Diff of the two buildlogs: -- --- b1/build.log 2022-08-30 22:57:49.883678294 +0000 +++ b2/build.log 2022-08-31 00:53:13.883813789 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Oct 2 16:15:38 -12 2023 -I: pbuilder-time-stamp: 1696306538 +I: Current time: Wed Aug 31 12:57:59 +14 2022 +I: pbuilder-time-stamp: 1661900279 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jan 22 14:48:32 2019 -12 +gpgv: Signature made Wed Jan 23 16:48:32 2019 +14 gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc @@ -32,136 +32,171 @@ dpkg-source: info: applying debian_build_cfg I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2080979/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2234718/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +lrwxrwxrwx 1 root root 4 Aug 31 12:58 /bin/sh -> bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2234718/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2234718/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='e4ebd1257ad54c05a3152047289a7690' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2080979' - PS1='# ' - PS2='> ' + INVOCATION_ID=60b6c2749528401194eed5d7f36f34c5 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2234718 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.SmUCTGATCV/pbuilderrc_M2VT --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.SmUCTGATCV/b1 --logfile b1/build.log mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.SmUCTGATCV/pbuilderrc_kU4v --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.SmUCTGATCV/b2 --logfile b2/build.log mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.18.0-0.deb11.3-amd64 #1 SMP PREEMPT_DYNAMIC Debian 5.18.14-1~bpo11+1 (2022-07-28) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-17-amd64 #1 SMP Debian 5.10.136-1 (2022-08-13) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 9 02:47 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2080979/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 31 12:58 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 7 22:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/2234718/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -650,7 +685,7 @@ Get: 428 http://deb.debian.org/debian buster/main amd64 libqt4-opengl amd64 4:4.8.7+dfsg-18+deb10u1 [359 kB] Get: 429 http://deb.debian.org/debian buster/main amd64 libqt4-opengl-dev amd64 4:4.8.7+dfsg-18+deb10u1 [70.3 kB] Get: 430 http://deb.debian.org/debian buster/main amd64 matlab-support-dev all 0.0.21 [7348 B] -Fetched 209 MB in 4s (58.4 MB/s) +Fetched 209 MB in 19s (10.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -2444,7 +2479,8 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_source.changes +hostname: Name or service not known +I: Running cd /build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_source.changes dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0~rc3+git135-g2b8e7d0c2-3 dpkg-buildpackage: info: source distribution unstable @@ -2526,25 +2562,25 @@ - launching 16 threads + launching 15 threads g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o -moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o +moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/app.cpp -o tmp/core/app.o @@ -2601,93 +2637,90 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o -rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o ( 1/505) [CC] tmp/cmd/labelconvert.o -( 2/505) [CC] tmp/src/dwi/tractography/tracking/method.o ( 3/505) [CC] tmp/src/dwi/directions/file.o ( 4/505) [MOC] tmp/src/gui/opengl/lighting_moc.cpp ( 6/505) [CC] tmp/core/version.o ( 5/505) [CC] tmp/cmd/mrcalc.o ( 7/505) [CC] tmp/src/gui/projection.o -( 9/505) [CC] tmp/core/file/dicom/tree.o -( 10/505) [CC] tmp/src/registration/transform/rigid.o +( 2/505) [CC] tmp/src/dwi/tractography/tracking/method.o ( 8/505) [CC] tmp/cmd/mrdump.o -( 11/504) [MOC] tmp/src/gui/shview/render_window_moc.cpp ( 12/504) [CC] tmp/src/dwi/tractography/resampling/upsampler.o -( 14/504) [CC] tmp/src/gui/shapes/cylinder.o +( 11/504) [MOC] tmp/src/gui/shview/render_window_moc.cpp +( 9/505) [CC] tmp/core/file/dicom/tree.o +( 10/504) [CC] tmp/src/registration/transform/rigid.o +( 16/504) [CC] tmp/src/dwi/tractography/mapping/mapper.o ( 13/504) [CC] tmp/cmd/dirstat.o +( 14/504) [CC] tmp/src/gui/shapes/cylinder.o ( 17/504) [CC] tmp/cmd/dwiextract.o ( 15/504) [CC] tmp/cmd/mrconvert.o -( 16/504) [CC] tmp/src/dwi/tractography/mapping/mapper.o -( 18/504) [CC] tmp/src/dwi/directions/set.o +( 18/505) [CC] tmp/src/dwi/directions/set.o ( 19/505) [CC] tmp/core/file/dicom/dict.o -( 20/505) [CC] tmp/core/app.o -( 21/504) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o -( 22/504) [CC] tmp/cmd/tsfmult.o -( 23/505) [CC] tmp/cmd/warpinvert.o -( 24/504) [CC] tmp/core/formats/xds.o +( 20/504) [CC] tmp/core/app.o +( 21/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o +( 22/505) [CC] tmp/cmd/tsfmult.o +( 23/504) [CC] tmp/cmd/warpinvert.o +( 24/505) [CC] tmp/core/formats/xds.o ( 25/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp ( 26/505) [CC] tmp/src/connectome/lut.o ( 27/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp ( 28/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o -( 29/504) [CC] tmp/cmd/shview.o -( 30/504) [CC] tmp/src/gui/mrview/mode/volume.o +( 29/505) [CC] tmp/cmd/shview.o +( 30/505) [CC] tmp/src/gui/mrview/mode/volume.o ( 31/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp ( 32/505) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp ( 33/505) [CC] tmp/src/gui/mrview/tool/odf/item.o ( 34/505) [CC] tmp/src/gui/gui.o -( 35/505) [CC] tmp/cmd/mrcheckerboardmask.o +( 35/504) [CC] tmp/cmd/mrcheckerboardmask.o ( 36/504) [CC] tmp/src/gui/mrview/tool/base.o -( 37/505) [CC] tmp/src/surface/freesurfer.o -( 38/504) [CC] tmp/core/phase_encoding.o -( 39/504) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -( 40/504) [CC] tmp/src/surface/mesh_multi.o +( 37/504) [CC] tmp/src/surface/freesurfer.o +( 38/505) [CC] tmp/core/phase_encoding.o +( 39/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp +( 40/505) [CC] tmp/src/surface/mesh_multi.o ( 41/504) [CC] tmp/cmd/mrthreshold.o -( 42/505) [CC] tmp/core/image_io/ram.o +( 42/504) [CC] tmp/core/image_io/ram.o ( 43/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o -( 44/505) [CC] tmp/cmd/tckmap.o +( 44/504) [CC] tmp/cmd/tckmap.o ( 45/505) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp ( 46/505) [CC] tmp/src/registration/transform/initialiser.o -( 47/504) [CC] tmp/core/math/SH.o -( 48/505) [CC] tmp/src/gui/mrview/adjust_button.o -( 49/505) [CC] tmp/src/gui/mrview/tool/connectome/node.o +( 47/505) [CC] tmp/core/math/SH.o +( 48/504) [CC] tmp/src/gui/mrview/adjust_button.o +( 49/504) [CC] tmp/src/gui/mrview/tool/connectome/node.o ( 50/505) [CC] tmp/src/gui/color_button.o -( 51/504) [CC] tmp/cmd/5ttedit.o +( 51/505) [CC] tmp/cmd/5ttedit.o ( 52/505) [CC] tmp/src/dwi/tractography/roi.o -( 53/504) [CC] tmp/cmd/dirgen.o -( 54/504) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o +( 53/505) [CC] tmp/cmd/dirgen.o +( 54/505) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o ( 55/504) [CC] tmp/cmd/tcksample.o -( 56/504) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o +( 56/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o ( 57/504) [CC] tmp/cmd/mrclusterstats.o ( 58/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp ( 59/505) [CC] tmp/src/dwi/fmls.o -( 60/505) [CC] tmp/src/surface/filter/vertex_transform.o -( 61/504) [CC] tmp/core/formats/nifti2_gz.o -( 62/504) [CC] tmp/src/stats/tfce.o -( 63/505) [CC] tmp/cmd/mrhistogram.o -( 64/504) [CC] tmp/cmd/mrview.o +( 60/504) [CC] tmp/src/surface/filter/vertex_transform.o +( 61/505) [CC] tmp/core/formats/nifti2_gz.o +( 62/505) [CC] tmp/src/stats/tfce.o +( 63/504) [CC] tmp/cmd/mrhistogram.o +( 64/505) [CC] tmp/cmd/mrview.o ( 65/505) [CC] tmp/cmd/sh2amp.o ( 66/504) [CC] tmp/core/file/nifti1_utils.o ( 67/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o -( 68/504) [CC] tmp/cmd/warpconvert.o -( 69/504) [CC] tmp/core/formats/dicom.o +( 68/505) [CC] tmp/cmd/warpconvert.o +( 69/505) [CC] tmp/core/formats/dicom.o ( 70/505) [CC] tmp/src/gui/dialog/image_properties_moc.o -( 71/505) [CC] tmp/cmd/maskdump.o +( 71/504) [CC] tmp/cmd/maskdump.o ( 72/505) [CC] tmp/cmd/meshfilter.o ( 73/504) [CC] tmp/src/gui/dialog/report_exception.o -( 74/505) [CC] tmp/src/dwi/tractography/editing/editing.o -( 75/504) [CC] tmp/cmd/5ttcheck.o -( 76/504) [RCC] tmp/src/gui/shview/icons.cpp -( 77/504) [CC] tmp/src/dwi/tractography/GT/particlegrid.o -( 78/504) [CC] tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o: -core/file/nifti1_utils.cpp: In function 'void MR::File::NIfTI1::write(nifti_1_header&, const MR::Headeg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o +core/file/nifti1_utils.cpp: In function 'void MR::File::NIfTI1::write(nifti_1_header&, const MR::Header&, bool)': +core/file/nifti1_utils.cpp:301:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 18 equals destination size [-Wstringop-truncation] + strncpy ( (char*) &NH.db_name, comments.size() ? comments[0].cg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o +rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o @@ -2764,88 +2797,91 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o -r&, bool)': -core/file/nifti1_utils.cpp:301:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 18 equals destination size [-Wstringop-truncation] - strncpy ( (char*) &NH.db_name, comments.size() ? comments[0].c_str() : "untitled\0\0\0\0\0\0\0\0\0\0\0", 18); +_str() : "untitled\0\0\0\0\0\0\0\0\0\0\0", 18); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -( 79/504) [CC] tmp/src/dwi/tractography/resampling/endpoints.o +( 74/504) [CC] tmp/src/dwi/tractography/editing/editing.o +( 75/505) [CC] tmp/cmd/5ttcheck.o +( 76/505) [RCC] tmp/src/gui/shview/icons.cpp +( 77/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o +( 78/505) [CC] tmp/src/gui/dialog/dialog.o +( 79/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o ( 80/504) [CC] tmp/cmd/mrdegibbs.o ( 81/504) [CC] tmp/src/surface/filter/smooth.o -( 82/505) [CC] tmp/src/dwi/tractography/rng.o -( 83/505) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o +( 82/504) [CC] tmp/src/dwi/tractography/rng.o +( 83/504) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o ( 84/505) [CC] tmp/src/gui/mrview/displayable.o ( 85/505) [CC] tmp/src/gui/shview/render_window_moc.o -( 86/504) [CC] tmp/src/dwi/tractography/connectome/matrix.o -( 87/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp -( 88/505) [CC] tmp/src/dwi/tractography/connectome/extract.o +( 86/505) [CC] tmp/src/dwi/tractography/connectome/matrix.o +( 87/504) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp +( 88/504) [CC] tmp/src/dwi/tractography/connectome/extract.o ( 89/504) [CC] tmp/src/gui/mrview/colourmap_button.o -( 90/504) [CC] tmp/src/gui/mrview/tool/odf/odf.o -( 91/505) [CC] tmp/src/dwi/directions/predefined.o -( 92/504) [CC] tmp/cmd/mrstats.o +( 90/505) [CC] tmp/src/gui/mrview/tool/odf/odf.o +( 91/504) [CC] tmp/src/dwi/directions/predefined.o +( 92/505) [CC] tmp/cmd/mrstats.o ( 93/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o -( 94/504) [CC] tmp/src/dwi/tractography/editing/receiver.o -( 95/504) [CC] tmp/src/dwi/tractography/seeding/basic.o -( 96/505) [CC] tmp/src/gui/opengl/lighting_moc.o +( 94/505) [CC] tmp/src/dwi/tractography/editing/receiver.o +( 95/505) [CC] tmp/src/dwi/tractography/seeding/basic.o +( 96/504) [CC] tmp/src/gui/opengl/lighting_moc.o ( 97/504) [CC] tmp/cmd/tckinfo.o -( 98/504) [CC] tmp/src/stats/permstack.o -( 99/505) [CC] tmp/cmd/dirsplit.o -(100/505) [CC] tmp/src/gui/mrview/tool/odf/model.o +( 98/505) [CC] tmp/src/stats/permstack.o +( 99/504) [CC] tmp/cmd/dirsplit.o +(100/504) [CC] tmp/src/gui/mrview/tool/odf/model.o (101/505) [CC] tmp/core/file/dicom/series.o (102/505) [CC] tmp/cmd/tckglobal.o (103/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp -(104/504) [CC] tmp/core/formats/nifti1.o +(104/505) [CC] tmp/core/formats/nifti1.o (105/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o -(106/504) [CC] tmp/src/gui/shapes/sphere.o -(107/504) [CC] tmp/core/formats/mri.o +(106/505) [CC] tmp/src/gui/shapes/sphere.o +(107/505) [CC] tmp/core/formats/mri.o (108/505) [CC] tmp/cmd/dwi2adc.o (109/504) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o -(110/505) [CC] tmp/core/math/average_space.o +(110/504) [CC] tmp/core/math/average_space.o (111/504) [CC] tmp/src/dwi/gradient.o (112/505) [CC] tmp/cmd/mrfilter.o -(113/504) [CC] tmp/src/dwi/tractography/ACT/act.o -(114/505) [CC] tmp/core/file/dicom/element.o +(113/505) [CC] tmp/src/dwi/tractography/ACT/act.o +(114/504) [CC] tmp/core/file/dicom/element.o (115/505) [CC] tmp/src/dwi/tractography/editing/worker.o -(116/504) [CC] tmp/cmd/tsfthreshold.o -(117/505) [CC] tmp/src/gui/mrview/combo_box_error.o +(116/505) [CC] tmp/cmd/tsfthreshold.o +(117/504) [CC] tmp/src/gui/mrview/combo_box_error.o (118/504) [CC] tmp/cmd/meshconvert.o -(119/504) [CC] tmp/src/registration/nonlinear.o -(120/504) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o +(119/505) [CC] tmp/src/registration/nonlinear.o +(120/505) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o (121/504) [CC] tmp/cmd/amp2response.o (122/504) [CC] tmp/core/file/name_parser.o (123/505) [CC] tmp/cmd/tck2connectome.o (124/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o -(125/504) [CC] tmp/src/dwi/tractography/seeding/list.o -(126/505) [CC] tmp/cmd/maskfilter.o -(127/505) [CC] tmp/core/stats.o -(128/504) [CC] tmp/src/gui/mrview/gui_image.o +(125/505) [CC] tmp/src/dwi/tractography/seeding/list.o +(126/504) [CC] tmp/cmd/maskfilter.o +(127/504) [CC] tmp/core/stats.o +(128/505) [CC] tmp/src/gui/mrview/gui_image.o (129/505) [CC] tmp/src/dwi/tractography/mapping/mapping.o -(130/504) [CC] tmp/src/gui/mrview/window.o -(131/505) [CC] tmp/cmd/mrresize.o +(130/505) [CC] tmp/src/gui/mrview/window.o +(131/504) [CC] tmp/cmd/mrresize.o (132/505) [CC] tmp/cmd/tsfvalidate.o (133/504) [CC] tmp/src/gui/mrview/volume.o -(134/505) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o -(135/504) [CC] tmp/src/gui/cursor.o +(134/504) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o +(135/505) [CC] tmp/src/gui/cursor.o (136/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (137/505) [CC] tmp/src/dwi/tractography/tracking/tractography.o (138/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o -(139/505) [CC] tmp/src/gui/mrview/mode/slice.o -(140/504) [CC] tmp/core/file/dicom/patient.o +(139/504) [CC] tmp/src/gui/mrview/mode/slice.o +(140/505) [CC] tmp/core/file/dicom/patient.o (141/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (142/505) [CC] tmp/core/formats/mrtrix.o (143/505) [CC] tmp/cmd/tckdfc.o (144/504) [CC] tmp/cmd/5tt2gmwmi.o (145/504) [CC] tmp/cmd/warpinit.o -(146/504) [CC] tmp/src/gui/dialog/image_properties.o -(147/504) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -(148/504) [CC] tmp/cmd/tckresample.o +(146/505) [CC] tmp/src/gui/dialog/image_properties.o +(147/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp +(148/505) [CC] tmp/cmd/tckresample.o (149/505) [CC] tmp/src/dwi/tractography/GT/externalenergy.o -(150/505) [CC] tmp/src/surface/algo/mesh2image.o +(150/504) [CC] tmp/src/surface/algo/mesh2image.o (151/504) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o -(152/505) [CC] tmp/core/file/dicom/select_cmdline.o +(152/504) [CC] tmp/core/file/dicom/select_cmdline.o (153/505) [CC] tmp/cmd/tcksift.o -(154/505) [CC] tmp/src/gui/shview/render_window.o +(154/504) [CC] tmp/src/gui/shview/render_window.o (155/504) [CC] tmp/cmd/mesh2voxel.o (156/505) [CCg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o @@ -2939,28 +2975,28 @@ ] tmp/src/connectome/enhance.o (157/504) [CC] tmp/src/surface/scalar.o (158/504) [CC] tmp/src/gui/dialog/progress.o -(159/504) [CC] tmp/core/file/nifti2_utils.o -(160/504) [MOC] tmp/src/gui/lighting_dock_moc.cpp -(161/504) [CC] tmp/cmd/mrhistmatch.o -(162/505) [CC] tmp/cmd/sh2response.o -(163/505) [CC] tmp/cmd/5tt2vis.o -(164/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o -(165/504) [CC] tmp/cmd/fixelconvert.o +(159/505) [CC] tmp/core/file/nifti2_utils.o +(160/505) [MOC] tmp/src/gui/lighting_dock_moc.cpp +(161/505) [CC] tmp/cmd/mrhistmatch.o +(162/504) [CC] tmp/cmd/sh2response.o +(163/504) [CC] tmp/cmd/5tt2vis.o +(164/504) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o +(165/505) [CC] tmp/cmd/fixelconvert.o (166/505) [CC] tmp/cmd/mrcrop.o (167/504) [CC] tmp/core/bitset.o -(168/504) [CC] tmp/cmd/connectomestats.o +(168/505) [CC] tmp/cmd/connectomestats.o (169/504) [CC] tmp/cmd/tsfdivide.o -(170/504) [CC] tmp/core/signal_handler.o -(171/505) [CC] tmp/src/gui/mrview/tool/overlay.o +(170/505) [CC] tmp/core/signal_handler.o +(171/504) [CC] tmp/src/gui/mrview/tool/overlay.o (172/505) [CC] tmp/src/dwi/shells.o (173/504) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o -(174/504) [CC] tmp/src/gui/shview/icons.o +(174/505) [CC] tmp/src/gui/shview/icons.o (175/504) [CC] tmp/src/stats/permtest.o -(176/504) [CC] tmp/cmd/dirflip.o -(177/504) [CC] tmp/cmd/mrregister.o -(178/504) [CC] tmp/cmd/tsfsmooth.o +(176/505) [CC] tmp/cmd/dirflip.o +(177/505) [CC] tmp/cmd/mrregister.o +(178/505) [CC] tmp/cmd/tsfsmooth.o (179/505) [CC] tmp/src/dwi/tractography/GT/gt.o -(180/505) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o +(180/504) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o (181/505) [CC] tmp/src/registration/transform/initialiser_helpers.o (182/504) [CC] tmp/cmd/tcksift2.o (183/504) [CC] tmp/cmd/tcktransform.o @@ -2970,19 +3006,19 @@ (187/505) [CC] tmp/src/dwi/tractography/mapping/writer.o (188/505) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (189/505) [CC] tmp/cmd/mtnormalise.o -(190/504) [CC] tmp/core/file/config.o +(190/505) [CC] tmp/core/file/config.o (191/505) [CC] tmp/src/dwi/tractography/GT/particle.o (192/504) [CC] tmp/src/dwi/tractography/weights.o -(193/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o -(194/505) [CC] tmp/core/formats/list.o -(195/504) [CC] tmp/src/dwi/tractography/file_base.o -(196/505) [CC] tmp/cmd/sh2power.o +(193/504) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o +(194/504) [CC] tmp/core/formats/list.o +(195/505) [CC] tmp/src/dwi/tractography/file_base.o +(196/504) [CC] tmp/cmd/sh2power.o (197/505) [CC] tmp/core/exception.o -(198/504) [CC] tmp/core/formats/mgz.o +(198/505) [CC] tmp/core/formats/mgz.o (199/504) [CC] tmp/cmd/tckstats.o -(200/505) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o +(200/504) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (201/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o -(202/504) [CC] tmp/src/dwi/tractography/tracking/shared.o +(202/505) [CC] tmp/src/dwi/tractography/tracking/shared.o (203/505) [CC] tmp/cmd/mrmetric.o (204/504) [CC] tmp/core/image_io/pipe.o (205/504) [CC] tmp/core/image_io/tiff.o @@ -2990,42 +3026,42 @@ (207/505) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (208/505) [CC] tmp/core/math/stats/glm.o (209/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o -(210/505) [CC] tmp/src/dwi/tractography/SIFT/sift.o +(210/504) [CC] tmp/src/dwi/tractography/SIFT/sift.o (211/504) [CC] tmp/cmd/shconv.o (212/504) [CC] tmp/src/registration/transform/convergence_check.o (213/504) [CC] tmp/src/gui/dwi/renderer.o (214/504) [CC] tmp/src/gui/opengl/shader.o -(215/505) [CC] tmp/core/image_io/mosaic.o -(216/504) [CC] tmp/src/gui/opengl/lighting.o -(217/504) [CC] tmp/core/adapter/reslice.o -(218/504) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -(219/504) [CC] tmp/src/dwi/tractography/connectome/exemplar.o -(220/505) [CC] tmp/core/formats/mrtrix_sparse_legacy.o -(221/505) [CC] tmp/src/gui/lighting_dock_moc.o -(222/505) [CC] tmp/core/file/json_utils.o -(223/505) [CC] tmp/core/file/mmap.o +(215/504) [CC] tmp/core/image_io/mosaic.o +(216/505) [CC] tmp/src/gui/opengl/lighting.o +(217/505) [CC] tmp/core/adapter/reslice.o +(218/505) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp +(219/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o +(220/504) [CC] tmp/core/formats/mrtrix_sparse_legacy.o +(221/504) [CC] tmp/src/gui/lighting_dock_moc.o +(222/504) [CC] tmp/core/file/json_utils.o +(223/504) [CC] tmp/core/file/mmap.o (224/505) [CC] tmp/cmd/tckconvert.o (225/504) [CC] tmp/src/registration/linear.o (226/504) [CC] tmp/cmd/transformcalc.o (227/504) [CC] tmp/cmd/fixelcrop.o -(228/505) [CC] tmp/src/dwi/tractography/GT/mhsampler.o +(228/504) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (229/505) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (230/505) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (231/504) [CC] tmp/src/gui/opengl/gl.o (232/505) [RCC] tmp/src/gui/mrview/icons.cpp -(233/505) [CC] tmp/core/mrtrix.o +(233/504) [CC] tmp/core/mrtrix.o (234/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (235/504) [CC] tmp/cmd/dcminfo.o -(236/504) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o -(237/505) [CC] tmp/cmd/mrmath.o +(236/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o +(237/504) [CC] tmp/cmd/mrmath.o (238/505) [CC] tmp/src/gui/shapes/cube.o -(239/505) [CC] tmp/src/surface/mesh.o -(240/505) [CC] tmp/src/gui/dialog/dicom.o +(239/504) [CC] tmp/src/surface/mesh.o +(240/504) [CC] tmp/src/gui/dialog/dicom.o (241/505) [CC] tmp/core/file/ofstream.o -(242/504) [CC] tmp/src/exec_version.o +(242/505) [CC] tmp/src/exec_version.o (243/504) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (244/504) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o -(245/504) [CC] tmp/src/gui/diag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o +(245/505) [CC] tmp/src/gui/diag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o @@ -3097,10 +3133,11 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o log/list.o (246/505) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o -(247/504) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp -(248/504) [CC] tmp/src/gui/dwi/render_frame_moc.o +(247/505) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp +(248/505) [CC] tmp/src/gui/dwi/render_frame_moc.o (249/505) [CC] tmp/cmd/warpcorrect.o -(250/505) [CC] tmp/core/image_io/scratch.o +(250/504) [CC] tmp/core/image_io/scratch.o +(251/504) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: @@ -3110,67 +3147,66 @@ ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -(251/505) [CC] tmp/cmd/dcmedit.o -(252/505) [CC] tmp/core/file/dicom/mapper.o +(252/504) [CC] tmp/core/file/dicom/mapper.o (253/504) [CC] tmp/core/formats/mgh.o (254/505) [CC] tmp/src/gui/mrview/mode/ortho_moc.o -(255/505) [CC] tmp/cmd/fixelreorient.o -(256/504) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp -(257/504) [CC] tmp/src/dwi/directions/mask.o +(255/504) [CC] tmp/cmd/fixelreorient.o +(256/505) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp +(257/505) [CC] tmp/src/dwi/directions/mask.o (258/504) [CC] tmp/cmd/tckgen.o (259/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (260/505) [CC] tmp/core/axes.o -(261/504) [CC] tmp/core/file/tiff.o -(262/504) [CC] tmp/core/datatype.o -(263/505) [CC] tmp/core/header.o -(264/504) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o +(261/505) [CC] tmp/core/file/tiff.o +(262/505) [CC] tmp/core/datatype.o +(263/504) [CC] tmp/core/header.o +(264/505) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (265/504) [CC] tmp/src/gui/shapes/halfsphere.o (266/505) [CC] tmp/cmd/label2colour.o (267/505) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (268/505) [CC] tmp/src/gui/mrview/displayable_moc.o (269/505) [CC] tmp/cmd/mrtransform.o -(270/504) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o +(270/505) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (271/504) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (272/505) [CC] tmp/src/gui/mrview/colourmap_button_moc.o -(273/505) [CC] tmp/core/math/stats/permutation.o -(274/504) [CC] tmp/cmd/fixel2tsf.o -(275/505) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o +(273/504) [CC] tmp/core/math/stats/permutation.o +(274/505) [CC] tmp/cmd/fixel2tsf.o +(275/504) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (276/504) [CC] tmp/core/image_io/fetch_store.o (277/505) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (278/504) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o -(279/505) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o +(279/504) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (280/505) [CC] tmp/src/dwi/tractography/properties.o (281/505) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (282/505) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (283/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (284/504) [CC] tmp/src/gui/dwi/render_frame.o (285/505) [CC] tmp/core/formats/analyse.o -(286/505) [CC] tmp/core/algo/histogram.o +(286/504) [CC] tmp/core/algo/histogram.o (287/505) [CC] tmp/cmd/transformcompose.o (288/504) [CC] tmp/cmd/voxel2fixel.o -(289/505) [CC] tmp/cmd/fixelcorrespondence.o -(290/505) [CC] tmp/core/formats/tiff.o -(291/505) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o +(289/504) [CC] tmp/cmd/fixelcorrespondence.o +(290/504) [CC] tmp/core/formats/tiff.o +(291/504) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o (292/505) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (293/505) [CC] tmp/src/gui/mrview/icons.o -(294/504) [CC] tmp/cmd/fixel2voxel.o -(295/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o +(294/505) [CC] tmp/cmd/fixel2voxel.o +(295/504) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (296/504) [CC] tmp/cmd/tckedit.o (297/505) [CC] tmp/core/image_io/sparse.o (298/504) [CC] tmp/core/file/key_value.o (299/505) [CC] tmp/src/dwi/tractography/seeding/seeding.o -(300/504) [CC] tmp/cmd/tck2fixel.o +(300/505) [CC] tmp/cmd/tck2fixel.o (301/505) [CC] tmp/src/dwi/tractography/seeding/dynamic.o -(302/505) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -(303/505) [CC] tmp/core/stride.o -(304/505) [CC] tmp/core/formats/nifti1_gz.o +(302/504) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp +(303/504) [CC] tmp/core/stride.o +(304/504) [CC] tmp/core/formats/nifti1_gz.o (305/504) [CC] tmp/src/gui/mrview/colourmap.o (306/504) [CC] tmp/core/file/mgh.o -(307/505) [CC] tmp/src/gui/lighting_dock.o -(308/505) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o -(309/505) [CC] tmp/cmd/dwi2fod.o +(307/504) [CC] tmp/src/gui/lighting_dock.o +(308/504) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o +(309/504) [CC] tmp/cmd/dwi2fod.o (310/505) [CC] tmp/cmd/tsfinfo.o -(311/505) [CC] tmp/src/dwi/tractography/resampling/arc.o +(311/504) [CC] tmp/src/dwi/tractography/resampling/arc.o (312/504) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (313/505) [CC] tmp/cmd/dirmerge.o (314/504) [CC] tmp/core/formats/ram.o @@ -3217,8 +3253,8 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/bessel.cpp -o tmp/core/math/bessel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o @@ -3246,8 +3282,8 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/gz.cpp -o tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/progressbar.cpp -o tmp/core/progressbar.o @@ -3259,112 +3295,113 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o g++ tmp/core/exception.o tmp/core/formats/mgz.o tmp/core/file/json_utils.o tmp/core/stride.o tmp/core/file/dicom/dict.o tmp/core/file/mmap.o tmp/core/formats/mrtrix.o tmp/core/formats/pipe.o tmp/core/formats/nifti1.o tmp/core/image_io/scratch.o tmp/core/math/stats/permutation.o tmp/core/formats/mri.o tmp/core/image_io/fetch_store.o tmp/core/image_io/pipe.o tmp/core/formats/nifti1_gz.o tmp/core/formats/mgh.o tmp/core/image_io/base.o tmp/core/math/average_space.o tmp/core/version.o tmp/core/math/stats/glm.o tmp/core/file/mgh.o tmp/core/file/dicom/element.o tmp/core/formats/mrtrix_utils.o tmp/core/formats/analyse.o tmp/core/file/dicom/mapper.o tmp/core/formats/mrtrix_gz.o tmp/core/file/dicom/tree.o tmp/core/file/nifti2_utils.o tmp/core/algo/histogram.o tmp/core/formats/nifti2_gz.o tmp/core/axes.o tmp/core/signal_handler.o tmp/core/formats/ram.o tmp/core/adapter/reslice.o tmp/core/math/bessel.o tmp/core/file/tiff.o tmp/core/file/nifti1_utils.o tmp/core/datatype.o tmp/core/header.o tmp/core/image_io/ram.o tmp/core/image_io/mosaic.o tmp/core/file/dicom/select_cmdline.o tmp/core/formats/list.o tmp/core/image_io/sparse.o tmp/core/phase_encoding.o tmp/core/mrtrix.o tmp/core/file/name_parser.o tmp/core/image_io/tiff.o tmp/core/file/dicom/study.o tmp/core/file/key_value.o tmp/core/formats/nifti2.o tmp/core/app.o tmp/core/file/config.o tmp/core/thread.o tmp/core/formats/dicom.o tmp/core/image_io/gz.o tmp/core/progressbar.o tmp/core/file/nifti_utils.o tmp/core/bitset.o tmp/core/stats.o tmp/core/file/dicom/patient.o tmp/core/math/SH.o tmp/core/file/dicom/quick_scan.o tmp/core/formats/xds.o tmp/core/image_io/default.o tmp/core/file/ofstream.o tmp/core/formats/tiff.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/file/dicom/series.o tmp/core/file/dicom/image.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -o lib/libmrtrix.so g++ tmp/src/exec_version.o tmp/cmd/transformcompose.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose -g++ tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen g++ tmp/src/dwi/directions/file.o tmp/cmd/dirorder.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder +g++ tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp -g++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrpad -g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel g++ tmp/src/connectome/lut.o tmp/cmd/meshconvert.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert +g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity +g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel +g++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrpad +g++ tmp/src/dwi/tractography/roi.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/view.o tmp/src/dwi/tractography/properties.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/projection.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/dwi/gradient.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/colourmap.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/lighting_dock.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/dwi/renderer.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/combo_box_error.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/shapes/halfsphere.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/window.o tmp/src/connectome/lut.o tmp/src/dwi/shells.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/dialog/dialog.o tmp/src/gui/gui_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/cursor.o tmp/src/gui/mrview/mode/base.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/gui.o tmp/src/dwi/tractography/rng.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/mode/slice.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/freesurfer.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/adjust_button.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/shapes/cube.o tmp/src/surface/mesh.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/color_button.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/surface/scalar.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -m64 -Wl,-O1 -L/usr/lib/x86_64-linux-gnu -L/usr/X11R6/lib64 -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/mrview g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert -g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats -g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power mp/core/thread.o (316/504) [CC] tmp/core/file/nifti_utils.o (317/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o -(318/505) [CC] tmp/src/gui/dialog/file.o -(319/504) [CC] tmp/cmd/tensor2metric.o -(320/505) [CC] tmp/cmd/voxel2mesh.o -(321/505) [CC] tmp/src/gui/mrview/tool/fixel/directory.o -(322/504) [MOC] tmp/src/gui/gui_moc.cpp -(323/504) [CC] tmp/src/gui/gui_moc.o -(324/505) [CC] tmp/cmd/warp2metric.o -(325/504) [CC] tmp/core/formats/pipe.o -(326/505) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o -(327/505) [CC] tmp/src/surface/filter/base.o -(328/504) [CC] tmp/cmd/sh2peaks.o +(318/504) [CC] tmp/src/gui/dialog/file.o +(319/505) [CC] tmp/cmd/tensor2metric.o +(320/504) [CC] tmp/cmd/voxel2mesh.o +(321/504) [CC] tmp/src/gui/mrview/tool/fixel/directory.o +(322/505) [MOC] tmp/src/gui/gui_moc.cpp +(323/505) [CC] tmp/src/gui/gui_moc.o +(324/504) [CC] tmp/cmd/warp2metric.o +(325/505) [CC] tmp/core/formats/pipe.o +(326/504) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o +(327/504) [CC] tmp/src/surface/filter/base.o +(328/505) [CC] tmp/cmd/sh2peaks.o (329/505) [CC] tmp/cmd/afdconnectivity.o -(330/504) [CC] tmp/core/formats/mrtrix_utils.o -(331/504) [CC] tmp/cmd/transformconvert.o +(330/505) [CC] tmp/core/formats/mrtrix_utils.o +(331/505) [CC] tmp/cmd/transformconvert.o (332/504) [CC] tmp/cmd/mrpad.o (333/504) [CC] tmp/cmd/fod2dec.o (334/505) [CC] tmp/src/stats/cfe.o -(335/505) [CC] tmp/cmd/mrinfo.o +(335/504) [CC] tmp/cmd/mrinfo.o (336/505) [CC] tmp/src/gui/mrview/mode/ortho.o (337/504) [CC] tmp/cmd/mrcat.o -(338/505) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o +(338/504) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (339/504) [CC] tmp/cmd/label2mesh.o (340/505) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (341/505) [CC] tmp/core/file/dicom/study.o -(342/504) [MOC] tmp/src/gui/color_button_moc.cpp -(343/504) [CC] tmp/cmd/mraverageheader.o +(342/505) [MOC] tmp/src/gui/color_button_moc.cpp +(343/505) [CC] tmp/cmd/mraverageheader.o (344/504) [CC] tmp/src/dwi/tractography/connectome/connectome.o (345/504) [CC] tmp/cmd/fixel2sh.o (346/505) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (347/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o -(348/505) [CC] tmp/core/formats/nifti2.o +(348/504) [CC] tmp/core/formats/nifti2.o (349/505) [CC] tmp/src/gui/opengl/font.o (350/505) [CC] tmp/cmd/dwinormalise.o (351/505) [CC] tmp/src/surface/polygon.o (352/505) [CC] tmp/cmd/shbasis.o -(353/505) [CC] tmp/cmd/dwi2mask.o -(354/505) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o +(353/504) [CC] tmp/cmd/dwi2mask.o +(354/504) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (355/504) [CC] tmp/core/math/bessel.o -(356/505) [CC] tmp/src/gui/mrview/tool/connectome/edge.o +(356/504) [CC] tmp/src/gui/mrview/tool/connectome/edge.o (357/505) [CC] tmp/src/gui/mrview/tool/odf/preview.o -(359/504) [CC] tmp/src/dwi/sdeconv/csd.o (358/504) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o +(359/505) [CC] tmp/src/dwi/sdeconv/csd.o (360/504) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o (361/504) [CC] tmp/src/connectome/connectome.o -(362/505) [CC] tmp/src/gui/dialog/opengl.o +(362/504) [CC] tmp/src/gui/dialog/opengl.o (363/505) [CC] tmp/core/formats/mrtrix_gz.o -(364/505) [CC] tmp/core/image_io/default.o -(365/505) [CC] tmp/src/dwi/tractography/mapping/voxel.o -(366/504) [CC] tmp/cmd/dwi2tensor.o +(364/504) [CC] tmp/core/image_io/default.o +(365/504) [CC] tmp/src/dwi/tractography/mapping/voxel.o +(366/505) [CC] tmp/cmd/dwi2tensor.o (367/504) [CC] tmp/cmd/fixelcfestats.o -(368/505) [CC] tmp/core/file/dicom/image.o +(368/504) [CC] tmp/core/file/dicom/image.o (369/504) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o -(370/505) [CC] tmp/src/gui/mrview/mode/lightbox.o -(371/505) [CC] tmp/src/registration/transform/affine.o -(372/504) [CC] tmp/cmd/dwidenoise.o +(370/504) [CC] tmp/src/gui/mrview/mode/lightbox.o +(371/504) [CC] tmp/src/registration/transform/affine.o +(372/505) [CC] tmp/cmd/dwidenoise.o (373/505) [CC] tmp/src/gui/mrview/tool/view.o -(374/505) [CC] tmp/cmd/dirorder.o +(374/504) [CC] tmp/cmd/dirorder.o (375/505) [CC] tmp/src/gui/mrview/mode/base.o -(376/504) [CC] tmp/src/dwi/tractography/resampling/resampling.o -(377/505) [CC] tmp/core/image_io/base.o -(378/505) [CC] tmp/cmd/fod2fixel.o -(379/505) [CC] tmp/cmd/amp2sh.o +(376/505) [CC] tmp/src/dwi/tractography/resampling/resampling.o +(377/504) [CC] tmp/core/image_io/base.o +(378/504) [CC] tmp/cmd/fod2fixel.o +(379/504) [CC] tmp/cmd/amp2sh.o (380/505) [CC] tmp/cmd/mredit.o -(381/505) [CC] tmp/src/stats/cluster.o +(381/504) [CC] tmp/src/stats/cluster.o (382/504) [CC] tmp/src/gui/mrview/tool/view_moc.o (383/504) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (384/504) [CC] tmp/src/gui/mrview/adjust_button_moc.o (385/504) [CC] tmp/cmd/vectorstats.o (386/504) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp -(387/505) [CC] tmp/cmd/connectome2tck.o -(388/504) [CC] tmp/src/gui/mrview/spin_box_moc.o +(387/504) [CC] tmp/src/gui/mrview/spin_box_moc.o +(388/504) [CC] tmp/cmd/connectome2tck.o (389/505) [CC] tmp/cmd/peaks2amp.o (390/505) [CC] tmp/core/image_io/gz.o -(391/504) [CC] tmp/core/progressbar.o +(391/505) [CC] tmp/core/progressbar.o (392/505) [MOC] tmp/src/gui/mrview/window_moc.cpp (393/505) [CC] tmp/src/gui/mrview/window_moc.o (394/505) [CC] tmp/core/file/dicom/quick_scan.o (395/504) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (396/505) [CC] tmp/src/gui/opengl/gl_core_3_3.o -(397/504) [CC] tmp/src/gui/color_button_moc.o +(397/505) [CC] tmp/src/gui/color_button_moc.o (398/505) [LD] lib/libmrtrix.so (399/505) [LB] bin/transformcompose -(401/504) [LB] bin/dirgen -(400/505) [LB] bin/dirorder -(402/504) [LB] bin/peaks2amp -(404/504) [LB] bin/mrpad -(405/504) [LB] bin/tck2fixel +(400/504) [LB] bin/dirorder +(401/505) [LB] bin/dirgen +(402/505) [LB] bin/peaks2amp (403/504) [LB] bin/meshconvert +(407/504) [LB] bin/mrstats (406/505) [LB] bin/afdconnectivity -(408/505) [LB] bin/warpconvert -(407/505) [LB] bin/mrstats -(409/505) [LB] bin/sh2power -(410/505) [LB] bin/mrhig++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch +(405/505) [LB] bin/tck2fixel +(404/505) [LB] bin/mrpad +(408/504) [LB] bin/mrview +(409/505) [LB] bin/warpconvert +(410/504) [LB] bin/sh2powg++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power +g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump @@ -3374,7 +3411,6 @@ g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold g++ tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/cmd/labelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath -g++ tmp/src/dwi/tractography/roi.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/view.o tmp/src/dwi/tractography/properties.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/projection.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/dwi/gradient.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/colourmap.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/lighting_dock.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/dwi/renderer.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/combo_box_error.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/shapes/halfsphere.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/window.o tmp/src/connectome/lut.o tmp/src/dwi/shells.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/dialog/dialog.o tmp/src/gui/gui_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/cursor.o tmp/src/gui/mrview/mode/base.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/gui.o tmp/src/dwi/tractography/rng.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/mode/slice.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/freesurfer.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/adjust_button.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/shapes/cube.o tmp/src/surface/mesh.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/color_button.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/surface/scalar.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -m64 -Wl,-O1 -L/usr/lib/x86_64-linux-gnu -L/usr/X11R6/lib64 -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/mrview g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwi2adc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc g++ tmp/cmd/mrcat.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert @@ -3402,7 +3438,6 @@ g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats g++ tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dwi/renderer.o tmp/src/gui/dialog/list.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/shview/render_window.o tmp/src/gui/shview/icons.o tmp/src/dwi/directions/set.o tmp/src/gui/opengl/lighting.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dialog/dicom.o tmp/src/gui/color_button.o tmp/src/gui/dialog/dialog.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/gui_moc.o tmp/src/dwi/directions/predefined.o tmp/src/gui/dialog/progress.o tmp/src/gui/projection.o tmp/cmd/shview.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/opengl/font.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/dialog/file.o tmp/src/gui/color_button_moc.o tmp/src/gui/shview/render_window_moc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -m64 -Wl,-O1 -L/usr/lib/x86_64-linux-gnu -L/usr/X11R6/lib64 -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/shview g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit -g++ tmp/cmd/mrtransform.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/cmd/label2mesh.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh @@ -3459,103 +3494,104 @@ g++ tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o tmp/src/exec_version.o tmp/cmd/mrmetric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric g++ tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/src/stats/permstack.o tmp/src/stats/cluster.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrclusterstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient +g++ tmp/cmd/mrtransform.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform g++ tmp/src/registration/linear.o tmp/src/exec_version.o tmp/src/registration/transform/affine.o tmp/src/registration/transform/initialiser.o tmp/src/registration/nonlinear.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrregister.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister -stmatch -(411/504) [LB] bin/mrthreshold -(412/504) [LB] bin/fod2dec -(413/504) [LB] bin/mrdump -(414/505) [LB] bin/shbasis -(415/505) [LB] bin/warp2metric -(416/505) [LB] bin/fixel2sh -(417/505) [LB] bin/tsfthreshold -(418/505) [LB] bin/labelconvert -(419/504) [LB] bin/mrmath -(420/504) [LB] bin/mrview -(421/505) [LB] bin/dwi2adc +er +(411/505) [LB] bin/mrhistmatch +(412/505) [LB] bin/mrthreshold +(413/504) [LB] bin/fod2dec +(414/504) [LB] bin/mrdump +(415/505) [LB] bin/shbasis +(416/504) [LB] bin/warp2metric +(417/505) [LB] bin/fixel2sh +(418/505) [LB] bin/tsfthreshold +(419/505) [LB] bin/labelconvert +(420/505) [LB] bin/mrmath +(421/504) [LB] bin/dwi2adc (422/504) [LB] bin/mrcat -(423/504) [LB] bin/tckconvert +(423/505) [LB] bin/tckconvert (424/504) [LB] bin/fixel2voxel (425/505) [LB] bin/transformcalc (426/505) [LB] bin/maskfilter (427/505) [LB] bin/warpinvert (428/504) [LB] bin/mrcalc -(429/505) [LB] bin/meshfilter +(429/504) [LB] bin/meshfilter (430/505) [LB] bin/5tt2vis -(431/505) [LB] bin/mrfilter +(431/504) [LB] bin/mrfilter (432/505) [LB] bin/maskdump (433/504) [LB] bin/fixel2tsf -(434/504) [LB] bin/dirmerge +(434/505) [LB] bin/dirmerge (435/505) [LB] bin/tsfdivide (436/505) [LB] bin/vectorstats -(437/505) [LB] bin/warpinit +(437/504) [LB] bin/warpinit (438/504) [LB] bin/voxel2fixel (439/504) [LB] bin/mredit (440/505) [LB] bin/tsfsmooth -(441/504) [LB] bin/fod2fixel +(441/505) [LB] bin/fod2fixel (442/505) [LB] bin/mrconvert -(443/505) [LB] bin/tckdfc +(443/504) [LB] bin/tckdfc (444/505) [LB] bin/dirflip (445/505) [LB] bin/tckstats -(446/505) [LB] bin/shview -(447/504) [LB] bin/dirsplit -(448/505) [LB] bin/mrtransform -(449/504) [LB] bin/fixelcorrespondence -(450/504) [LB] bin/5ttedit -(451/505) [LB] bin/label2mesh -(452/505) [LB] bin/dcmedit -(453/505) [LB] bin/tckgen -(454/504) [LB] bin/warpcorrect -(455/504) [LB] bin/mrdegibbs -(456/505) [LB] bin/tsfvalidate -(457/505) [LB] bin/amp2response -(458/505) [LB] bin/voxel2mesh -(459/504) [LB] bin/tckinfo -(460/504) [LB] bin/fixelconvert -(461/505) [LB] bin/label2colour -(462/504) [LB] bin/mtnormalise -(463/504) [LB] bin/dwiextract -(464/505) [LB] bin/tcksift -(465/505) [LB] bin/fixelcfestats -(466/505) [LB] bin/sh2response -(467/504) [LB] bin/tckglobal -(468/505) [LB] bin/fixelcrop -(469/504) [LB] bin/transformconvert -(470/505) [LB] bin/mrhistogram -(471/504) [LB] bin/tsfmult -(472/505) [LB] bin/dwinormalise -(473/504) [LB] bin/5ttcheck -(474/505) [LB] bin/mrresize -(475/505) [LB] bin/dirstat -(476/504) [LB] bin/tckresample -(477/505) [LB] bin/mrcrop -(478/505) [LB] bin/mraverageheader -(479/505) [LB] bin/mrinfo -(480/504) [LB] bin/mesh2voxel -(481/504) [LB] bin/dwi2tensor -(482/505) [LB] bin/dwidenoise -(483/505) [LB] bin/tcksift2 -(484/504) [LB] bin/dwi2fod -(485/505) [LB] bin/amp2sh -(486/504) [LB] bin/tsfinfo -(487/505) [LB] bin/mrcheckerboardmask -(488/505) [LB] bin/connectomestats -(489/505) [LB] bin/tckmap -(490/504) [LB] bin/tensor2metric -(491/505) [LB] bin/connectome2tck -(492/505) [LB] bin/tck2connectome -(493/504) [LB] bin/5tt2gmwmi -(494/504) [LB] bin/shconv -(495/505) [LB] bin/sh2peaks -(496/504) [LB] bin/sh2amp -(497/505) [LB] bin/dwi2mask -(498/504) [LB] bin/dcminfo -(499/505) [LB] bin/tcktransform -(500/504) [LB] bin/tcksample -(501/504) [LB] bin/tckedit -(502/505) [LB] bin/mrmetric -(503/504) [LB] bin/mrclusterstats -(504/505) [LB] bin/fixelreorient -(505/504) [LB] bin/mrregister +(446/504) [LB] bin/shview +(447/505) [LB] bin/dirsplit +(448/504) [LB] bin/fixelcorrespondence +(449/504) [LB] bin/5ttedit +(450/505) [LB] bin/label2mesh +(451/505) [LB] bin/dcmedit +(452/505) [LB] bin/tckgen +(453/504) [LB] bin/warpcorrect +(454/505) [LB] bin/mrdegibbs +(455/504) [LB] bin/tsfvalidate +(456/505) [LB] bin/amp2response +(457/504) [LB] bin/voxel2mesh +(458/505) [LB] bin/tckinfo +(459/504) [LB] bin/fixelconvert +(460/505) [LB] bin/label2colour +(461/505) [LB] bin/mtnormalise +(462/505) [LB] bin/dwiextract +(463/504) [LB] bin/tcksift +(464/504) [LB] bin/fixelcfestats +(465/504) [LB] bin/sh2response +(466/505) [LB] bin/tckglobal +(467/505) [LB] bin/fixelcrop +(468/505) [LB] bin/transformconvert +(469/504) [LB] bin/mrhistogram +(470/504) [LB] bin/tsfmult +(471/505) [LB] bin/dwinormalise +(472/505) [LB] bin/5ttcheck +(473/504) [LB] bin/mrresize +(474/504) [LB] bin/dirstat +(475/505) [LB] bin/tckresample +(476/505) [LB] bin/mrcrop +(477/504) [LB] bin/mraverageheader +(478/504) [LB] bin/mrinfo +(479/505) [LB] bin/mesh2voxel +(480/505) [LB] bin/dwi2tensor +(481/504) [LB] bin/dwidenoise +(482/505) [LB] bin/tcksift2 +(483/504) [LB] bin/dwi2fod +(484/505) [LB] bin/amp2sh +(485/504) [LB] bin/tsfinfo +(486/504) [LB] bin/mrcheckerboardmask +(487/505) [LB] bin/connectomestats +(488/504) [LB] bin/tckmap +(489/504) [LB] bin/tensor2metric +(490/505) [LB] bin/connectome2tck +(491/504) [LB] bin/tck2connectome +(492/505) [LB] bin/5tt2gmwmi +(493/505) [LB] bin/shconv +(494/505) [LB] bin/sh2peaks +(495/504) [LB] bin/sh2amp +(496/504) [LB] bin/dwi2mask +(497/505) [LB] bin/dcminfo +(498/505) [LB] bin/tcktransform +(499/505) [LB] bin/tcksample +(500/505) [LB] bin/tckedit +(501/505) [LB] bin/mrmetric +(502/504) [LB] bin/mrclusterstats +(503/504) [LB] bin/fixelreorient +(504/505) [LB] bin/mrtransform +(505/505) [LB] bin/mrregister make[1]: Leaving directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' @@ -3675,8 +3711,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'mrtrix3-doc' in '../mrtrix3-doc_3.0~rc3+git135-g2b8e7d0c2-3_all.deb'. dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0~rc3+git135-g2b8e7d0c2-3_amd64.deb'. +dpkg-deb: building package 'mrtrix3-doc' in '../mrtrix3-doc_3.0~rc3+git135-g2b8e7d0c2-3_all.deb'. dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_amd64.changes @@ -3685,12 +3721,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2234718/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2234718/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2080979 and its subdirectories -I: Current time: Mon Oct 2 17:20:50 -12 2023 -I: pbuilder-time-stamp: 1696310450 +I: removing directory /srv/workspace/pbuilder/2234718 and its subdirectories +I: Current time: Wed Aug 31 14:53:12 +14 2022 +I: pbuilder-time-stamp: 1661907192