/step_generic_stride1.cpp @@ -1976,15 +2010,15 @@ ./scheme/meep_wrap.cxx ./scheme/meep_wrap.cxx.bak ./scheme/meep_wrap.cxx.orig -./scheme/geom.cpp ./scheme/ctl-io.cpp +./scheme/geom.cpp ./scheme/main.cpp ./scheme/meep-enums.scm -./scheme/ctl-io.h ./scheme/meep_swig_bug_workaround.i ./scheme/meep_enum_renames.i -./scheme/ctl-io.i +./scheme/ctl-io.h ./scheme/meep_renames.i +./scheme/ctl-io.i ./scheme/meep.scm ./scheme/Makefile ./scheme/Makefile.in @@ -2440,65 +2474,65 @@ make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml make[4]: Entering directory '/build/meep-1.7.0/tests' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o aniso_disp aniso_disp.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o aniso_disp aniso_disp.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/aniso_disp aniso_disp.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bench.o bench.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bench bench.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bench bench.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/bench bench.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bragg_transmission.o bragg_transmission.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bragg_transmission bragg_transmission.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bragg_transmission bragg_transmission.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/bragg_transmission bragg_transmission.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o convergence_cyl_waveguide.o convergence_cyl_waveguide.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o convergence_cyl_waveguide convergence_cyl_waveguide.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o convergence_cyl_waveguide convergence_cyl_waveguide.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/convergence_cyl_waveguide convergence_cyl_waveguide.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. 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-latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5test.o h5test.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o h5test h5test.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o h5test h5test.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib 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-ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o pml.o pml.cpp pml.cpp: In function 'int check_pmlcyl(double (*)(const meep::vec&))': pml.cpp:220:10: warning: variable 'prev_refl_const' set but not used [-Wunused-but-set-variable] double prev_refl_const = 0.0, refl_const = 0.0; ^~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o pml pml.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o pml pml.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/pml pml.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-1.7.0/tests' make check-TESTS @@ -2549,28 +2583,28 @@ make pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d make[4]: Entering directory '/build/meep-1.7.0/libmeepgeom' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 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-ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/cyl-ellipsoid-ll cyl-ellipsoid-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o absorber-1d-ll.o absorber-1d-ll.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o absorber-1d-ll absorber-1d-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o absorber-1d-ll absorber-1d-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/absorber-1d-ll absorber-1d-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array-slice-ll.o array-slice-ll.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o array-slice-ll array-slice-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o array-slice-ll array-slice-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/array-slice-ll array-slice-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o user-defined-material.o user-defined-material.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o user-defined-material user-defined-material.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o user-defined-material user-defined-material.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/user-defined-material user-defined-material.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft-fields.o dft-fields.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o dft-fields dft-fields.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o dft-fields dft-fields.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/dft-fields dft-fields.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o gdsII-3d.o gdsII-3d.cpp -/bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o gdsII-3d gdsII-3d.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o gdsII-3d gdsII-3d.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/gdsII-3d gdsII-3d.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-1.7.0/libmeepgeom' make check-TESTS @@ -2598,7 +2632,7 @@ make[3]: Leaving directory '/build/meep-1.7.0/libpympb' Making check in python make[3]: Entering directory '/build/meep-1.7.0/python' -/bin/bash: git: command not found +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -2611,7 +2645,7 @@ fi make check-am make[4]: Entering directory '/build/meep-1.7.0/python' -/bin/bash: git: command not found +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -2712,7 +2746,7 @@ make[4]: Entering directory '/build/meep-1.7.0/src' make[5]: Entering directory '/build/meep-1.7.0/src' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.12.0.0 /build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so.12 || { rm -f libmeep.so.12 && ln -s libmeep.so.12.0.0 libmeep.so.12; }; }) libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.12.0.0 libmeep.so; }; }) @@ -2741,7 +2775,7 @@ make[4]: Entering directory '/build/meep-1.7.0/scheme' make[5]: Entering directory '/build/meep-1.7.0/scheme' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-1.7.0/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/meep-1.7.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-1.7.0/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/share/meep' @@ -2753,9 +2787,9 @@ make[3]: Entering directory '/build/meep-1.7.0/libmeepgeom' make[4]: Entering directory '/build/meep-1.7.0/libmeepgeom' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeepgeom.la '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeepgeom.la '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'libmeepgeom.la' -libtool: install: (cd /build/meep-1.7.0/libmeepgeom; /bin/bash "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libmeepgeom.la -rpath /usr/lib/x86_64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) +libtool: install: (cd /build/meep-1.7.0/libmeepgeom; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libmeepgeom.la -rpath /usr/lib/x86_64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -L/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmeep -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: install: /usr/bin/install -c .libs/libmeepgeom.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so.12 || { rm -f libmeepgeom.so.12 && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so.12; }; }) @@ -2773,9 +2807,9 @@ make[3]: Entering directory '/build/meep-1.7.0/libpympb' make[4]: Entering directory '/build/meep-1.7.0/libpympb' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libpympb.la '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libpympb.la '/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'libpympb.la' -libtool: install: (cd /build/meep-1.7.0/libpympb; /bin/bash "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/x86_64-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) +libtool: install: (cd /build/meep-1.7.0/libpympb; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/x86_64-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libpympb_la-pympb.o -L/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmeep -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libpympb.so.12 -o .libs/libpympb.so.12.0.0 libtool: install: /usr/bin/install -c .libs/libpympb.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libpympb.so.12.0.0 libpympb.so.12 || { rm -f libpympb.so.12 && ln -s libpympb.so.12.0.0 libpympb.so.12; }; }) @@ -2791,7 +2825,7 @@ make[3]: Leaving directory '/build/meep-1.7.0/libpympb' Making install in python make[3]: Entering directory '/build/meep-1.7.0/python' -/bin/bash: git: command not found +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -2804,7 +2838,7 @@ fi make install-am make[4]: Entering directory '/build/meep-1.7.0/python' -/bin/bash: git: command not found +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -2823,9 +2857,9 @@ cp ./solver.py ./mpb_data.py meep/mpb make[5]: Entering directory '/build/meep-1.7.0/python' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' - /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' + /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' libtool: warning: relinking '_meep.la' -libtool: install: (cd /build/meep-1.7.0/python; /bin/bash "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) +libtool: install: (cd /build/meep-1.7.0/python; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmeep -lmeepgeom -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so.12 || { rm -f _meep.so.12 && ln -s _meep.so.12.0.0 _meep.so.12; }; }) @@ -2835,7 +2869,7 @@ libtool: install: chmod 644 /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: install: x86_64-linux-gnu-ranlib /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: warning: remember to run 'libtool --finish /usr/lib/python2.7/dist-packages/meep' -/bin/bash: git: command not found +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -2855,9 +2889,9 @@ /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' /usr/bin/install -c -m 644 mpb.py solver.py mpb_data.py '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' - /bin/bash ../libtool --mode=install /usr/bin/install -c _mpb.la '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' + /bin/sh ../libtool --mode=install /usr/bin/install -c _mpb.la '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' libtool: warning: relinking '_mpb.la' -libtool: install: (cd /build/meep-1.7.0/python; /bin/bash "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python2.7/dist-packages/meep/mpb _mpb_la-mpb-python.lo ../libmeepgeom/libmeepgeom.la ../libpympb/libpympb.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) +libtool: install: (cd /build/meep-1.7.0/python; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python2.7/dist-packages/meep/mpb _mpb_la-mpb-python.lo ../libmeepgeom/libmeepgeom.la ../libpympb/libpympb.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/_mpb_la-mpb-python.o -L/build/meep-1.7.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmeepgeom -lpympb -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_mpb.so.12 -o .libs/_mpb.so.12.0.0 libtool: install: /usr/bin/install -c .libs/_mpb.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb && { ln -s -f _mpb.so.12.0.0 _mpb.so.12 || { rm -f _mpb.so.12 && ln -s _mpb.so.12.0.0 _mpb.so.12; }; }) @@ -2905,70 +2939,70 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 contains an unresolvable reference to symbol PyDict_SetItem: it's probably a plugin -dpkg-shlibdeps: warning: 97 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: symbol shift_to_unit_cell used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol destroy_geom_box_tree used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN9meep_geom7is_fileEPv used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN9meep_geom13check_offdiagEPNS_13medium_structE used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN9meep_geom9is_mediumEPvPPNS_13medium_structE used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol object_of_point_in_tree used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol display_geom_box_tree used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol vector3_scale used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol matrix3x3_inverse used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol make_cnumber used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 contains an unresolvable reference to symbol _PyInstance_Lookup: it's probably a plugin +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgslcblas.so.0 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libharminv.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgfortran.so.5 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libz.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libatlas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgc.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libcblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against liblapack.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libharminv.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgsl.so.23 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libf77blas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libfftw3.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libatlas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libquadmath.so.0 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libz.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libcblas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libf77blas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: 111 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 contains an unresolvable reference to symbol PyExc_OverflowError: it's probably a plugin +dpkg-shlibdeps: warning: symbol display_geometric_object_info used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cvector3_equal used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol normal_to_fixed_object used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol create_geom_box_tree0 used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol geom_fix_objects0 used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol display_geom_box_tree used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol material_of_unshifted_point_in_tree_inobject used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol unit_vector3 used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol display_geometric_object_info used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol ensure_periodicity used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol geom_initialize used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol geometry_center used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol vector3_minus used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol geom_box_tree_stats used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol geometry_lattice used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol adaptive_integration used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol make_sphere used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol vector3_equal used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 contains an unresolvable reference to symbol PyExc_StopIteration: it's probably a plugin -dpkg-shlibdeps: warning: 111 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libgsl.so.23 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libquadmath.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libharminv.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 were not linked against libquadmath.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: 97 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libquadmath.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libgsl.so.23 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libharminv.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) +dpkg-shlibdeps: warning: symbol point_in_periodic_fixed_objectp used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol ensure_periodicity used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN9meep_geom9is_mediumEPvPPNS_13medium_structE used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol normal_to_fixed_object used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol matrix3x3_determinant used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol default_material used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol geometry_center used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol geom_box_tree_stats used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol object_of_point_in_tree used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol geom_fix_object used by debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 were not linked against libquadmath.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/x86_64-linux-gnu/libpympb.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libmeep12-dbgsym' in '../libmeep12-dbgsym_1.7.0-3_amd64.deb'. -dpkg-deb: building package 'libmeep-dev' in '../libmeep-dev_1.7.0-3_amd64.deb'. dpkg-deb: building package 'meep-dbgsym' in '../meep-dbgsym_1.7.0-3_amd64.deb'. dpkg-deb: building package 'python-meep-dbgsym' in '../python-meep-dbgsym_1.7.0-3_amd64.deb'. -dpkg-deb: building package 'meep' in '../meep_1.7.0-3_amd64.deb'. dpkg-deb: building package 'libmeep12' in '../libmeep12_1.7.0-3_amd64.deb'. +dpkg-deb: building package 'meep' in '../meep_1.7.0-3_amd64.deb'. +dpkg-deb: building package 'libmeep12-dbgsym' in '../libmeep12-dbgsym_1.7.0-3_amd64.deb'. +dpkg-deb: building package 'libmeep-dev' in '../libmeep-dev_1.7.0-3_amd64.deb'. dpkg-deb: building package 'python-meep' in '../python-meep_1.7.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../meep_1.7.0-3_amd64.changes @@ -2976,12 +3010,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/29392/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/29392/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/42958 and its subdirectories -I: Current time: Mon Aug 29 18:22:15 -12 2022 -I: pbuilder-time-stamp: 1661840535 +I: removing directory /srv/workspace/pbuilder/29392 and its subdirectories +I: Current time: Wed Jul 28 14:58:44 +14 2021 +I: pbuilder-time-stamp: 1627433924