Diff of the two buildlogs: -- --- b1/build.log 2021-08-09 19:25:55.649732043 +0000 +++ b2/build.log 2021-08-09 20:19:36.657129759 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 11 13:17:23 -12 2022 -I: pbuilder-time-stamp: 1662945443 +I: Current time: Tue Aug 10 09:26:05 +14 2021 +I: pbuilder-time-stamp: 1628537165 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Feb 25 12:20:18 2020 -12 +gpgv: Signature made Wed Feb 26 14:20:18 2020 +14 gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.8.1-1+deb10u1.dsc @@ -40,136 +40,170 @@ dpkg-source: info: applying system_mbedtls_only I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18737/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/29954/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/29954/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/29954/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1ccc9d1bad924905834d160634e21e34' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18737' - PS1='# ' - PS2='> ' + INVOCATION_ID=8c59e3de6859480f94dea9f6e2080178 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=29954 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ScanauXLCi/pbuilderrc_5j10 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ScanauXLCi/b1 --logfile b1/build.log ncbi-blast+_2.8.1-1+deb10u1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ScanauXLCi/pbuilderrc_dJYv --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ScanauXLCi/b2 --logfile b2/build.log ncbi-blast+_2.8.1-1+deb10u1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 9 02:46 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/18737/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 10 09:26 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 7 22:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/29954/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -287,7 +321,7 @@ Get: 62 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] -Fetched 35.9 MB in 1s (66.2 MB/s) +Fetched 35.9 MB in 1s (24.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -561,7 +595,7 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/ncbi-blast+-2.8.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/ncbi-blast+-2.8.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.8.1-1+deb10u1 dpkg-buildpackage: info: source distribution buster @@ -590,77 +624,77 @@ done ) ; \ ) ; \ done -/bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found +/bin/sh: line 1: cd: c++/src/objects/CMakeLists.txt: Not a directory +/bin/sh: line 1: cd: c++/src/objects/Makefile.in: Not a directory +/bin/sh: line 1: cd: c++/src/objects/Makefile.sources: Not a directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 1: cd: c++/src/objects/nt_sources.cmd: Not a directory +/bin/sh: line 1: cd: c++/src/objects/nt_sources.sh: Not a directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 5: ../../../BUILD/build/new_module.sh: No such file or directory make[1]: [debian/rules:109: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module @@ -1159,7 +1193,7 @@ checking for libungif... no checking for libXpm... no checking for freetype-config... no -/build/ncbi-blast+-2.8.1/c++/src/build-system/configure: 1: cd: can't cd to /nonexistent/first-build +/build/ncbi-blast+-2.8.1/c++/src/build-system/configure: line 46914: cd: /nonexistent/second-build: No such file or directory checking for libftgl... no checking for libmagic... no checking for libmimetic... no @@ -4233,812 +4267,837 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-2.8.1' cd c++/BUILD/build && \ - make -j16 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" + make -j15 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -/usr/bin/make -w -j16 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= +/usr/bin/make -w -j15 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[3]: warning: -j16 forced in submake: resetting jobserver mode. -cd corelib/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd util/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd serial/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd serial/datatool/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd util/tables/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd connect/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/blast/core/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd util/sequtil/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/services/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/creaders/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[3]: warning: -j15 forced in submake: resetting jobserver mode. +cd corelib/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd util/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd serial/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd serial/datatool/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd util/tables/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd connect/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/core/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' +cd util/sequtil/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objtools/blast/services/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/creaders/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +cd objmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/readers/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objmgr/util/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +cd objtools/readers/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/seqmasks_io/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +cd objmgr/util/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -cd algo/blast/dbindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +cd objtools/seqmasks_io/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +/usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +/usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +cd algo/blast/dbindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/dustmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/winmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -cd algo/dustmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/winmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. -cd objtools/alnmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/blast/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' +/usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' +cd objtools/alnmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/compress/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/compress/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -cd cgi/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +/usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd cgi/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd html/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd html/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -/usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +/usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/align_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +cd algo/blast/blastinput/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -/usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/align_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -/usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. -/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. -/usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/xregexp/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -/usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/blastinput/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -cd util/xregexp/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd objtools/logging/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -cd objtools/logging/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objtools/edit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/cleanup/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objtools/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +/usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +cd objtools/edit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/cleanup/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd objtools/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -cd algo/blast/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/igblast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' +/usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' +/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +cd algo/blast/igblast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -/usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' +/usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/simple/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' +cd objtools/simple/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' /usr/bin/make[4] (Makefile.logging.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.proteinkmer.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +/usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +/usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' make[4]: Nothing to be done for 'sources'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -cd app/dustmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/dustmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/segmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -cd app/segmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd algo/segmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd app/segmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/winmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +cd app/winmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. -make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -cd objmgr/split/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' +cd objmgr/split/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' -cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' -cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' -/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -cd util/tables/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null -cd util/creaders/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast -w -j15 --jobserver-auth=9,10 all make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/tables/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null +cd util/creaders/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Nothing to be done for 'sources'. +cd objtools/logging/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. -make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' -/usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. -cd objtools/logging/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast -w -j16 --jobserver-auth=9,10 all -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/winmasker -w -j16 --jobserver-auth=9,10 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j16 --jobserver-auth=7,8 all +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +cd corelib/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/tables TMPL=tables -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/creaders TMPL=creaders -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/logging TMPL=logging -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/winmasker -w -j15 --jobserver-auth=9,10 all +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/tables TMPL=tables -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/logging TMPL=logging -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j15 --jobserver-auth=7,8 all +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/creaders TMPL=creaders -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-2.8.1/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -cd corelib/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast -w -j16 --jobserver-auth=9,10 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast -w -j15 --jobserver-auth=9,10 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-2.8.1/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +cd util/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +cd connect/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/sequtil/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] - s_DistinctAlignmentsLength(BlastCompo_Alignment * list) - ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] - s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) - ^~~~~~~~~~~~~~~~~~~~~ +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +cd html/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null +cd corelib/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/xregexp/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -cd util/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null -cd connect/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-2.8.1/c++/BUILD/bin/update_blastdb.pl +make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/logging/message.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/message.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/listener.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -5059,35 +5118,48 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/sequtil/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd html/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-2.8.1/c++/BUILD/bin/update_blastdb.pl -make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd corelib/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -cd util/xregexp/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] + s_DistinctAlignmentsLength(BlastCompo_Alignment * list) + ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] + s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) + ^~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast -w -j15 --jobserver-auth=9,10 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/html TMPL=html -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/logging/message.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/listener.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/message.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -5108,106 +5180,38 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast -w -j16 --jobserver-auth=9,10 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/sequtil TMPL=sequtil -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/sequtil TMPL=sequtil -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j15 --jobserver-auth=7,8 all +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/connect TMPL=xconnect -w -j15 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-2.8.1/c++/src/connect/.#lock-map. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/connect TMPL=xconnect -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' +cd serial/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/compress/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -cd serial/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null -cd util/compress/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-2.8.1/c++/src/connect/.#lock-map. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/html TMPL=html -w -j16 --jobserver-auth=7,8 all -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. -cd cgi/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/get_species_taxids.sh /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/get_species_taxids.sh /build/ncbi-blast+-2.8.1/c++/BUILD/bin/get_species_taxids.sh -make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbsmd.h:37, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbsmd_stub.c:33: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ +cd cgi/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/html.cpp -o html.o @@ -5216,12 +5220,13 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/components.cpp -o components.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/compress/api TMPL=compress -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/serial TMPL=serial -w -j16 --jobserver-auth=7,8 all +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blastmake[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o @@ -5230,21 +5235,26 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_util.c -o ncbi_util.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-m/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/cgi TMPL=cgi -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-2.8.1/c++/src/cgi/.#lock-map. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:76: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - eNcbiCred_MbedTls = 0xC12CC16C - ^~~~~~~~~~ -/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-mmake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/get_species_taxids.sh /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f /build/ncbi-blast+-2.8.1/c++/src/app/blast/get_species_taxids.sh /build/ncbi-blast+-2.8.1/c++/BUILD/bin/get_species_taxids.sh +make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbsmd.h:37, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbsmd_stub.c:33: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/serial TMPL=serial -w -j15 --jobserver-auth=7,8 all ap=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c -o ncbi_connection.o @@ -5252,12 +5262,35 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WerrIn file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:35: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - eNcbiCred_MbedTls = 0xC12CC16C - ^~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werrmake[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/compress/api TMPL=compress -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/cgi TMPL=cgi -w -j15 --jobserver-auth=7,8 all +/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-2.8.1/c++/src/cgi/.#lock-map. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/hookdata.cpp -o hookdata.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/hookdatakey.cpp -o hookdatakey.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/typeinfo.cpp -o typeinfo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objectinfo.cpp -o objectinfo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objectiter.cpp -o objectiter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objectio.cpp -o objectio.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/typeref.cpp -o typeref.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MTIn file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -5297,15 +5330,50 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro 'METACONN_LOG' METACONN_LOG(33, eLOG_Error, ^~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:37: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/compress.cpp -o compress.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream.cpp -o stream.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.cpp -o streambuf.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream_util.cpp -o stream_util.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/bzip2.cpp -o bzip2.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/zlib.cpp -o zlib.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/lzo.cpp -o lzo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILIn file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_connector.c:38: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(163, eLOG_Error, + ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:76: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + eNcbiCred_MbedTls = 0xC12CC16C + ^~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:35: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + eNcbiCred_MbedTls = 0xC12CC16C + ^~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp -o cgiapp.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgictx.cpp -o cgictx.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbires.cpp -o ncbires.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ref_args.cpp -o ref_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_run.cpp -o cgi_run.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'x_ReInit': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -5415,6 +5483,24 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:428:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_util.c:34: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_util.c: In function 'CORE_SetLOGFILE_NAME_Ex': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_util.c:153:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_ReInit': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -5440,15 +5526,7 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:450:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/compress.cpp -o compress.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream.cpp -o stream.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.cpp -o streambuf.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream_util.cpp -o stream_util.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/bzip2.cpp -o bzip2.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/zlib.cpp -o zlib.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/lzo.cpp -o lzo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FIL/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -5558,6 +5636,14 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:467:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o +/bin/rm -f libtables.so .libtables.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libtables.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libtables.so +/bin/ln -f .tables.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.tables.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_GetPosition': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -5644,53 +5730,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:508:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:77: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_DoLog': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:516:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(112, level, - ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:248:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:200:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:556:13: note: in expansion of macro 'CORE_DATAF_X' - CORE_DATAF_X(109, level, data, size, - ^~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/hookdata.cpp -o hookdata.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/hookdatakey.cpp -o hookdatakey.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/typeinfo.cpp -o typeinfo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objectinfo.cpp -o objectinfo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objectiter.cpp -o objectiter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objectio.cpp -o objectio.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/typeref.cpp -o typeref.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ @@ -5782,91 +5827,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:589:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(113, level, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:597:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:884:13: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not" - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostname': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:180:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1039:13: note: in expansion of macro 'CORE_LOG_ERRNO_EXX' - CORE_LOG_ERRNO_EXX(103, eLOG_Error, - ^~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1048:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(104, eLOG_Error, - ^~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp -o cgiapp.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgictx.cpp -o cgictx.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbires.cpp -o ncbires.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/ref_args.cpp -o ref_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_run.cpp -o cgi_run.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ @@ -5961,117 +5921,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:646:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_connector.c:38: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(163, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname_': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1188:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_getlocalhostaddress': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1227:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname': -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:36: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1255:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(155, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:115:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1420:9: note: in expansion of macro 'LOG_WRITE' - LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, - ^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr_': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1386:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1420:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(10, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'x_TryLowerSockFileno': /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 's_CONN_Write': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6164,113 +6013,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:751:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1645:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1662:9: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Critical, - ^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1694:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(3, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1710:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(4, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1544:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(111, eLOG_Trace, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Select_': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1669:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1798:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_Pushback': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6296,9 +6038,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:786:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_util.c:34: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_util.c: In function 'CORE_SetLOGFILE_NAME_Ex': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6323,21 +6062,14 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:786:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_util.c:153:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:37: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_Flush': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6408,98 +6140,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:821:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1761:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1778:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1822:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(7, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1855:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(9, eLOG_Error, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1897:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Poll_': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1942:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, - ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 's_CONN_Read': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6561,6 +6201,7 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:913:13: note: in expansion of macro 'CONN_LOG' CONN_LOG(23, Read, level, "Unable to read data"); ^~~~~~~~ +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6586,48 +6227,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:964:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.h:37, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:34: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6719,22 +6318,34 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1061:17: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:38: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_Adjust': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' + CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:115:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1080:5: note: in expansion of macro 'CONN_NOT_NULL' + CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2087:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_IsConnected_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6744,36 +6355,27 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2661:13: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Trace, - ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:368:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(2, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2671:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o -/bin/rm -f libtables.so .libtables.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libtables.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libtables.so -/bin/ln -f .tables.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.tables.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:383:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(17, eLOG_Trace, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6789,8 +6391,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' - CONN_LOG_EX(subcode, func_name, eLOG_Error, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' + CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:115:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) @@ -6810,19 +6412,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' - CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:115:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1080:5: note: in expansion of macro 'CONN_NOT_NULL' - CONN_NOT_NULL(26, Status); - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:409:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(3, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6835,18 +6427,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' - CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:115:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1119:5: note: in expansion of macro 'CONN_NOT_NULL' - CONN_NOT_NULL(27, Close); - ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:424:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(18, eLOG_Trace, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6862,8 +6446,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' - CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' + CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:115:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) @@ -6871,7 +6455,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1119:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6881,28 +6464,82 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2706:25: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Trace, - ^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Recv': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:434:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(4, eLOG_Critical, + ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/html/page.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/html/page.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/html/page.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/html/page.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:115: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbsmd.h:37, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_host_info.c:33: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2857:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' + CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:115:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1119:5: note: in expansion of macro 'CONN_NOT_NULL' + CONN_NOT_NULL(27, Close); + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -6969,6 +6606,170 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1145:9: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/html/pager.cpp:32: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: +/build/ncbi-blast+-ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/inclu2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +de/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/html/pager.cpp:32: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/html/selection.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/html/selection.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:458:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_Connect': +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible buil/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:561:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_ds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-tiLOGF_X(5, eLOG_Critical, + ^~~~~~~~~~~ +me] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7018,27 +6819,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connection.c:1166:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/html/pager.cpp:32: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:115: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7054,6 +6834,15 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:271:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7137,7 +6926,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:449:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Read_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7150,37 +6938,50 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3040:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ - -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/typemap.cpp -o typemap.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/stdtypes.cpp -o stdtypes.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/enumerated.cpp -o enumerated.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/ptrinfo.cpp -o ptrinfo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/continfo.cpp -o continfo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/stltypes.cpp -o stltypes.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/memberid.cpp -o memberid.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEF/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/html/pager.cpp:32: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:701:25: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(20, eLOG_Error, error, + ^~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.h:37, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:34: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_ConnectAndSend': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:912:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(6, eLOG_Error, error, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkHead': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1043:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(23, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Alloc': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7227,41 +7028,38 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:707:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_ReadData': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:831:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1114:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(24, eLOG_Error, error, + ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:837:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(11, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Send': -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:38: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_Adjust': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1138:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(25, eLOG_Error, error, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_ReadHeader': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7271,12 +7069,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3391:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1212:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(7, eLOG_Error, error, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7286,16 +7085,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:368:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(2, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_WriteData': -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3480:31: warning: ordered comparison of pointer with integer zero [-Wpedantic] - n_written > 0 ? " [encrypt]" : 0); - ^ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:831:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7308,9 +7103,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:383:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(17, eLOG_Trace, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:837:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(11, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7323,9 +7118,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:409:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(3, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:850:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(13, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7338,8 +7133,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:424:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(18, eLOG_Trace, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:858:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(12, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7353,24 +7148,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:434:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(4, eLOG_Critical, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:870:5: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(14, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:458:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_FreeFast': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7380,12 +7161,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:850:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(13, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:882:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7398,9 +7179,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:858:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(12, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:888:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(16, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7413,25 +7194,24 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:870:5: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(14, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_FreeFast': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1249:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(8, level, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:248:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:882:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:200:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1313:9: note: in expansion of macro 'CORE_DATAF_X' + CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, + ^~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7444,9 +7224,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:888:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(16, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1330:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(22, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7508,69 +7288,21 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:947:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(30, eLOG_Error, ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:77: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_WritePending': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:248:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3544:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(12, sock->log != eOff - ^~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbsmd.h:37, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_host_info.c:33: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_Connect': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:200:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1349:17: note: in expansion of macro 'CORE_DATAF_X' + CORE_DATAF_X(9, eLOG_Note, hdr, size, + ^~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7583,9 +7315,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:561:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(5, eLOG_Critical, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1399:25: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(10, eLOG_Critical, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7638,21 +7370,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:701:25: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(20, eLOG_Error, error, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ @@ -7686,13 +7403,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:1060:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(23, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1557:21: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7705,39 +7421,21 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3717:21: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3754:25: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:1060:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(23, eLOG_Error, + ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:36: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3805:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:115:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1420:9: note: in expansion of macro 'LOG_WRITE' + LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, + ^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7798,22 +7496,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:1191:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(24, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_ConnectAndSend': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:912:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(6, eLOG_Error, error, - ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Walk': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7846,67 +7528,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c:1310:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(33, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Close_': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/srIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/html/page.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/html/page.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/html/page.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/html/page.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApc/connect/ncbi_socket.c:3882:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3898:21: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7916,18 +7537,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -bi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3961:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:42: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c: In function 'x_ServiceName': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1575:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(11, eLOG_Error, error, + ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7940,10 +7555,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:86:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(7, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkHead': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1630:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(19, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -7956,71 +7570,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1043:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(23, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_ReadData': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1114:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(24, eLOG_Error, error, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1138:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(25, eLOG_Error, error, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4007:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Connect_': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4117:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(131, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1635:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8033,10 +7585,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:95:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(8, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c: In function 'x_Open': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1646:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(13, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8046,28 +7598,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:348:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_ReadHeader': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1212:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(7, eLOG_Error, error, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1645:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8077,12 +7613,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1249:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(8, level, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1662:9: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Critical, + ^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8095,9 +7631,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:200:5: note: in expansion of macro 'DO_CORE_LOG_DATA' DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1313:9: note: in expansion of macro 'CORE_DATAF_X' - CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, - ^~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1654:17: note: in expansion of macro 'CORE_DATAF_X' + CORE_DATAF_X(14, eLOG_Note, s, n, + ^~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8110,9 +7646,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1330:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(22, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1663:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(15, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8125,9 +7661,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4136:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(142, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1694:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(3, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8140,24 +7676,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4161:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(22, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4187:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(23, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1710:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(4, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8167,12 +7688,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4249:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1761:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, + ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8182,12 +7703,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4260:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1778:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, + ^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.h:37, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c:36: @@ -8197,36 +7718,7 @@ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4327:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(25, sock->log != eOff - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:248:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:200:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1349:17: note: in expansion of macro 'CORE_DATAF_X' - CORE_DATAF_X(9, eLOG_Note, hdr, size, - ^~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_Read': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8239,40 +7731,40 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1399:25: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(10, eLOG_Critical, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1834:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(16, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4371:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(26, sock->log != eOff - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Create': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1877:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(21, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4457:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1822:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(7, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8282,12 +7774,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1557:21: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1855:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(9, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8300,10 +7792,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1575:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(11, eLOG_Error, error, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connutil.c:1897:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:77: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_DoLog': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8316,8 +7810,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4514:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(47, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:516:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(112, level, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8325,15 +7819,18 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:248:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4565:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(148, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:200:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:556:13: note: in expansion of macro 'CORE_DATAF_X' + CORE_DATAF_X(109, level, data, size, + ^~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:42: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c: In function 'x_ServiceName': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8346,39 +7843,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4609:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(48, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4667:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(50, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4680:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:86:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(7, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8391,9 +7858,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1630:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(19, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:95:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(8, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8406,9 +7873,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1635:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:589:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(113, level, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8421,24 +7888,26 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1646:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(13, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:597:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:248:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:200:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1654:17: note: in expansion of macro 'CORE_DATAF_X' - CORE_DATAF_X(14, eLOG_Note, s, n, - ^~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:884:13: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not" + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_VT_Write': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8451,39 +7920,26 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1663:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(15, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4730:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(132, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:2116:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(24, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c: In function 'x_Open': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4766:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c:348:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostname': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8493,27 +7949,28 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:180:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4777:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1039:13: note: in expansion of macro 'CORE_LOG_ERRNO_EXX' + CORE_LOG_ERRNO_EXX(103, eLOG_Error, + ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4797:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1048:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(104, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8526,26 +7983,18 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4812:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_Read': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1834:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(16, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1188:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_getlocalhostaddress': +or=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c -o ncbi_service.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wd/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -8557,21 +8006,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:1877:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(21, eLOG_Warning, - ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/html/selection.cpp:31: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1227:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8584,9 +8022,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4874:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(144, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1255:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(155, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8599,32 +8038,26 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4916:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(34, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1386:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4962:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(35, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ -or=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service.c -o ncbi_service.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wd/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c: In function 's_VT_Write': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1420:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(10, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'x_TryLowerSockFileno': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8637,38 +8070,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_connector.c:2116:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(24, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/html/selection.cpp:31: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c:38: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1544:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(111, eLOG_Trace, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Select_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8678,12 +8083,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5017:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1669:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8696,9 +8101,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5038:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(150, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1798:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Poll_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8708,12 +8114,15 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5108:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(37, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:1942:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, + ^~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c:38: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8726,25 +8135,25 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5175:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(115, eLOG_Note, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c:204:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Accept': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5224:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(39, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2087:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_IsConnected_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8754,12 +8163,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_dispd.c:204:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(5, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2661:13: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Trace, + ^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8772,24 +8181,25 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5280:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(40, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2671:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5339:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(41, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2706:25: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Trace, + ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Recv': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8802,9 +8212,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5396:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:2857:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Read_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8814,12 +8225,80 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5407:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3040:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objectiter.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objectiter.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:36: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/compress.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Send': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8832,9 +8311,16 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5418:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3391:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_WriteData': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3480:31: warning: ordered comparison of pointer with integer zero [-Wpedantic] + n_written > 0 ? " [encrypt]" : 0); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:77: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_WritePending': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8847,42 +8333,17 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5438:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5490:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(44, eLOG_Note, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5520:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(45, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3544:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/compress.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgir.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgir.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -8903,7 +8364,7 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8916,9 +8377,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5602:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(20, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3717:21: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8931,10 +8392,20 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5651:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3754:25: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgir.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgir.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -8944,57 +8415,28 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5686:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5703:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(88, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5712:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(89, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3805:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Close_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5762:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(90, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3882:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9007,18 +8449,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5808:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, - ^~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:36: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3898:21: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9028,12 +8461,36 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5851:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:3961:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/bzip2.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/bzip2.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9043,12 +8500,37 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5861:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4007:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Connect_': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9058,27 +8540,64 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5873:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4117:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(131, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5883:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4136:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(142, eLOG_Error, + ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/ptrinfo.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/ptrinfo.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9091,10 +8610,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5902:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(116, eLOG_Note, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4161:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:35: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_OpenDispatcher': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9107,9 +8628,18 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5964:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(117, eLOG_Note, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:102:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:177:49: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] + if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 + ~^ ~~ + %n +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:178:51: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] + || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 + ~^ ~~ + %n In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, @@ -9117,11 +8647,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgictx.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbires.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: wIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/serial/typeref.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + arning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9144,123 +8685,93 @@ from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgictx.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbires.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/serial/typeref.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6175:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(46, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Reconnect': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6355:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(52, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6365:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(53, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6377:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(51, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6410:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(54, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4187:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(23, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6417:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(55, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4249:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6425:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(15, eLOG_Error, - ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream_util.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream_util.cpp:31: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4260:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_session.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9281,10 +8792,20 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_session.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/bzip2.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/bzip2.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/zlib.hpp:54, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9305,10 +8826,12 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.cpp:33: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/reader_zlib.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/reader_zlib.cpp:31: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9329,22 +8852,48 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/reader_zlib.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/reader_zlib.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6565:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(56, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4327:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(25, sock->log != eOff + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4371:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(26, sock->log != eOff + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:34: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c: In function 's_SendRcpt': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9357,9 +8906,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6593:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(57, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:416:13: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(3, "Recipient address is too long"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9372,12 +8924,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6607:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(58, eLOG_Warning, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:419:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:35: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_OpenDispatcher': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_Open': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9390,18 +8942,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:102:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(5, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:177:49: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] - if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 - ~^ ~~ - %n -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:178:51: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] - || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 - ~^ ~~ - %n +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:891:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(4, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9414,9 +8957,46 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6621:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(59, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:917:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(9, eLOG_Warning, + ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/typeinfo.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/typeinfo.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9429,9 +9009,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6630:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(60, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:427:13: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(4, write_error); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9444,29 +9027,32 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6640:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(61, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:431:13: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(5, proto_error, buf); + ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Create': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6650:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(62, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4457:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/tar.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp:54: + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/zlib.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9489,20 +9075,15 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/tar.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp:54: + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/zlib.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c: In function 'CORE_SendMailEx': In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgir.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgir.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9524,60 +9105,12 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgir.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgir.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbires.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6780:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(63, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetTimeout': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6821:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(64, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_VT_Open': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9590,8 +9123,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6863:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(65, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:1110:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9605,27 +9138,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6873:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(66, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:1122:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(10, eLOG_Error, ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:35: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_Open': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:891:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(4, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9638,27 +9154,35 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:917:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(9, eLOG_Warning, - ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:50: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPCloseData': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4514:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(47, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:145:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(7, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4565:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(148, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_serial.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_serial.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -9668,34 +9192,7 @@ CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-b/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:150:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(9, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:164:17: note: ilast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -9708,18 +9205,36 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbires.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_serial.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_serial.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -n expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(11, eLOG_Warning, - ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:34: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c: In function 's_SendRcpt': +In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9735,24 +9250,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:416:13: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(3, "Recipient address is too long"); - ^~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:419:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:486:9: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(6, "SSendMailInfo inited improperly: Invalid magic"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9768,10 +9268,42 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:427:13: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(4, write_error); - ^~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:491:9: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(7, "At least one message recipient must be specified"); + ^~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9784,25 +9316,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6904:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(125, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c: In function 's_VT_Open': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:1110:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(6, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:501:9: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); + ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9815,12 +9334,18 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_connector.c:1122:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(10, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4609:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(48, eLOG_Error, + ^~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgiapp.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_run.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9842,7 +9367,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgiapp.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_run.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -9853,67 +9384,69 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:431:13: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(5, proto_error, buf); - ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4667:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(50, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:168:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(8, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4680:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:185:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c: In function 'CORE_SendMailEx': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4730:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(132, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:486:9: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(6, "SSendMailInfo inited improperly: Invalid magic"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4766:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9926,28 +9459,27 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:491:9: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(7, "At least one message recipient must be specified"); - ^~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPReply': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:508:9: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); + ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:293:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(10, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4777:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9960,13 +9492,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:501:9: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPCommandEx': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:513:9: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(10, "Unable to get local host name"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9979,9 +9510,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:376:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(4, eLOG_Trace, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:518:9: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(11, "Write error in HELO command"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -9997,8 +9531,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:508:9: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10015,10 +9549,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:513:9: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(10, "Unable to get local host name"); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:526:9: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(13, "Write error in MAIL command"); ^~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10031,10 +9564,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6980:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(67, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:529:9: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); + ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10047,25 +9582,43 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7032:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(68, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:550:9: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(15, "Write error in DATA command"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7059:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(69, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPLogin': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4797:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4812:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10078,21 +9631,19 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/nIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4874:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(144, eLOG_Error, + ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgiapp.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_run.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - cbi_ftp_connector.c:609:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(3, eLOG_Trace, - ^~~~~~~~~~~ - ^ + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -10111,13 +9662,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgiapp.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_run.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -10128,18 +9677,30 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:518:9: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(11, "Write error in HELO command"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4916:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(34, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:4962:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(35, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10155,8 +9716,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:552:9: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10173,9 +9734,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:526:9: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(13, "Write error in MAIL command"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:583:21: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(32, "Write error in sending Date"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10188,12 +9749,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:529:9: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); - ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:590:21: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(33, "Write error in sending From"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10209,9 +9770,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:550:9: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(15, "Write error in DATA command"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:598:17: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(17, "Write error in sending Subject"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10224,34 +9785,154 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:552:9: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); - ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:605:17: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(18, "Write error in sending To"); + ^~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objectio.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5017:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:583:21: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(32, "Write error in sending Date"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5038:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(150, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRC const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objectio.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +ODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5108:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(37, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/tar.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp:54: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/lzo.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/lzo.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/streambuf.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream_util.hpp:49, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/stream_util.cpp:31: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -10272,6 +9953,81 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/impl/cgi_entry_reader.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_entry_reader.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/impl/cgi_entry_reader.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_entry_reader.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_store.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp_cached.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/util/cache/cache_ref.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp:43: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10284,10 +10040,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7069:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(70, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:612:17: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(19, "Write error in sending Cc"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10297,12 +10055,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7088:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(71, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:616:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(2, eLOG_Warning, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10315,29 +10073,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7095:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(72, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/util/compress/compress.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/stream.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/zlib.hpp:54, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME_/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:627:9: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(20, "Write error in sending mailer information"); + ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -10352,9 +10094,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:590:21: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(33, "Write error in sending From"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:655:17: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(21, "Write error while sending custom header"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10367,22 +10109,17 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:598:17: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(17, "Write error in sending Subject"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:664:13: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(22, error, buffer); + ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; _" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - \ + _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) @@ -10393,9 +10130,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:605:17: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(18, "Write error in sending To"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:667:13: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(23, "Write error in finalizing custom header"); + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10411,8 +10148,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:612:17: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(19, "Write error in sending Cc"); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:676:17: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10423,13 +10160,25 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:616:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(2, eLOG_Warning, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:702:17: note: in expansion of macro 'SENDMAIL_RETURN' + SENDMAIL_RETURN(25, "Write error while sending message body"); + ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuild/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -10441,12 +10190,21 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5175:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(115, Info& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_exception.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_exception.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + eLOG_Note, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:627:9: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(20, "Write error in sending mailer information"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_Accept': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10459,18 +10217,7 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:655:17: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(21, "Write error while sending custom header"); - ^~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_store.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp_cached.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ +/build/ncbi-blast+- ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -10489,23 +10236,41 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_store.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp_cached.cpp:33: + 2.8.1/c++/src/connect/ncbi_socket.c:5224:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(39, eLOG_Error, + ^~~~~~~~~~~ + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_exception.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_exception.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/cgi/user_agent.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/user_agent.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_serial.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_serial.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -10527,120 +10292,108 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_serial.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_serial.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/compress/tar.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp:54: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPPassive': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:969:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(2, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - _mess.func = CORE_CURRENT_FUNCTION; \ - ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:1131:21: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(5, eLOG_Error, - ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:664:13: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(22, error, buffer); - ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5280:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(40, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:667:13: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(23, "Write error in finalizing custom header"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5339:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXXIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_store.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp_cached.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +' + CORE_LOGF_ERRNO_EXX(41, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:676:17: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(24, "Write error in message body delimiter"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5396:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:702:17: note: in expansion of macro 'SENDMAIL_RETURN' - SENDMAIL_RETURN(25, "Write error while sending message body"); - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5407:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/util/cache/cache_ref.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp:43: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10695,15 +10448,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:718:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(28, "Write error while finalizing message"); ^~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10746,35 +10490,31 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(subcode, eLOG_Error, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:728:9: note: in expansion of macro 'SENDMAIL_RETURN2' - SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetOSHandleEx': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5418:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7242:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(73, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetCork': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5438:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10787,9 +10527,49 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7304:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(158, eLOG_Warning, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5490:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(44, eLOG_Note, ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:50: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPCloseData': +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/enumerated.cpp:39: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/enumerated.cpp:39: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10802,9 +10582,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7311:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(159, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:365:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c:728:9: note: in expansion of macro 'SENDMAIL_RETURN2' + SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); + ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10817,15 +10600,16 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7324:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_DisableOSSendDelay': -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/util/cache/cache_ref.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp:43: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5520:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(45, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/autoptrinfo.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -10846,7 +10630,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPPollCntl': +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/autoptrinfo.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10859,8 +10652,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:1662:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:145:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10874,9 +10667,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7341:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(156, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:150:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(9, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10889,9 +10683,70 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7348:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(157, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5602:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(20, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:164:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(11, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:168:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(8, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:185:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPReply': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:293:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(10, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10904,10 +10759,22 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7361:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_CreateEx': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5651:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgiapp.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/user_agent.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10917,23 +10784,82 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7412:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(76, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5686:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5703:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(88, eLOG_Error, + ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/serial/stltypes.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_session.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgictx.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5712:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(89, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5762:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(90, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -10951,28 +10877,18 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_session.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/util/cache/cache_ref.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp:43: + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/serial/stltypes.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Open': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPCommandEx': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -10985,9 +10901,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:1933:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(13, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:376:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(4, eLOG_Trace, + ^~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.h:35, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.c:32: @@ -10997,14 +10913,6 @@ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/zlib.cpp:40: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -11022,28 +10930,48 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/zlib.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgictx.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Bind': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7532:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(79, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5808:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5851:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPLogin': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11056,8 +10984,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7539:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(78, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:609:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(3, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11068,12 +10996,22 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7557:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE - ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5861:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X'In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ref_args.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ + + CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, + ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11083,13 +11021,63 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7573:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(114, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Connect': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5873:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5883:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, + ^~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_util.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_util.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPPassive': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11102,10 +11090,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7602:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(82, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:969:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Write': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11118,16 +11105,41 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:2008:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(6, eLOG_Error, - ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/lzo.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5902:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(116, eLOG_Note, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:5964:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(117, eLOG_Note, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:1131:21: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(5, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -11146,19 +11158,40 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/lzo.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/cgi/ref_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6175:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(46, eLOG_Error, + ^~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/continfo.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objcopy.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stdtypesimpl.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objectinfo.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -11183,12 +11216,15 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/continfo.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objcopy.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stdtypesimpl.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objectinfo.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Reconnect': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11201,8 +11237,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7609:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(81, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6355:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(52, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11216,8 +11252,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7628:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(83, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6365:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(53, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11231,10 +11267,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7641:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(84, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_CreateConnector': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6377:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(51, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11244,69 +11280,27 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:2318:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6410:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(54, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7670:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(85, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/serial/typeref.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/serial/typeref.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6417:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(55, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11319,9 +11313,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7698:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(96, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6425:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPPollCntl': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11334,10 +11329,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7705:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(95, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_RecvMsg': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:1662:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Open': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11350,9 +11345,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7744:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(93, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:1933:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Write': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11365,10 +11361,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7751:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(92, eLOG_Error, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SendMsg': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:2008:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(6, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11381,9 +11377,18 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7788:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(87, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6565:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(56, eLOG_Error, ^~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.h:35, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_local.c:36: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11396,20 +11401,101 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7795:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(86, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6593:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(57, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6607:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(58, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6621:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(59, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6630:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(60, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6640:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(61, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6650:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(62, eLOG_Error, ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/autoptrinfo.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-t/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WipeMsg': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c: In function 's_CreateConnector': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c:2318:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11422,50 +11508,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ime] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/autoptrinfo.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/serial/stltypes.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDIsocket.c:7827:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(98, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6780:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(63, eLOG_Error, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetTimeout': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11478,19 +11524,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blNFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "ast+-2.8.1/c++/src/connect/ncbi_socket.c:7834:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(97, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6821:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(64, eLOG_Error, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11501,54 +11538,27 @@ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7854:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(99, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6863:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(65, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6873:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(66, eLOG_Error, ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SetBroadcast': - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/serial/stltypes.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11561,9 +11571,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7872:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(101, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6904:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(125, eLOG_Error, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11576,324 +11587,40 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7879:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(100, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:6980:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(67, eLOG_Error, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7899:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(102, eLOG_Error, - ^~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetReuseAddress': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7032:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(68, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive_.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/archive.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -2.8.1/c++/src/connect/ncbi_socket.c:8061:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, - ^~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objectio.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/typeinfo.cpp:38: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/typeinfo.cpp:38: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ref_args.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/ref_args.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_exception.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_exception.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_exception.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_exception.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objectio.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objectiter.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objectiter.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/reader_zlib.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/reader_zlib.cpp:31: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/compress/reader_zlib.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/reader_zlib.cpp:31: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/cgi/user_agent.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/user_agent.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetupSSLInternal': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7059:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(69, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -11903,222 +11630,43 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:8446:13: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); - ^~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/enumerated.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/enumerated.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbires.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgiapp.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/user_agent.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_util.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_util.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.h:35, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_local.c:36: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/impl/cgi_entry_reader.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_entry_reader.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_url.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/ncbi_url.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/cgi_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/ncbicgi.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/cgi/impl/cgi_entry_reader.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_entry_reader.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/ptrinfo.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/ptrinfo.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objcopy.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stdtypesimpl.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objectinfo.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objcopy.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stdtypesimpl.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objectinfo.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7069:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(70, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7088:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(71, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7095:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(72, eLOG_Error, + ^~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -12160,25 +11708,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbosp.h:37, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:37: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ -ate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.c -o ncbi_lb.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_local.c -o ncbi_local.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_base64.c -o ncbi_base64.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_version.c -o ncbi_version.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:38: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringConcat': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetOSHandleEx': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12188,13 +11718,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:431:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringNConcat': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7242:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(73, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetCork': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12204,13 +11734,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:456:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_RegGet': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7304:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(158, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12220,28 +11749,28 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:480:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7311:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(159, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:494:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_GetLBOSAddressEx': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7324:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_DisableOSSendDelay': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12251,12 +11780,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:562:5: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7341:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(156, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12266,12 +11795,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:576:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(1, eLOG_Error, "Use of custom LBOS address " - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7348:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(157, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12281,12 +11810,29 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:164:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:583:17: note: in expansion of macro 'CORE_LOG_ERRNO_X' - CORE_LOG_ERRNO_X(1, eLOG_Warning, errno, - ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7361:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_CreateEx': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7412:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(76, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Bind': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12299,9 +11845,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:591:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7532:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(79, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12314,10 +11860,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:602:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Note, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ReadLbosresolver': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7539:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(78, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12327,12 +11872,21 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:176:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:721:9: note: in expansion of macro 'CORE_LOGF_ERRNO' - CORE_LOGF_ERRNO(eLOG_Warning, errno, - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7557:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE + ^~~~~~~~~~~~~~~~~~~ +-I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o +/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libcomposition_adjustment.so +/bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.composition_adjustment.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12342,12 +11896,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:176:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:730:9: note: in expansion of macro 'CORE_LOGF_ERRNO' - CORE_LOGF_ERRNO(eLOG_Warning, errno, - ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7573:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(114, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Connect': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12357,13 +11912,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Warning, - ^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConnectURL': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7602:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(82, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12373,12 +11927,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:823:5: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Trace, ("Parsing URL \"%s\"", url)); - ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7609:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(81, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12388,12 +11942,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:825:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Cannot parse URL"); - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7628:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(83, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12403,27 +11957,28 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:828:5: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Trace, ("Creating HTTP%s connector", - ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7641:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(84, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:835:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7670:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(85, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12433,12 +11988,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:838:5: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Trace, "Creating connection"); - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7698:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(96, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12448,13 +12003,14 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:840:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Cannot create connection"); - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_UrlReadAll': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7705:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(95, eLOG_Error, + ^~~~~~~~~~~ +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_RecvMsg': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12464,12 +12020,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:899:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7744:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(93, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12479,12 +12035,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:911:13: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " - ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7751:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(92, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SendMsg': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12494,12 +12051,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:939:17: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7788:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(87, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12509,13 +12066,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:953:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ResolveIPPort': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7795:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(86, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WipeMsg': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12525,12 +12082,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:985:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7827:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(98, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12540,13 +12097,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1044:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_FillCandidates': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7834:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(97, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12559,9 +12115,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7854:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(99, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SetBroadcast': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12574,8 +12131,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1200:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Trace, ("No servers of \"%s\" found by LBOS", +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7872:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(101, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12589,9 +12146,84 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1205:5: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7879:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(100, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:7899:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(102, eLOG_Error, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetReuseAddress': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:8061:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetupSSLInternal': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket.c:8446:13: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); + ^~~~~~~~ +ate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.c -o ncbi_lb.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_local.c -o ncbi_local.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_base64.c -o ncbi_base64.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_version.c -o ncbi_version.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbosp.h:37, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:37: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.h:35, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:36: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:38: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringConcat': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12601,13 +12233,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1218:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckAnnounceArgs': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:431:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringNConcat': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12617,12 +12249,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1248:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Error with announcement, " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:456:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_RegGet': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12632,12 +12265,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1255:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:480:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12647,12 +12280,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1265:17: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Error with announcement, " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:494:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_GetLBOSAddressEx': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12665,9 +12299,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1275:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Error with announcement, invalid port."); - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:562:5: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12677,12 +12311,27 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1279:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Error with announcement, " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:576:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(1, eLOG_Error, "Use of custom LBOS address " + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:164:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:583:17: note: in expansion of macro 'CORE_LOG_ERRNO_X' + CORE_LOG_ERRNO_X(1, eLOG_Warning, errno, + ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12692,12 +12341,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1284:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Error with announcement, " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:591:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12707,13 +12356,43 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1289:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Error with announcement, " - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckDeannounceArgs': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:602:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Note, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ReadLbosresolver': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:176:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:721:9: note: in expansion of macro 'CORE_LOGF_ERRNO' + CORE_LOGF_ERRNO(eLOG_Warning, errno, + ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:176:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:730:9: note: in expansion of macro 'CORE_LOGF_ERRNO' + CORE_LOGF_ERRNO(eLOG_Warning, errno, + ^~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12723,12 +12402,15 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Warning, + ^~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:40: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_SetEndpoint': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12738,21 +12420,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1309:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - ^~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.h:35, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:36: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:208:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12762,12 +12435,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1314:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:215:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12777,13 +12450,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1319:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Replace0000WithIP': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:226:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12793,21 +12465,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1404:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " - ^~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.h:35, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:36: -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_IncludePrivate = 0x80000000, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:237:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12817,12 +12480,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1412:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:248:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNetInfo': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12832,13 +12496,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1419:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConstructData': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:285:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Warning, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12851,10 +12514,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1563:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:292:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Initialize': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromRegistry': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12867,8 +12530,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1638:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:313:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12879,12 +12542,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1640:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Trace, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:322:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12894,13 +12557,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1654:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(1, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ParseHeader': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:331:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12910,13 +12572,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1702:9: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " - ^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Reset': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:340:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12926,13 +12587,22 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(0, 0, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1765:17: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'SERV_LBOS_Open': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:349:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_servicep.h:38, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lb.h:35, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:36: +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_IncludePrivate = 0x80000000, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConnectURL': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12942,12 +12612,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1868:5: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Error, "LBOS is deprecated, consider using LBSMD instead."); - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:823:5: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Trace, ("Parsing URL \"%s\"", url)); + ^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12960,8 +12630,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1880:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:825:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Cannot parse URL"); ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12972,12 +12642,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1888:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:828:5: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Trace, ("Creating HTTP%s connector", + ^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -12990,9 +12660,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1903:13: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:835:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13005,9 +12675,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1918:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:838:5: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Trace, "Creating connection"); + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13020,10 +12690,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1932:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:840:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Cannot create connection"); ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Announce': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_UrlReadAll': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13036,8 +12706,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2047:9: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:899:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13051,9 +12721,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2052:9: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Warning, ("Announce failed. " - ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:911:13: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " + ^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13066,9 +12736,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2061:13: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:939:17: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13081,9 +12751,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2071:13: note: in expansion of macro 'CORE_LOG' - CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " - ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:953:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ResolveIPPort': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13093,13 +12764,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2084:9: note: in expansion of macro 'CORE_LOGF' - CORE_LOGF(eLOG_Warning, ("Announce failed. " - ^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Announce': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:985:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13112,10 +12782,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2150:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:367:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Warning, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_AnnounceFromRegistry': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13125,19 +12794,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2219:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2226:53: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] - if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || - ~^ ~~~~~ - %d -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:38: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Deannounce': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:373:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNamerd': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13150,10 +12813,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2341:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_DeannounceAll': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:396:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13166,10 +12828,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2399:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:405:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckConfArgs': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13182,9 +12843,25 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2451:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:416:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:425:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_Resolve': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13197,10 +12874,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2458:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_ServiceVersionSet': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:467:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13210,15 +12886,43 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1044:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_FillCandidates': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2550:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:40: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_Init': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1200:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Trace, ("No servers of \"%s\" found by LBOS", + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13231,10 +12935,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:285:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Libc, eLOG_Error, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Create': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:493:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13247,9 +12950,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:306:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Connect, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:506:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eLSub_BadData, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_GetNextInfo': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13262,10 +12966,25 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:315:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Connect, eLOG_Error, "Unable to create connector."); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:549:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Warning, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 'LINKERD_GetHttpProxy': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:608:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Critical, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtab': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13278,10 +12997,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:383:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't alloc for dtab."); +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:615:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Critical, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetReqMethod': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13294,10 +13012,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:403:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:622:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Critical, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetScheme': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13310,12 +13027,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:425:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:629:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Critical, ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:40: -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_SetEndpoint': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13328,9 +13042,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:208:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:638:5: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eLSub_Message, eLOG_Info, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 'SERV_LINKERD_Open': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13343,7 +13058,7 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:215:13: note: in expansion of macro 'CORE_LOG_X' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:660:13: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(eLSub_BadData, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -13355,12 +13070,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:226:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:673:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13373,7 +13088,7 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:237:13: note: in expansion of macro 'CORE_LOG_X' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:681:13: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(eLSub_BadData, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -13388,10 +13103,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:248:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:691:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNetInfo': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13404,9 +13118,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:285:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Warning, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:699:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Alloc, eLOG_Critical, "Couldn't clone net_info."); + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13419,10 +13133,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:292:9: note: in expansion of macro 'CORE_LOG_X' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:708:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(eLSub_BadData, eLOG_Error, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromRegistry': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13435,10 +13148,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:313:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:716:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetHttpProxy': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13451,8 +13163,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:446:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_BadData, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:725:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13466,9 +13178,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:457:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:736:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13481,10 +13193,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:468:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:746:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, "No endpoint data found."); ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_AddServerInfo': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13497,10 +13208,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:554:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ParseExpires': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:766:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Message, eLOG_Info, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13510,12 +13220,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:605:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:770:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Message, eLOG_Info, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13525,12 +13235,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:650:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:776:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_Message, eLOG_Info, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13540,12 +13250,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:671:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:778:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13558,8 +13268,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:322:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:794:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLSub_BadData, eLOG_Warning, "Unable to resolve endpoint."); ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13570,12 +13280,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:331:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1205:5: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13585,12 +13295,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:340:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1218:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckAnnounceArgs': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13600,12 +13311,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:349:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1248:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Error with announcement, " + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13615,12 +13326,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:367:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Warning, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1255:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13630,13 +13341,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:373:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNamerd': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1265:17: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Error with announcement, " + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13646,12 +13356,165 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:396:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1275:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Error with announcement, invalid port."); + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1279:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Error with announcement, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1284:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Error with announcement, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1289:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Error with announcement, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckDeannounceArgs': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1309:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1314:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1319:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Replace0000WithIP': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1404:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1412:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1419:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConstructData': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13664,9 +13527,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:405:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1563:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Initialize': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13679,10 +13543,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:416:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1638:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ReadFullResponse': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13692,12 +13555,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:718:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1640:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Trace, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13710,9 +13573,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:752:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_HttpRead, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1654:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(1, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ParseHeader': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13722,13 +13586,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:772:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Insufficient buffer size."); - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ParseResponse': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1702:9: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " + ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Reset': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13738,12 +13602,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:815:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1765:17: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'SERV_LBOS_Open': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13753,12 +13618,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:820:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1868:5: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Error, "LBOS is deprecated, consider using LBSMD instead."); + ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13768,12 +13633,149 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:826:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1880:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1888:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1903:13: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1918:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:1932:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Critical, + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Announce': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2047:9: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2052:9: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Warning, ("Announce failed. " + ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2061:13: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2071:13: note: in expansion of macro 'CORE_LOG' + CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:160:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(0, 0, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2084:9: note: in expansion of macro 'CORE_LOGF' + CORE_LOGF(eLOG_Warning, ("Announce failed. " + ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Announce': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13786,9 +13788,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:842:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2150:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_AnnounceFromRegistry': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13801,9 +13804,16 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:847:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_NoService, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2219:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2226:53: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] + if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || + ~^ ~~~~~ + %d +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:38: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Deannounce': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13816,9 +13826,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:855:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2341:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_DeannounceAll': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13831,9 +13842,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:902:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2399:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, + ^~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:40: +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_Init': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13846,9 +13860,25 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:910:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:285:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Libc, eLOG_Error, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Create': +/build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + _mess.func = CORE_CURRENT_FUNCTION; \ + ^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:306:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Connect, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13861,10 +13891,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:425:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:315:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Connect, eLOG_Error, "Unable to create connector."); ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_Resolve': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtab': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13874,12 +13904,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:467:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eLSub_Alloc, eLOG_Critical, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:383:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't alloc for dtab."); + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetReqMethod': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13892,9 +13923,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:493:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:403:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckConfArgs': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13904,13 +13936,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:506:9: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eLSub_BadData, eLOG_Warning, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 's_GetNextInfo': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2451:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13920,13 +13951,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:549:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Warning, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 'LINKERD_GetHttpProxy': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2458:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c: In function 'LBOS_ServiceVersionSet': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13939,9 +13970,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:608:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos.c:2550:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetScheme': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13954,9 +13986,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:615:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Critical, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:425:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetHttpProxy': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13969,9 +14002,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:622:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:446:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_BadData, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13984,9 +14017,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:923:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:457:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -13996,12 +14029,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:929:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:468:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_AddServerInfo': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14011,12 +14045,13 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:943:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:554:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ParseExpires': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14029,9 +14064,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:969:21: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:605:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14041,12 +14076,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:994:21: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:650:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14059,9 +14094,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1004:21: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:671:9: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ReadFullResponse': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14071,12 +14107,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1021:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:718:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14089,9 +14125,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1044:21: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_Json, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:752:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_HttpRead, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14104,9 +14140,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1063:21: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:772:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Insufficient buffer size."); + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ParseResponse': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14119,9 +14156,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1069:21: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Json, eLOG_Warning, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:815:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14134,9 +14171,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:629:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:820:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14146,13 +14183,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:638:5: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eLSub_Message, eLOG_Info, - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c: In function 'SERV_LINKERD_Open': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:826:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14165,8 +14201,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:660:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:842:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14180,8 +14216,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:673:13: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eLSub_BadData, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:847:13: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_NoService, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14195,8 +14231,8 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:681:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:855:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14210,9 +14246,16 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:691:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:902:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/parson.c: In function 'remove_comments': +/build/ncbi-blast+-2.8.1/c++/src/connect/parson.c:281:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] + for (i = 0; i < (ptr - string) + end_token_len; i++) + ^~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' + string = ptr + end_token_len - 1; + ^~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14225,9 +14268,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:699:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Alloc, eLOG_Critical, "Couldn't clone net_info."); - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:910:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14240,9 +14283,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:708:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:923:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14252,12 +14295,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:716:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:929:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14267,12 +14310,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:725:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:943:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14282,12 +14325,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:736:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:969:21: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14300,9 +14343,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1087:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:994:21: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14315,9 +14358,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1104:17: note: in expansion of macro 'CORE_LOGF_X' - CORE_LOGF_X(eNSub_BadData, eLOG_Warning, - ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1004:21: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14327,13 +14370,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1117:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetDtabHeaderFromBuf': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1021:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14343,13 +14385,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1160:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtabFromRegistry': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1044:21: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_Json, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14362,10 +14403,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1221:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ProcessDtab': +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1063:21: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Error, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14378,9 +14418,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1262:13: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Dtab too long."); - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1069:21: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Json, eLOG_Warning, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14393,9 +14433,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:746:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, "No endpoint data found."); - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1087:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14405,12 +14445,12 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:766:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Message, eLOG_Info, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1104:17: note: in expansion of macro 'CORE_LOGF_X' + CORE_LOGF_X(eNSub_BadData, eLOG_Warning, + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14423,9 +14463,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:770:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Message, eLOG_Info, +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1117:17: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_GetDtabHeaderFromBuf': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14438,9 +14479,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:776:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_Message, eLOG_Info, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1160:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtabFromRegistry': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14453,9 +14495,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:778:17: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Error, - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1221:9: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ProcessDtab': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^~~~~~~~~~~~~~~~~~~ @@ -14468,9 +14511,9 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_linkerd.c:794:9: note: in expansion of macro 'CORE_LOG_X' - CORE_LOG_X(eLSub_BadData, eLOG_Warning, "Unable to resolve endpoint."); - ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1262:13: note: in expansion of macro 'CORE_LOG_X' + CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Dtab too long."); + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 'SERV_NAMERD_Open': /build/ncbi-blast+-2.8.1/c++/include/connect/ncbi_util.h:142:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14577,13 +14620,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:1557:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(eNSub_BadData, eLOG_Critical, ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/parson.c: In function 'remove_comments': -/build/ncbi-blast+-2.8.1/c++/src/connect/parson.c:281:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] - for (i = 0; i < (ptr - string) + end_token_len; i++) - ^~~ -/build/ncbi-blast+-2.8.1/c++/src/connect/parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' - string = ptr + end_token_len - 1; - ^~~~~~ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c: In function 's_ParseResponse': /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c:669:49: warning: ':' directive writing 1 byte into a region of size between 0 and 19 [-Wformat-overflow=] sprintf(now_str, "%d-%02d-%02dT%02d:%02d:%02dZ", @@ -14600,16 +14636,7 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o -/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libcomposition_adjustment.so -/bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.composition_adjustment.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' connect/ncbi_linkerd.c -o ncbi_linkerd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/parson.c -o parson.o @@ -14618,7 +14645,16 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -In file included from /usr/include/string.h:494, + from /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:35: +In function 'strcpy', + inlined from 's_RemoveBasePairCountCommentsFromData' at /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:4422:25, + inlined from 's_ProcessAlignFileRawForMarkedIDs' at /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:4456:5, + inlined from 'ReadAlignmentFileEx2' at /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:6123:9: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:90:10: warning: '__builtin_strcpy' accessing 1 byte at offsets 0 and [0, 9223372036854775807] may overlap 1 byte at offset 0 [-Wrestrict] + return __builtin___strcpy_chk (__dest, __src, __bos (__dest)); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_core_cxx.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -14645,7 +14681,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_conn_stream.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -14740,19 +14775,49 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /usr/include/string.h:494, - from /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:35: -In function 'strcpy', - inlined from 's_RemoveBasePairCountCommentsFromData' at /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:4422:25, - inlined from 's_ProcessAlignFileRawForMarkedIDs' at /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:4456:5, - inlined from 'ReadAlignmentFileEx2' at /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c:6123:9: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:90:10: warning: '__builtin_strcpy' accessing 1 byte at offsets 0 and [0, 9223372036854775807] may overlap 1 byte at offset 0 [-Wrestrict] - return __builtin___strcpy_chk (__dest, __src, __bos (__dest)); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/message.cpp -o message.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/listener.cpp -o listener.o +/bin/rm -f libxlogging.so .libxlogging.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC message.o listener.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxlogging.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxlogging.so +/bin/ln -f .xlogging.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xlogging.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' +In file included from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp:45: +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c: In function 'ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)': +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] + for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; + ^~~ +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' + for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; + ^~~ +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)': +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:2327:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; + ^~ +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:2327:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; + ^ + -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/typemap.cpp -o typemap.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/stdtypes.cpp -o stdtypes.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/enumerated.cpp -o enumerated.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/ptrinfo.cpp -o ptrinfo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/continfo.cpp -o continfo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/stltypes.cpp -o stltypes.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/memberid.cpp -o memberid.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEF/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMajor() const': +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:91:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] + return (*((unsigned int*) &m_Stat.st_rdev) >> 16) & 0xFFFF; + ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMinor() const': +/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:107:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] + return *((unsigned int*) &m_Stat.st_rdev) & 0xFFFF; + ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_session.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -14773,13 +14838,25 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_session.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil.cpp -o sequtil.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o +/bin/rm -f libsequtil.so .libsequtil.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libsequtil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libsequtil.so +/bin/ln -f .sequtil.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.sequtil.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp: In member function 'unsigned int ncbi::CTarEntryInfo::GetMajor() const': /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp:480:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] return (*((unsigned int*) &m_Stat.orig.st_rdev) >> 16) & 0xFFFF; @@ -14788,28 +14865,57 @@ /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp:495:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] return *((unsigned int*) &m_Stat.orig.st_rdev) & 0xFFFF; ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/message.cpp -o message.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/logging/listener.cpp -o listener.o -/bin/rm -f libxlogging.so .libxlogging.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC message.o listener.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxlogging.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxlogging.so -/bin/ln -f .xlogging.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xlogging.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMajor() const': -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:91:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] - return (*((unsigned int*) &m_Stat.st_rdev) >> 16) & 0xFFFF; - ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMinor() const': -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp:107:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] - return *((unsigned int*) &m_Stat.st_rdev) & 0xFFFF; - ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_session.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_session.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp: In member function 'void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const': +/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:1676:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + catch (CStringException) { + ^~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp: In member function 'ncbi::CStringUTF8 ncbi::CCgiEntry::GetValueAsUTF8(ncbi::CCgiEntry::EOnCharsetError) const': +/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:1933:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + catch (CException) { + ^~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp: In member function 'ncbi::CTar::EStatus ncbi::CTar::x_ReadEntryInfo(bool, bool)': /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp:2384:15: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] *((unsigned int*) &m_Current.m_Stat.orig.st_rdev) = ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c -o alnread.o +/bin/rm -f libcreaders.so .libcreaders.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libcreaders.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libcreaders.so +/bin/ln -f .creaders.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.creaders.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -14851,8 +14957,9 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos_cxx.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/serial/member.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -14873,13 +14980,30 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos_cxx.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/serial/member.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/serial/member.cpp:37: +/build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp: In member function 'bool ncbi::CCgiApplication::x_ProcessVersionRequest()': +/build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp:1885:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + catch (CStringException) { + ^~~~~~~~~~~~~~~~ +onnect/ncbi_pipe.cpp -o ncbi_pipe.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -14900,27 +15024,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/serial/member.cpp:37: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -onnect/ncbi_pipe.cpp -o ncbi_pipe.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -In file included from /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp:45: -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c: In function 'ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)': -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] - for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; - ^~~ -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' - for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; - ^~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_gnutls.c:34: /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] eNcbiCred_MbedTls = 0xC12CC16C @@ -14959,21 +15072,10 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_gnutls.c:801:5: note: in expansion of macro 'CORE_LOG' CORE_LOG(eLOG_Warning, "Unavailable feature GNUTLS"); ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)': -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:2327:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; - ^~ -/build/ncbi-blast+-2.8.1/c++/src/util/compress/api/miniz/miniz.c:2327:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; - ^ In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_mbedtls.c:34: /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] eNcbiCred_MbedTls = 0xC12CC16C ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp: In member function 'void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const': -/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:1676:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - catch (CStringException) { - ^~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_priv.h:62, from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_mbedtls.c:35: /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_mbedtls.c: In function 'x_MbedTlsLogger': @@ -15039,47 +15141,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_mbedtls.c:642:9: note: in expansion of macro 'CORE_LOGF' CORE_LOGF(level, ("%s V%s (LogLevel=%d)", ^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp: In member function 'ncbi::CStringUTF8 ncbi::CCgiEntry::GetValueAsUTF8(ncbi::CCgiEntry::EOnCharsetError) const': -/build/ncbi-blast+-2.8.1/c++/src/cgi/ncbicgi.cpp:1933:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - catch (CException) { - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/classinfo.cpp:38: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/classinfo.cpp:38: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_tls.c:34: /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] eNcbiCred_MbedTls = 0xC12CC16C @@ -15149,33 +15210,6 @@ /build/ncbi-blast+-2.8.1/c++/src/connect/ncbi_tls.c:97:13: note: in expansion of macro 'CORE_LOG' CORE_LOG(eLOG_Critical, "No TLS support included in this build"); ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp: In member function 'bool ncbi::CCgiApplication::x_ProcessVersionRequest()': -/build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp.cpp:1885:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - catch (CStringException) { - ^~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil.cpp -o sequtil.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o -/bin/rm -f libsequtil.so .libsequtil.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libsequtil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libsequtil.so -/bin/ln -f .sequtil.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.sequtil.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/creaders/alnread.c -o alnread.o -/bin/rm -f libcreaders.so .libcreaders.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libcreaders.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libcreaders.so -/bin/ln -f .creaders.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.creaders.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -15213,21 +15247,13 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -ILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/memberlist.cpp -o memberlist.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/item.cpp -o item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/classinfob.cpp -o classinfob.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/member.cpp -o member.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/classinfo.cpp -o classinfo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/variant.cpp -o variant.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/choice.cpp -o choice.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/choiceptr.cpp -o choiceptr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/choiceptr.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15252,19 +15278,23 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/choiceptr.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +ILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/memberlist.cpp -o memberlist.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/item.cpp -o item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/classinfob.cpp -o classinfob.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/member.cpp -o member.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/classinfo.cpp -o classinfo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/variant.cpp -o variant.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/choice.cpp -o choice.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/choiceptr.cpp -o choiceptr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/choice.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/serial/objistr.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15286,11 +15316,7 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/choice.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/serial/objistr.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15301,7 +15327,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/aliasinfo.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/serial/choiceptr.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15327,14 +15353,18 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/aliasinfo.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/serial/choiceptr.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objistr.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/aliasinfo.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15356,7 +15386,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objistr.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/aliasinfo.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15507,43 +15541,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/delaybuf.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/delaybuf.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o @@ -15555,17 +15552,17 @@ /bin/ln -f .gene_info.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -15598,9 +15595,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/pack_string.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/serial/pack_string.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15625,9 +15621,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/pack_string.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/serial/pack_string.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15646,7 +15641,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objhook.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/serial/pack_string.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15672,7 +15668,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objhook.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/serial/pack_string.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15683,8 +15680,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasn.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/serial/objhook.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -15710,12 +15706,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasn.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/serial/objhook.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] ++-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/commentdiag.cpp -o commentdiag.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/indentstream.cpp -o indentstream.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/html_exception.cpp -o html_exception.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o +/bin/rm -f libxhtml.so .libxhtml.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxhtml.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxhtml.so +/bin/ln -f .xhtml.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xhtml.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -15755,25 +15761,46 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/commentdiag.cpp -o commentdiag.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/indentstream.cpp -o indentstream.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/html_exception.cpp -o html_exception.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o -/bin/rm -f libxhtml.so .libxhtml.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxhtml.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxhtml.so -/bin/ln -f .xhtml.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xhtml.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -e-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/exception.cpp -o exception.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objhook.cpp -o objhook.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objlist.cpp -o objlist.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objstack.cpp -o objstack.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objostrasn.cpp -o objostrasn.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasn.cpp -o objistrasn.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objostrasnb.cpp -o objostrasnb.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasnbIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasn.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasn.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/src/serial/objostrasnb.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -15802,7 +15829,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +e-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/exception.cpp -o exception.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objhook.cpp -o objhook.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objlist.cpp -o objlist.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objstack.cpp -o objstack.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objostrasn.cpp -o objostrasn.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasn.cpp -o objistrasn.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objostrasnb.cpp -o objostrasnb.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasnbIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/src/serial/objistrasnb.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -16067,17 +16101,17 @@ /bin/ln -f .xconnect.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -cd algo/blast/core/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/core/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core TMPL=blast -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core TMPL=blast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o @@ -16086,7 +16120,14 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o -/usr/bin/gcc -std=gnu11 -fgnu89/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/s/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ @@ -16100,23 +16141,18 @@ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ --inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/s/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c:1500:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; - ^ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c:1638:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - ((T_MB_IdxEndSearchIndication)( - ^ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c:1725:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - ((T_MB_IdxEndSearchIndication)( - ^ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c: In function 'BlastNaHashLookupTableNew': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c:2236:27: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic] + lookup->hash_callback = FNV_hash; + ^ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c:2296:49: warning: ISO C forbids passing argument 8 of 'BlastHashLookupIndexQueryExactMatches' between function pointer and 'void *' [-Wpedantic] + lookup->hash_callback, + ~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/core/blast_nalookup.h:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c:31: +/build/ncbi-blast+-2.8.1/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected 'TNaLookupHashFunction' {aka 'unsigned int (*)(unsigned char *, unsigned int)'} but argument is of type 'void *' + TNaLookupHashFunction hash_func, + ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_aascan.c: In function 'BlastChooseProteinScanSubject': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_aascan.c:567:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; @@ -16134,18 +16170,6 @@ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nascan.c:293:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c: In function 'BlastNaHashLookupTableNew': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c:2236:27: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic] - lookup->hash_callback = FNV_hash; - ^ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c:2296:49: warning: ISO C forbids passing argument 8 of 'BlastHashLookupIndexQueryExactMatches' between function pointer and 'void *' [-Wpedantic] - lookup->hash_callback, - ~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/core/blast_nalookup.h:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nalookup.c:31: -/build/ncbi-blast+-2.8.1/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected 'TNaLookupHashFunction' {aka 'unsigned int (*)(unsigned char *, unsigned int)'} but argument is of type 'void *' - TNaLookupHashFunction hash_func, - ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nascan.c: In function 's_SmallNaChooseScanSubject': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nascan.c:1320:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; @@ -16195,6 +16219,16 @@ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nascan.c:1372:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c:1500:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; + ^ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c:1638:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + ((T_MB_IdxEndSearchIndication)( + ^ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_engine.c:1725:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + ((T_MB_IdxEndSearchIndication)( + ^ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nascan.c: In function 's_MBChooseScanSubject': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nascan.c:2620:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; @@ -16265,6 +16299,7 @@ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/na_ungapped.c: In function 's_IsSeedMasked': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/na_ungapped.c:488:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) @@ -16365,7 +16400,21 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFIL/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILblast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_util.cpp -o cgi_util.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_session.cpp -o cgi_session.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/user_agent.cpp -o user_agent.o +/bin/rm -f libxcgi.so .libxcgi.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxcgi.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxcgi.so +/bin/ln -f .xcgi.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xcgi.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ @@ -16393,20 +16442,13 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/sblast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_util.cpp -o cgi_util.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_session.cpp -o cgi_session.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/cgi/user_agent.cpp -o user_agent.o -/bin/rm -f libxcgi.so .libxcgi.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxcgi.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxcgi.so -/bin/ln -f .xcgi.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xcgi.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/smake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f gene_info_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/gene_info_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' rc/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o @@ -16429,15 +16471,7 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/jumper.c -o jumper.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_Omake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f gene_info_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/gene_info_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -FFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib @@ -16453,17 +16487,17 @@ /bin/ln -f .xser.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -cd serial/datatool/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd serial/datatool/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/serial/datatool TMPL=datatool -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/serial/datatool TMPL=datatool -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/type.cpp -o type.o @@ -16472,15 +16506,7 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/unitype.cpp -o unitype.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/blocktype.cpp -o blocktype.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choicetype.cpp -o choicetype.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/typestr.cpp -o typestr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp -o stdstr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/classstr.cpp -o classstr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/enumstr.cpp -o enumstr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stlstr.cpp -o stlstr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-comIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, @@ -16518,13 +16544,8 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/unitype.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/type.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -16545,13 +16566,8 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/unitype.cpp:33: +In file included from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/type.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -16563,7 +16579,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/statictype.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -16590,7 +16606,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/statictype.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -16637,8 +16653,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/type.cpp:49: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/statictype.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -16659,8 +16680,13 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/type.cpp:49: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/statictype.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -16694,7 +16720,26 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp:34: +/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.hpp: In constructor 'ncbi::CBitStringTypeStrings::CBitStringTypeStrings(const string&, const ncbi::CComments&, ncbi::CTypeStrings*)': +/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.hpp:133:27: warning: 'ncbi::CBitStringTypeStrings::m_BitNames' will be initialized after [-Wreorder] + AutoPtr m_BitNames; + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp:201:56: warning: base 'ncbi::CStdTypeStrings' [-Wreorder] + : m_BitNames(bitNames), CParent(type,comments,false) + ^ +/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp:199:1: warning: when initialized here [-Wreorder] + CBitStringTypeStrings::CBitStringTypeStrings(const string& type, + ^~~~~~~~~~~~~~~~~~~~~ +_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/blocktype.cpp -o blocktype.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choicetype.cpp -o choicetype.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/typestr.cpp -o typestr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp -o stdstr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/classstr.cpp -o classstr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/enumstr.cpp -o enumstr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stlstr.cpp -o stlstr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-comIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.hpp:36, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choicestr.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -16723,17 +16768,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp:34: -/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.hpp: In constructor 'ncbi::CBitStringTypeStrings::CBitStringTypeStrings(const string&, const ncbi::CComments&, ncbi::CTypeStrings*)': -/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.hpp:133:27: warning: 'ncbi::CBitStringTypeStrings::m_BitNames' will be initialized after [-Wreorder] - AutoPtr m_BitNames; - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp:201:56: warning: base 'ncbi::CStdTypeStrings' [-Wreorder] - : m_BitNames(bitNames), CParent(type,comments,false) - ^ -/build/ncbi-blast+-2.8.1/c++/src/serial/datatool/stdstr.cpp:199:1: warning: when initialized here [-Wreorder] - CBitStringTypeStrings::CBitStringTypeStrings(const string& type, - ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.hpp:36, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choiceptrstr.cpp:36: @@ -16790,7 +16824,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +pile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choicestr.cpp -o choicestr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/value.cpp -o value.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/module.cpp -o module.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/moduleset.cpp -o moduleset.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/generate.cpp -o generate.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/filecode.cpp -o filecode.oIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/generate.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -16817,14 +16858,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -pile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choicestr.cpp -o choicestr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/value.cpp -o value.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/module.cpp -o module.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/moduleset.cpp -o moduleset.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/generate.cpp -o generate.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/filecode.cpp -o filecode.oIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/filecode.cpp:34: @@ -16894,19 +16928,7 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/parser.cpp -o parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/lexer.cpp -o lexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/exceptions.cpp -o exceptions.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8E_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp -o tar.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive.cpp -o archive.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp -o archive_.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o -/bin/rm -f libxcompress.so .libxcompress.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxcompress.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxcompress.so -/bin/ln -f .xcompress.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xcompress.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/dtdparser.cpp:50: @@ -17003,6 +17025,18 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +E_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/tar.cpp -o tar.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive.cpp -o archive.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_.cpp -o archive_.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o +/bin/rm -f libxcompress.so .libxcompress.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxcompress.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxcompress.so +/bin/ln -f .xcompress.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xcompress.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/datatool.hpp:36, from /build/ncbi-blast+-2.8.1/c++/src/serial/datatool/wsdlparser.cpp:39: @@ -17081,115 +17115,90 @@ /bin/ln -f datatool /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' -cd objects/general/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/biblio/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/medline/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/pub/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/seqcode/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/seq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/seqset/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd objects/general/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/scoremat/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/biblio/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/medline/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/pub/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/seqcode/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/seq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/seqset/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/scoremat/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/genomecoll/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/seqedit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/ncbi-blast+-2.8.1/c++/src/objects/general && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh general all +cd objects/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/genomecoll/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/seqsplit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/submit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/variation/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/ncbi-blast+-2.8.1/c++/src/objects/biblio && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh biblio all make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/seqedit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd /build/ncbi-blast+-2.8.1/c++/src/objects/medline && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh medline all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seqcode all make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/seqsplit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/submit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd /build/ncbi-blast+-2.8.1/c++/src/objects/seqset && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seqset all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh scoremat all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/pub && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh pub all make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/variation/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh blastdb all make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/ncbi-blast+-2.8.1/c++/src/objects/general && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh general all -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/ncbi-blast+-2.8.1/c++/src/objects/medline && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh medline all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/biblio && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh biblio all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh scoremat all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/seqset && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seqset all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh genome_collection all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seqedit all +make[4]: warning: -j15 forced in submake: resetting jobserver mode. cd /build/ncbi-blast+-2.8.1/c++/src/objects/blast && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh blast all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh blastdb all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seqcode all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/pub && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh pub all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/variation && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh variation all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/submit && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh submit all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/id1 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh id1 all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seqedit all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh genome_collection all cd /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seqsplit all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/submit && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh submit all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/variation && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh variation all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seq -w -j16 --jobserver-auth=9,10 all -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ - -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ - -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seq -w -j15 --jobserver-auth=9,10 all +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seqcode.asn -M "" -oA \ @@ -17198,71 +17207,57 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m general.asn -M "" -oA \ - -oc general -or objects/general -odi -od general.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ - -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ + -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ - -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ + -oc medline -or objects/medline -odi -od medline.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ - -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ + -oc pub -or objects/pub -odi -od pub.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/submit' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ @@ -17271,45 +17266,69 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/submit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ - -oc medline -or objects/medline -odi -od medline.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ + -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ - -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ + -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/submit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ + -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' +/usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ @@ -17318,54 +17337,66 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +/usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ - -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ + -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' +/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' +/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ - -oc pub -or objects/pub -odi -od pub.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m general.asn -M "" -oA \ + -oc general -or objects/general -odi -od general.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/submit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' -cd /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh gencoll_client all -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ @@ -17374,21 +17405,19 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ @@ -17397,76 +17426,50 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' -/usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +/usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -Waiting for /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/make_asn.lockmake[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -/usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -/usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -/usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -/usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ + -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +cd /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh gencoll_client all +Waiting for /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/make_asn.lockmake[7]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' status=0 ; \ -MAKE="/usr/bin/make -w -j16 --jobserver-auth=12,14"; \ +MAKE="/usr/bin/make -w -j15 --jobserver-auth=12,14"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../$x ; \ @@ -17477,7 +17480,7 @@ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqalign' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -17486,7 +17489,7 @@ datatool: 2.19.1 make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqalign' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqblock' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -17495,9 +17498,9 @@ datatool: 2.19.1 make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqblock' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c+make[7]: warning: -j16 forced in submake: resetting jobserver mode. -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c+make[7]: warning: -j15 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ @@ -17507,7 +17510,7 @@ datatool: 2.19.1 make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ @@ -17516,7 +17519,7 @@ datatool: 2.19.1 make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqres' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -17525,41 +17528,17 @@ datatool: 2.19.1 make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqres' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ - -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -cd objects/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ - -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -cd objects/taxon1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m general.asn -M "" -oA \ - -oc general -or objects/general -odi -od general.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ + -oc blast -or objects/blast -odi -od blast.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ @@ -17568,65 +17547,57 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medline' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ + -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m seqcode.asn -M "" -oA \ - -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ + -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' -cd objects/blastxml/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -cd objects/blastxml2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ - -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ + -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -cd objects/entrez2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/gbseq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/biblio' +cd objects/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ - -oc blast -or objects/blast -odi -od blast.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m seqcode.asn -M "" -oA \ + -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ - -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m general.asn -M "" -oA \ + -oc general -or objects/general -odi -od general.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb' -cd objects/medlars/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/pubmed/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/general' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ @@ -17635,54 +17606,42 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pub' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ - -oc variation -or objects/variation -odi -od variation.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ + -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ - -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' +cd objects/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ - -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ + -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -cd objects/mla/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqset' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ - -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ + -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -cd objects/taxon3/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +cd objects/taxon1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/submit' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ @@ -17691,69 +17650,92 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/submit' +cd objects/blastxml/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/blastxml2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -cd /build/ncbi-blast+-2.8.1/c++/src/objects/id2 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh id2 all -cd objects/valid/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/entrez2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/gbseq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd objects/medlars/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/pubmed/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ - -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ + -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/mla/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' +cd objects/taxon3/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/general/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/valid/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ + -oc variation -or objects/variation -odi -od variation.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/variation' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/seqcode/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/general/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh blastxml all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/id1 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh id1 all make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. cd /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh taxon1 all -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. cd /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh blastxml2 all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/id2 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh id2 all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/mla && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh mla all cd /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh entrez2 all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh taxon3 all cd /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh gbseq all +cd /build/ncbi-blast+-2.8.1/c++/src/objects/valid && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh valid all cd /build/ncbi-blast+-2.8.1/c++/src/objects/medlars && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh medlars all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh blastxml all cd /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh pubmed all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/valid && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh valid all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3 && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh taxon3 all -cd /build/ncbi-blast+-2.8.1/c++/src/objects/mla && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh mla all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/general TMPL=general -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode TMPL=seqcode -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -.make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/general TMPL=general -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +.make[5]: warning: -j15 forced in submake: resetting jobserver mode. File blastxml.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m blastxml.asn -M "" -oA \ @@ -17762,10 +17744,85 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ + -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. + +Acquired /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/make_asn.lock for PID 14125 (make_asn) +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Date_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general___.cpp:2: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Date_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general___.cpp:2: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' File blastxml2.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m blastxml2.asn -M "" -oA \ @@ -17774,48 +17831,22 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m valid.asn -M "" -oA \ - -oc valid -or objects/valid -odi -od valid.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' - -Acquired /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/make_asn.lock for PID 38069 (make_asn) make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ - -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ - -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ + -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ @@ -17824,30 +17855,39 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m entrez2.asn -M "" -oA \ - -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ + -oc mla -or objects/mla -odi -od mla.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ - -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ + -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -17856,82 +17896,39 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ + -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ + +datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ - -oc mla -or objects/mla -odi -od mla.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m gbseq.asn -M "" -oA \ @@ -17940,62 +17937,19 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -/usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: *** No rule to make target '/build/ncbi-blast+-2.8.1/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -NOTE: skipping project "local_taxon" due to unmet requirements -/usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Date_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Dbtag.cpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general__.cpp:4: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18017,74 +17971,125 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Date_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Dbtag.cpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general__.cpp:4: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m entrez2.asn -M "" -oA \ + -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' +/usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/Seq_code_set_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/seqcode___.cpp:2: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/Seq_code_set_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/seqcode___.cpp:2: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: *** No rule to make target '/build/ncbi-blast+-2.8.1/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. +NOTE: skipping project "local_taxon" due to unmet requirements +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +/usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +/usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +/usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m valid.asn -M "" -oA \ + -oc valid -or objects/valid -odi -od valid.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' +/usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ @@ -18094,55 +18099,20 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Dbtag.cpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general__.cpp:4: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/Dbtag.cpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/general/general__.cpp:4: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src @@ -18157,8 +18127,8 @@ make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' cd /build/ncbi-blast+-2.8.1/c++/src/objects/seq && /build/ncbi-blast+-2.8.1/c++/BUILD/build/new_module.sh seq all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seq' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ @@ -18168,17 +18138,62 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ + -oc mla -or objects/mla -odi -od mla.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +File blastxml.module not found. Using defaults... +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m blastxml.asn -M "" -oA \ + -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +cd objects/seqcode/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/blastxml/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ + -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ + -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id1' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' File blastxml2.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m blastxml2.asn -M "" -oA \ @@ -18187,7 +18202,13 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/blastxml2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ @@ -18196,29 +18217,18 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/id2' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -cd objects/blastxml2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m gbseq.asn -M "" -oA \ - -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ - -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ + -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m valid.asn -M "" -oA \ @@ -18227,22 +18237,8 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/valid' -File blastxml.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m blastxml.asn -M "" -oA \ - -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -cd objects/gbseq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ @@ -18252,8 +18248,7 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -18262,7 +18257,12 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m entrez2.asn -M "" -oA \ @@ -18272,77 +18272,57 @@ datatool: 2.19.1 make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ - -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/medlars' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -cd objects/blastxml/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ - -oc mla -or objects/mla -odi -od mla.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/mla' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/entrez2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +cd objects/entrez2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqcode TMPL=seqcode -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m gbseq.asn -M "" -oA \ + -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +cd objects/gbseq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml TMPL=blastxml -w -j15 --jobserver-auth=7,8 all +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' -/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ - -opm /build/ncbi-blast+-2.8.1/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ - -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ - -datatool: 2.19.1 -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2 TMPL=entrez2 -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2 TMPL=entrez2 -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq TMPL=gbseq -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blastxml TMPL=blastxml -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/gbseq TMPL=gbseq -w -j15 --jobserver-auth=7,8 all In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -18351,10 +18331,43 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/E2Reply_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/Seq_code_set_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuiIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/Seq_code_set_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqcode/seqcode___.cpp:2: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, @@ -18384,17 +18397,20 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included froldInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml/BlastOutput_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml/blastxml___.cpp:2: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, @@ -18402,19 +18418,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuil-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /buildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -18433,18 +18440,31 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /buildm /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml/BlastOutput_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml/blastxml___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - d/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ + -opm /build/ncbi-blast+-2.8.1/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ + -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ + +datatool: 2.19.1 +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, @@ -18453,21 +18473,35 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2___.cpp:2: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/E2Reply_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18480,8 +18514,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/blastxml2___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18509,13 +18543,13 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastxml2/blastxml2___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/ncbi-blast+-2.8.1/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-2.8.1/c++/src/objects/general/general.asn /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub.asn /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-2.8.1/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-2.8.1/c++ builddir=/build/ncbi-blast+-2.8.1/c++/BUILD/build DATATOOL=/build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/ncbi-blast+-2.8.1/c++/src all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/src/objects/seq' /build/ncbi-blast+-2.8.1/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-2.8.1/c++ \ -opm /build/ncbi-blast+-2.8.1/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ @@ -18555,27 +18589,39 @@ /bin/ln -f .blastxml2.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o -/bin/rm -f libentrez2.so .libentrez2.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libentrez2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libentrez2.so -/bin/ln -f .entrez2.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.entrez2.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -cd objects/entrez2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2 TMPL=entrez2cli -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/general/general__.cpp -o general__.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/general/general___.cpp -o general___.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/general/uoconv.cpp -o uoconv.o +/bin/rm -f libgeneral.so .libgeneral.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxser -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libgeneral.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libgeneral.so +/bin/ln -f .general.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.general.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' +cd objects/biblio/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null +cd objects/valid/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/biblio TMPL=biblio -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/valid TMPL=valid -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -18584,7 +18630,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client_.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Affil_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18612,21 +18659,17 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client_.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Affil_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/rpcbase.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client_.hpp:50, - from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/Comment_rule.cpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18648,66 +18691,19 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/rpcbase.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client_.hpp:50, - from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/Comment_rule.cpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/general/general__.cpp -o general__.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/general/general___.cpp -o general___.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/general/uoconv.cpp -o uoconv.o -/bin/rm -f libgeneral.so .libgeneral.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxser -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libgeneral.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libgeneral.so -/bin/ln -f .general.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.general.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -cd objects/biblio/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null -cd objects/valid/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/biblio TMPL=biblio -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/valid TMPL=valid -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o -/bin/rm -f libgbseq.so .libgbseq.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libgbseq.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libgbseq.so -/bin/ln -f .gbseq.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.gbseq.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/Comment_rule.cpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/valid__.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Auth_list.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio__.cpp:5: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18730,8 +18726,9 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/Comment_rule.cpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/valid__.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Auth_list.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio__.cpp:5: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18779,12 +18776,36 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o +/bin/rm -f libentrez2.so .libentrez2.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libentrez2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libentrez2.so +/bin/ln -f .entrez2.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.entrez2.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +cd objects/entrez2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/entrez2 TMPL=entrez2cli -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Auth_list.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio__.cpp:5: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18806,24 +18827,36 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Auth_list.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio__.cpp:5: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o +/bin/rm -f libgbseq.so .libgbseq.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libgbseq.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libgbseq.so +/bin/ln -f .gbseq.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.gbseq.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Affil_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/serial/rpcbase.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client_.hpp:50, + from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18849,14 +18882,15 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/Affil_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/biblio/biblio___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/serial/rpcbase.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client_.hpp:50, + from /build/ncbi-blast+-2.8.1/c++/include/objects/entrez2/entrez2_client.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/valid/valid__.cpp:3: /build/ncbi-blast+-2.8.1/c++/src/objects/valid/Comment_set.cpp: In static member function 'static std::vector > ncbi::objects::CComment_set::GetFieldNames(const string&)': /build/ncbi-blast+-2.8.1/c++/src/objects/valid/Comment_set.cpp:162:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] @@ -18893,28 +18927,28 @@ /bin/ln -f .biblio.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -cd objects/medline/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null -cd objects/medlars/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medline/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medlars/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/medline TMPL=medline -w -j16 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/medlars TMPL=medlars -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/medlars TMPL=medlars -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/medline TMPL=medline -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -18923,8 +18957,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/Medlars_entry_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/DocRef_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18952,8 +18986,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/Medlars_entry_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/DocRef_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18966,8 +19000,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/DocRef_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/Medlars_entry_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -18995,8 +19029,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/DocRef_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/medline/medline___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/Medlars_entry_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19021,28 +19055,28 @@ /bin/ln -f .medline.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -cd objects/pub/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null -cd objects/pubmed/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pub/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pubmed/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed TMPL=pubmed -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/pub TMPL=pub -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/pub TMPL=pub -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/pubmed TMPL=pubmed -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -19051,8 +19085,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/Pub_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19080,8 +19114,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/Pub_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19094,8 +19128,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/Pub_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19123,8 +19157,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/pubmed/pubmed___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/Pub_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19184,28 +19218,28 @@ /bin/ln -f .pub.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -cd objects/seq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null +cd objects/mla/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/mla/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/mla TMPL=mla -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seq TMPL=seq -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seq TMPL=seq -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/mla TMPL=mla -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include seqalign__.cpp -o seqalign__.o @@ -19222,14 +19256,12 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/Error_val_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Bioseq.cpp:65, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq__.cpp:6: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19251,14 +19283,12 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/Error_val_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Bioseq.cpp:65, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq__.cpp:6: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19269,11 +19299,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, - from seqfeat___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_seg.cpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, + from seqalign__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19299,26 +19327,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, - from seqfeat___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_seg.cpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, + from seqalign__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, - from seqblock___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BioSource.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3, + from seqfeat__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19340,15 +19364,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, - from seqblock___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BioSource.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3, + from seqfeat__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19361,9 +19383,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, - from seqloc___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/Error_val_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19391,22 +19412,23 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, - from seqloc___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/Error_val_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BioSource.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3, - from seqfeat__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, + from seqloc___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19427,14 +19449,31 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, + from seqloc___.cpp:1: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Bioseq.cpp:65, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq__.cpp:6: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, + from seqblock___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19451,29 +19490,20 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BioSource.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3, - from seqfeat__.cpp:1: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Bioseq.cpp:65, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq__.cpp:6: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, + from seqblock___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19486,9 +19516,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres___.cpp:2, - from seqres___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, + from seqalign___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19516,16 +19546,24 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres___.cpp:2, - from seqres___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, + from seqalign___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, + from seqfeat___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19546,19 +19584,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/SeqTable_column_info.cpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable__.cpp:8, - from seqtable__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Align_def_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19566,6 +19601,20 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, + from seqfeat___.cpp:1: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -19580,11 +19629,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/SeqTable_column_info.cpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable__.cpp:8, - from seqtable__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Align_def_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19597,9 +19649,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, - from seqalign___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres___.cpp:2, + from seqres___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19627,24 +19679,18 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, - from seqalign___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres___.cpp:2, + from seqres___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, - from seqtable___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Seq_graph.cpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres__.cpp:5, + from seqres__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19666,29 +19712,17 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, - from seqtable___.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Seq_graph.cpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres__.cpp:5, + from seqres__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Align_def_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, + from seqloc__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19709,24 +19743,24 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/Align_def_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq___.cpp:2: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, + from seqloc__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Seq_graph.cpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres__.cpp:5, - from seqres__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, + from seqtable___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19748,22 +19782,26 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/Seq_graph.cpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqres/seqres__.cpp:5, - from seqres__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, + from seqtable___.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_seg.cpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, - from seqalign__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/SeqTable_column_info.cpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable__.cpp:8, + from seqtable__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19785,13 +19823,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Dense_seg.cpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, - from seqalign__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/SeqTable_column_info.cpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqtable/seqtable__.cpp:8, + from seqtable__.cpp:1: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19834,9 +19870,8 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, - from seqloc__.cpp:1: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -19857,17 +19892,12 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, - from seqloc__.cpp:1: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp:2864:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - catch (CStringException) { - ^~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30, from seqfeat__.cpp:1: /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)': @@ -19905,48 +19935,15 @@ /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, - from seqfeat__.cpp:1: -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)': -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp:435:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException ) { - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)': -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException) { - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp:487:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException) { - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, - from seqloc__.cpp:1: -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp: In member function 'void ncbi::objects::CSeq_id::GetLabel(std::__cxx11::string*, int*, ncbi::objects::CSeq_id::ELabelType) const': -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp:1676:12: warning: enumeration value 'eFastaContent' not handled in switch [-Wswitch] - switch (type) { - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla__.cpp -o mla__.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla___.cpp -o mla___.o +/bin/rm -f libmla.so .libmla.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libmla.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libmla.so +/bin/ln -f .mla.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.mla.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': @@ -19977,60 +19974,18 @@ /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_loc_mapper_base.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla__.cpp -o mla__.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/mla/mla___.cpp -o mla___.o -/bin/rm -f libmla.so .libmla.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libmla.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libmla.so -/bin/ln -f .mla.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.mla.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -cd objects/mla/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null +cd objects/mla/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/mla TMPL=mlacli -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/mla TMPL=mlacli -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -20115,6 +20070,85 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, + from seqloc__.cpp:1: +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp: In member function 'void ncbi::objects::CSeq_id::GetLabel(std::__cxx11::string*, int*, ncbi::objects::CSeq_id::ELabelType) const': +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqloc/Seq_id.cpp:1676:12: warning: enumeration value 'eFastaContent' not handled in switch [-Wswitch] + switch (type) { + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, + from seqfeat__.cpp:1: +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)': +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp:435:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException ) { + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)': +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException) { + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/../seqfeat/SubSource.cpp:487:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException) { + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp:2864:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + catch (CStringException) { + ^~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_loc_mapper_base.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o @@ -20194,14 +20228,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - if ( row_n == p_row ) { - ~~~~~~^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': -/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] - catch (CAnnotMapperException) { - ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -20249,6 +20275,14 @@ /bin/ln -f .mlacli.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + if ( row_n == p_row ) { + ~~~~~~^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': +/build/ncbi-blast+-2.8.1/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] + catch (CAnnotMapperException) { + ^~~~~~~~~~~~~~~~~~~~~ Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -I/build/ncbi-blast+-2.8.1/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seq/so_map.cpp -o so_map.o @@ -20261,82 +20295,80 @@ /bin/ln -f .seq.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -cd objects/seqset/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null -cd objects/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqset/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/genomecoll/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null -cd objects/variation/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null -cd objects/taxon1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null -cd objects/taxon3/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/genomecoll/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null +cd objects/variation/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/taxon1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/taxon3/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb TMPL=blastdb -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqset TMPL=seqset -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1 TMPL=taxon1 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll TMPL=genome_collection -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/variation TMPL=variation -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3 TMPL=taxon3 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blastdb TMPL=blastdb -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqset TMPL=seqset -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll TMPL=genome_collection -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/variation TMPL=variation -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/taxon3 TMPL=taxon3 -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/taxon1 TMPL=taxon1 -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon1_data_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assembly.cpp:53, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection__.cpp:3: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20358,14 +20390,12 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon1_data_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assembly.cpp:53, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection__.cpp:3: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20376,8 +20406,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/cache.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20403,22 +20435,23 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/cache.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20440,26 +20473,27 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon2_data.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1__.cpp:8: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/Bioseq_set_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20481,12 +20515,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon2_data.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1__.cpp:8: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/Bioseq_set_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20536,13 +20572,14 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20563,29 +20600,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/T3Data.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/T3Data.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3__.cpp:3: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20607,28 +20631,38 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/T3Data.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/T3Data.cpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3__.cpp:3: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3___.cpp:2: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/utils.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/gb_release_file.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20650,27 +20684,25 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/utils.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/gb_release_file.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon1_data_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20692,14 +20724,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon1_data_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20749,11 +20781,14 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/gb_release_file.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20774,16 +20809,27 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/ctreecont.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/Bioseq_set_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20791,17 +20837,7 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/gb_release_file.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20819,24 +20855,23 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/Bioseq_set_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqset/seqset___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistrasn.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/blastdb___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/T3Data.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/T3Data.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3__.cpp:3: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20858,28 +20893,27 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/blastdb/blastdb___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/T3Data.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/T3Data.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon3/taxon3__.cpp:3: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon2_data.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1__.cpp:8: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20901,14 +20935,12 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/Taxon2_data.cpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/taxon1__.cpp:8: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20916,11 +20948,12 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assembly.cpp:53, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection__.cpp:3: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20943,11 +20976,12 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/GC_Assembly.cpp:53, - from /build/ncbi-blast+-2.8.1/c++/src/objects/genomecoll/genome_collection__.cpp:3: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -20988,61 +21022,61 @@ /bin/ln -f .seqset.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -cd objects/scoremat/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null -cd objects/seqedit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/seqsplit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/submit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null +cd objects/scoremat/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqedit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/seqsplit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/submit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat TMPL=scoremat -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit TMPL=seqedit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/submit TMPL=submit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/scoremat TMPL=scoremat -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit TMPL=seqsplit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/id1 TMPL=id1 -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit TMPL=seqsplit -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/submit TMPL=submit -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/seqedit TMPL=seqedit -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/id1 TMPL=id1 -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -21051,8 +21085,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/seqedit___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/BlockProperty_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21080,8 +21114,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/seqedit___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/BlockProperty_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21094,8 +21128,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/BlockProperty_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21123,8 +21157,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/BlockProperty_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/scoremat/scoremat___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21137,8 +21171,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/Entry_complexities_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/id1___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21166,8 +21200,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/Entry_complexities_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/id1___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21180,8 +21214,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/Contact_info_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/submit___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/Entry_complexities_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21209,8 +21243,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/Contact_info_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/submit___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/Entry_complexities_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21223,8 +21257,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/Contact_info_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21252,8 +21286,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/seqsplit/seqsplit___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/Contact_info_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21312,17 +21346,17 @@ /bin/ln -f .submit.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -cd objtools/readers/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/readers/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/readers TMPL=xobjread -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/readers TMPL=xobjread -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o @@ -21339,7 +21373,7 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.oIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/format_guess_ex.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21360,13 +21394,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/format_guess_ex.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/format_guess_ex.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/read_util.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21387,19 +21425,19 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/format_guess_ex.cpp:36: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/read_util.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta_reader_utils.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/aln_reader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21421,38 +21459,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta_reader_utils.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/aln_reader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/agp_seq_entry.cpp:51: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/read_util.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21473,28 +21487,7 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/read_util.cpp:40: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/agp_seq_entry.cpp:51: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21502,7 +21495,7 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta_reader_utils.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21523,8 +21516,18 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta_reader_utils.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/track_data.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/agp_seq_entry.cpp:51: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21532,14 +21535,7 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21552,7 +21548,10 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/track_data.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/agp_seq_entry.cpp:51: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21598,8 +21597,12 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta_reader_utils.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta_reader_utils.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/aln_reader.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21621,8 +21624,12 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta_reader_utils.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/reader_base.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta_reader_utils.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/aln_reader.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21676,17 +21683,17 @@ /bin/ln -f .scoremat.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -cd objects/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blast TMPL=blast -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/blast TMPL=blast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -21764,112 +21771,6 @@ /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:472:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - if (blockSizes.size() != blockCount) { - ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:493:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - if (blockStarts.size() != blockCount) { - ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp: In member function 'bool ncbi::objects::CBedReader::xParseFeature(const string&, ncbi::CRef&, ncbi::objects::ILineErrorListener*)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:598:14: warning: variable 'record_copy' set but not used [-Wunused-but-set-variable] - CTempString record_copy = NStr::TruncateSpaces_Unsafe(line); - ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_data.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_data.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/microarray_reader.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/microarray_reader.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp:409:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - if (row > m_MiddleSections.size()) { - ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/phrap.cpp:57: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/phrap.cpp:57: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o @@ -21881,7 +21782,7 @@ make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_base.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/track_data.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21902,16 +21803,13 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_base.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/track_data.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_data.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21932,19 +21830,13 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:37: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_data.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/microarray_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -21965,27 +21857,18 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/microarray_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/track_data.cpp -o track_data.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_data.cpp -o reader_data.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/phrap.cpp -o phrap.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_base.cpp -o reader_base.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp -o readfeat.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/wiggle_reader.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/phrap.cpp:57: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22007,9 +21890,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/wiggle_reader.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/phrap.cpp:57: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22115,12 +22000,68 @@ /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp: In member function 'virtual void ncbi::objects::CFastaReader::ParseDefLine(const TStr&, ncbi::objects::ILineErrorListener*)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] + m_ExpectedEnd = data.range_end - data.range_start; + ^~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here + NCBI_DEPRECATED TSeqPos m_ExpectedEnd; + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] + m_ExpectedEnd = data.range_end - data.range_start; + ^~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here + NCBI_DEPRECATED TSeqPos m_ExpectedEnd; + ^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:472:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + if (blockSizes.size() != blockCount) { + ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:493:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + if (blockStarts.size() != blockCount) { + ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp: In member function 'bool ncbi::objects::CBedReader::xParseFeature(const string&, ncbi::CRef&, ncbi::objects::ILineErrorListener*)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/bed_reader.cpp:598:14: warning: variable 'record_copy' set but not used [-Wunused-but-set-variable] + CTempString record_copy = NStr::TruncateSpaces_Unsafe(line); + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/aln_reader.cpp:409:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + if (row > m_MiddleSections.size()) { + ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_base.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_base.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/gff3_sofa.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_sofa.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22144,29 +22085,16 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/gff3_sofa.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_sofa.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp: In member function 'virtual void ncbi::objects::CFastaReader::ParseDefLine(const TStr&, ncbi::objects::ILineErrorListener*)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] - m_ExpectedEnd = data.range_end - data.range_start; - ^~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here - NCBI_DEPRECATED TSeqPos m_ExpectedEnd; - ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] - m_ExpectedEnd = data.range_end - data.range_start; - ^~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/fasta.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here - NCBI_DEPRECATED TSeqPos m_ExpectedEnd; - ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22187,13 +22115,27 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp:35: + +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/track_data.cpp -o track_data.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_data.cpp -o reader_data.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/phrap.cpp -o phrap.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/reader_base.cpp -o reader_base.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp -o readfeat.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/wiggle_reader.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22214,7 +22156,10 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/line_reader.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/wiggle_reader.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22229,54 +22174,25 @@ /bin/ln -f .seqsplit.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -cd objmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null -cd objects/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null +cd objmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/id2 TMPL=id2 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objmgr TMPL=objmgr -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/table_field.cpp -o table_field.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_selector.cpp -o annot_selector.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/feat_ci.cpp -o feat_ci.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/graph_ci.cpp -o graph_ci.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object.cpp -o annot_object.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_ci.cpp -o annot_ci.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/gff3_sofa.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22293,31 +22209,44 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2___.cpp:2: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/gff3_sofa.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objects/id2 TMPL=id2 -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objmgr TMPL=objmgr -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/table_field.cpp -o table_field.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_annot_info.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_annot_info.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/snp_annot_info.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22344,7 +22273,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_annot_info.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_annot_info.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/snp_annot_info.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22354,10 +22283,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_map_switch.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_map_switch.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22382,22 +22310,23 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_map_switch.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_map_switch.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/table_field.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22419,12 +22348,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/table_field.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22434,16 +22365,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_selector.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objects/id2/id2processor_interface.hpp:32, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2_Request_Packet.cpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2__.cpp:26: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_map_switch.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22464,14 +22389,26 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_map_switch.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_map_switch.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/so_map.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_data.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_info.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22496,13 +22433,18 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/so_map.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_data.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_info.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -22520,24 +22462,7 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_selector.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objects/id2/id2processor_interface.hpp:32, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2_Request_Packet.cpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2__.cpp:26: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22547,10 +22472,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_descr_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/graph_ci.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22575,10 +22502,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_descr_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/graph_ci.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22588,9 +22517,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_annot_info.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/snp_annot_info.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22615,9 +22544,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_annot_info.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/snp_annot_info.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22662,9 +22591,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_info.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/feat_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22689,9 +22621,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_table_info.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/feat_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22701,39 +22636,17 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_types_ci.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_loc_cvt.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_loc_cvt.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/table_field.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22741,11 +22654,7 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22754,11 +22663,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_types_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/table_field.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22800,11 +22707,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/edit_saver.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/tse_info.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/data_source.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/tse_info.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/so_map.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_data.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22829,10 +22739,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_align_mapper.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_loc_cvt.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/so_map.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_data.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22846,8 +22755,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_ci.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22876,23 +22784,78 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_ci.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_types_ci.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objects/id2/id2processor_interface.hpp:32, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2_Request_Packet.cpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2__.cpp:26: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objects/id2/id2processor_interface.hpp:32, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/ID2_Request_Packet.cpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objects/id2/id2__.cpp:26: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_loc_cvt.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_loc_cvt.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/graph_ci.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/graph_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_annot_info.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22917,24 +22880,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_type_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/graph_ci.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/graph_ci.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/edit_saver.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/tse_info.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/data_source.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/tse_info.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_annot_info.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22944,9 +22892,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object_index.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22971,9 +22920,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object_index.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object_index.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -22987,8 +22937,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/feat_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/feat_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_ci.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23017,14 +22967,26 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_types_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/feat_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/feat_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/annot_ci.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_ci.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/seq_align_mapper.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_loc_cvt.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23045,17 +23007,13 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp:551:44: warning: enum constant in boolean context [-Wint-in-bool-context] - if (fRemoveRedundancy && m_Library && - ^~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gvf_reader.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23076,13 +23034,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gvf_reader.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/rm_reader.cpp:551:44: warning: enum constant in boolean context [-Wint-in-bool-context] + if (fRemoveRedundancy && m_Library && + ^~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/vcf_reader.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gvf_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23103,34 +23065,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/vcf_reader.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gvf_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:1268:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - } catch( CStringException ) { - ^~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp: In member function 'void ncbi::objects::CFeatureTableReader_Imp::x_InitId(const string&, ncbi::objects::CFeatureTableReader_Imp::TFlags)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:3382:46: warning: enum constant in boolean context [-Wint-in-bool-context] - (flags && CFeature_table_reader::fAllIdsAsLocal) ? CSeq_id::fParse_AnyLocal:CSeq_id::fParse_Default); - ^~~~~~~~~~~~~~ -TIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blasIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/best_feat_finder.cpp:37: +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotGeneric(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::ILineErrorListener*)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp:599:10: warning: unused variable 'st' [-Wunused-variable] + auto st = pFeature->GetData().GetSubtype(); + ^~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/vcf_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23151,32 +23096,28 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/best_feat_finder.cpp:37: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/vcf_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotGeneric(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::ILineErrorListener*)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp:599:10: warning: unused variable 'st' [-Wunused-variable] - auto st = pFeature->GetData().GetSubtype(); - ^~ /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp: In member function 'virtual bool ncbi::objects::CGtfReader::x_UpdateAnnotCds(const ncbi::objects::CGff2Record&, ncbi::CRef)': /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp:269:10: warning: unused variable 'needXref' [-Wunused-variable] bool needXref = false; ^~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/source_mod_parser.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/source_mod_parser.cpp:38: +SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_selector.cpp -o annot_selector.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/feat_ci.cpp -o feat_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/graph_ci.cpp -o graph_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object.cpp -o annot_object.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/annot_ci.cpp -o annot_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/edit_saver.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/tse_info.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/data_source.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23198,12 +23139,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/source_mod_parser.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/source_mod_parser.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/edit_saver.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/tse_info.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/data_source.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23243,18 +23185,10 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:1261:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] - for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:1348:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - for (auto i=0; i)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:1435:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] - for (auto i=0; i, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:1268:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + } catch( CStringException ) { + ^~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/edit_saver.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/tse_info.hpp:41, @@ -23290,6 +23224,10 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp: In member function 'void ncbi::objects::CFeatureTableReader_Imp::x_InitId(const string&, ncbi::objects::CFeatureTableReader_Imp::TFlags)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/readfeat.cpp:3382:46: warning: enum constant in boolean context [-Wint-in-bool-context] + (flags && CFeature_table_reader::fAllIdsAsLocal) ? CSeq_id::fParse_AnyLocal:CSeq_id::fParse_Default); + ^~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -23329,10 +23267,21 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/edit_saver.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/tse_info.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/bioseq_set_info.cpp:36: +TIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blasIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -23354,20 +23303,31 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/edit_saver.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/tse_info.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/bioseq_set_info.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/readers/agp_converter.cpp:35: +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:1261:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] + for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:1348:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + for (auto i=0; i)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/gff2_reader.cpp:1435:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] + for (auto i=0; i, std::__cxx11::basic_string > >&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] - for (int i=0; i&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - for (auto i=0; i, std::__cxx11::basic_string > >&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] + for (int i=0; i&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + for (auto i=0; i >&, std::vector >&, std::vector&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] - int found_short(-1); - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)': -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/weight.cpp:362:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] - } catch (CObjmgrUtilException) { - ^~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException) { - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*, ncbi::CSeqDBLockHold&) const': -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2690:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] - TIndx map_end = 0; - ^~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:51: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28117,9 +27888,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:51: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28129,11 +27899,18 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/split/id_range.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/split/blob_splitter_parser.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28155,34 +27932,15 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/split/blob_splitter_parser.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:1808:81: required from here -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:1736:57: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { - ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef.cpp: In member function 'ncbi::objects::CAutoDefModifierCombo* ncbi::objects::CAutoDef::FindBestModifierCombo()': -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef.cpp:201:28: warning: unused variable 'best' [-Wunused-variable] - CAutoDefModifierCombo *best = NULL; - ^~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -28201,8 +27959,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/impl/annot_object.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/split/id_range.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28211,10 +27972,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_available_modifier.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28238,24 +28001,39 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_available_modifier.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] + int found_short(-1); + ^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In member function 'char* ncbi::CSeqDBAtlas::Alloc(size_t, ncbi::CSeqDBLockHold&, bool)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:346:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] + catch(std::bad_alloc) { + ^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:160:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const string&)' defined but not used [-Wunused-function] + static void s_SeqDB_FileNotFound(const string & fname) + ^~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:1808:81: required from here +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:1736:57: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { + ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_mod_combo.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/impl/seqdbcol.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28277,18 +28055,38 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_mod_combo.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/impl/seqdbcol.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException) { + ^~~~~~~~~~ +ate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp -o objutil.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef.cpp -o autodef.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/nc/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*, ncbi::CSeqDBLockHold&) const': +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2690:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] + TIndx map_end = 0; + ^~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/weight.cpp:362:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] + } catch (CObjmgrUtilException) { + ^~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef.cpp: In member function 'ncbi::objects::CAutoDefModifierCombo* ncbi::objects::CAutoDef::FindBestModifierCombo()': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef.cpp:201:28: warning: unused variable 'best' [-Wunused-variable] + CAutoDefModifierCombo *best = NULL; + ^~~~ /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp: In function 'bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)': /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp:1407:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); @@ -28310,6 +28108,9 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:1098:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] + static bool s_IsValidAccession(const string& acc) + ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp: In function 'std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)': /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp:2022:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); @@ -28335,6 +28136,45 @@ /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp:2089:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef_source_desc.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_source_desc.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef_source_desc.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_source_desc.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp:2293:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { @@ -28384,6 +28224,49 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)': /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp:3129:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); @@ -28409,17 +28292,7 @@ /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/create_defline.cpp:3556:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/objutil.cpp:1098:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] - static bool s_IsValidAccession(const string& acc) - ^~~~~~~~~~~~~~~~~~ -ix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protecto/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CBioseqIndex::x_InitFeats()': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CBioseqIndex::x_InitFeats()': /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/indexer.cpp:1883:20: warning: variable 'sgx' set but not used [-Wunused-but-set-variable] CGapIndex* sgx = NULL; ^~~ @@ -28444,9 +28317,108 @@ ~~^~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:703:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] + } catch (CObjmgrUtilException) { + ^~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:746:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] + } catch (CObjmgrUtilException) { + ^~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:751:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] + } catch (CObjmgrUtilException) { + ^~~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_available_modifier.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_available_modifier.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/dustmask/symdust.cpp -o symdust.o +/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxalgodustmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgodustmask.so +/bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgodustmask.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28469,12 +28441,15 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp: In member function 'ncbi::CRef ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const': +/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:4597:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] + } catch (CObjmgrUtilException) { + ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -28514,30 +28489,98 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)': -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:703:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] - } catch (CObjmgrUtilException) { - ^~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)': -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:746:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] - } catch (CObjmgrUtilException) { - ^~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:751:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] - } catch (CObjmgrUtilException) { - ^~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/dustmask/symdust.cpp -o symdust.o -/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxalgodustmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgodustmask.so -/bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgodustmask.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp: In member function 'ncbi::CRef ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const': -/build/ncbi-blast+-2.8.1/c++/src/objmgr/util/sequence.cpp:4597:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] - } catch (CObjmgrUtilException) { - ^~~~~~~~~~~~~~~~~~~~ +ix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protectomake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/segmask/segmask.cpp -o segmask.o +/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxalgosegmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgosegmask.so +/bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgosegmask.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_mod_combo.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_mod_combo.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -28581,14 +28624,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/segmask/segmask.cpp -o segmask.o -/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxalgosegmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgosegmask.so -/bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgosegmask.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -28628,7 +28663,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -28680,39 +28714,39 @@ /bin/ln -f .seqdb.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o @@ -28732,7 +28766,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28760,16 +28795,17 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28792,41 +28828,28 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible buildIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent rs [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-timeproducible builds [-Wdate-time] + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -28836,15 +28859,7 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - e] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - ^ + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -28860,36 +28875,19 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28911,14 +28909,9 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28929,10 +28922,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -28959,9 +28952,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29011,7 +29004,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29039,16 +29032,21 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29070,9 +29068,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29085,7 +29088,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29113,20 +29116,15 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29148,13 +29146,8 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29166,8 +29159,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29188,22 +29181,11 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29226,7 +29208,20 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29238,9 +29233,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29267,9 +29261,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29281,9 +29274,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29310,9 +29303,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/writedb.hpp:49, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29325,8 +29318,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29354,8 +29347,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29368,9 +29361,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29398,9 +29390,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29461,6 +29452,49 @@ /bin/ln -f .id2_split.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o @@ -29470,7 +29504,106 @@ /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread +/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio bi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o +/bin/rm -f libxobjutil.so .libxobjutil.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxobjutil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxobjutil.so +/bin/ln -f .xobjutil.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xobjutil.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' +cd objtools/seqmasks_io/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/dbindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +cd objtools/alnmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/edit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr TMPL=alnmgr -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/edit TMPL=edit -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +-lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader-static.dep @@ -29478,43 +29611,77 @@ /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILmake[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpcd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp -o promote.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/field_handler.cpp -o field_handler.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_object.cpp -o apply_object.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Dcd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29536,15 +29703,21 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/writer.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29565,20 +29738,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/writer.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29600,17 +29768,16 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/reader.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29632,161 +29799,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/reader.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -bi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o -/bin/rm -f libxobjutil.so .libxobjutil.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxobjutil.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxobjutil.so -/bin/ln -f .xobjutil.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xobjutil.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -cd objtools/seqmasks_io/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/dbindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/alnmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/edit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/edit TMPL=edit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr TMPL=alnmgr -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp -o promote.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/field_handler.cpp -o field_handler.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_object.cpp -o apply_object.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Dmake[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29807,16 +29827,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29838,40 +29857,22 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29893,30 +29894,24 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gene_utils.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/reader.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29939,17 +29934,27 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gene_utils.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager_impl.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/util/cache/icache.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/reader.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29970,7 +29975,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -29980,8 +29993,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/field_handler.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp:45: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30006,16 +30021,23 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/field_handler.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp:45: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/cds_fix.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30037,16 +30059,24 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/cds_fix.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_object.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30067,13 +30097,6 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -30093,17 +30116,7 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/autodef_with_tax.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/autodef_with_tax.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())producible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -30115,21 +30128,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -; + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_seqid.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -30151,20 +30160,34 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/autodef_with_tax.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/autodef_with_tax.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_seqid.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_object.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30185,10 +30208,28 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30210,16 +30251,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30235,7 +30274,17 @@ from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_builders.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelibIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: w/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -30265,7 +30314,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_builders.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.arning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -30276,8 +30329,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seqid_guesser.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30304,16 +30360,24 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seqid_guesser.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_converters.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_converters.cpp:51: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30336,13 +30400,12 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/mail_report.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gene_utils.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30364,13 +30427,24 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gene_utils.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/mail_report.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30379,12 +30453,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/autodef_with_tax.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/autodef_with_tax.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30407,26 +30480,11 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_converters.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_converters.cpp:51: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible build ^ + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -30444,34 +30502,23 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41s [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might preveIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/string_constraint.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/string_constraint.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_desc_field.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - nt reproducible builds [-Wdate-time] - ^ + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -30493,10 +30540,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/string_constraint.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/string_constraint.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_desc_field.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30507,9 +30552,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_seqid.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/string_constraint.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/string_constraint.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30535,22 +30580,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_seqid.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/string_constraint.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/string_constraint.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30560,10 +30592,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gb_block_field.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30580,32 +30610,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_serial.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30631,21 +30646,44 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_serial.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_desc_field.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gb_block_field.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/autodef.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/autodef_with_tax.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/autodef_with_tax.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30666,25 +30704,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_desc_field.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/cds_fix.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30710,22 +30740,20 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/cds_fix.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30747,13 +30775,19 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/serial/impl/stltypes.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/serial/serialimpl.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30764,10 +30798,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30793,10 +30827,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30809,9 +30843,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30839,9 +30871,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30851,12 +30881,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/field_handler.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30881,12 +30907,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/field_handler.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30897,10 +30919,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30926,10 +30948,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -30941,22 +30963,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdbIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmapprint.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:25In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_generators.cpp:47: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/loc_edit.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1_dataextract.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 0:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -30964,26 +30986,39 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might preven/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/t reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ver ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" migsion.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmapprint.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapht prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -30992,32 +31027,45 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + p.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, +from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_generators.cpp:47: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/loc_edit.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_message.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seq/seq_loc_mapper_base.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_converters.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_converters.cpp:51: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -31069,12 +31117,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_generators.cpp:47: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31100,12 +31144,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_generators.cpp:47: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31117,10 +31157,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_serial.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_serial.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31143,15 +31183,36 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/writer.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31160,6 +31221,9 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" m const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31167,21 +31231,34 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ +/build/ncbi-blast+-2.8.ight prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + 1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31194,65 +31271,29 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_serial.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_serial.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_converters.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_converters.cpp:51: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31274,14 +31315,7 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31292,11 +31326,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmapprint.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31322,11 +31355,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmapprint.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31337,9 +31369,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/loc_edit.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seqid_guesser.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31365,28 +31397,13 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/loc_edit.hpp:35, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seqid_guesser.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_object.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31400,11 +31417,7 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_object.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31418,8 +31431,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31428,6 +31442,14 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31448,23 +31470,24 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/writer.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -31483,12 +31506,9 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31501,10 +31521,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31532,10 +31552,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31547,11 +31567,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31578,11 +31595,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31594,26 +31608,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gb_block_field.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31638,29 +31636,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gb_block_field.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31671,12 +31652,31 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp:45: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83:In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -31686,6 +31686,9 @@ CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/bui_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31694,30 +31697,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:ld/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] @@ -31726,15 +31716,16 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/st77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +atic_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31746,11 +31737,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31777,28 +31767,42 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp:45: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:148:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + for (ssize_t i = 0; i < oids2iterate.size(); i++) { + ~~^~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:496:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException) { + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static void ncbi::objects::edit::CStructuredCommentField::ReorderFields(ncbi::objects::CUser_object&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:515:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException) { + ^~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -llmdb -lpthread -ldl -lm -lpthread -o gene_info_reader +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f gene_info_reader /build/ncbi-blast+-2.8.1/c++/BUILD/bin/gene_info_reader +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +E_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, @@ -31807,8 +31811,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31837,12 +31841,35 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp: In static member function 'static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::__cxx11::string)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable 'normal' set but not used [-Wunused-but-set-variable] + CTempString normal = GetNormalizedDBLinkFieldName(label); + ^~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': +/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + seq1->m_SeqIdx == seq2->m_SeqIdx && + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + seq1->m_ChildIdx < seq2->m_ChildIdx; + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] + int best_fit_size = -1; + ^~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': +/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + seq1->m_SeqIdx == seq2->m_SeqIdx && + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + seq1->m_ChildIdx < seq2->m_ChildIdx; + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o @@ -31854,54 +31881,35 @@ /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + match1->m_ChainScore == match2->m_ChainScore && + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + match1->m_Score > match2->m_Score || + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + (aln_seq1->m_StrandScore > 0 && + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + strand1 == eNa_strand_minus || + ~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + aln_seq2->m_StrandScore > 0 && + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + strand2 == eNa_strand_minus || + ~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + aln_seq2->m_StrandScore < 0 && + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + strand2 != eNa_strand_minus)) { + ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -31909,10 +31917,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -31939,18 +31948,42 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:148:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - for (ssize_t i = 0; i < oids2iterate.size(); i++) { - ~~^~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] + if (start_its_i->second->first != -1) { + ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + if (plus && prev_start_plus_len < start || + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': +/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + seq1->m_SeqIdx == seq2->m_SeqIdx && + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + seq1->m_ChildIdx < seq2->m_ChildIdx; + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); @@ -31974,18 +32007,11 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32007,16 +32033,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32044,55 +32067,6 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - match1->m_ChainScore == match2->m_ChainScore && - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - match1->m_Score > match2->m_Score || - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - (aln_seq1->m_StrandScore > 0 && - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - strand1 == eNa_strand_minus || - ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - aln_seq2->m_StrandScore > 0 && - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - strand2 == eNa_strand_minus || - ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - aln_seq2->m_StrandScore < 0 && - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - strand2 != eNa_strand_minus)) { - ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmix.cpp:38: -/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': -/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - seq1->m_SeqIdx == seq2->m_SeqIdx && - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - seq1->m_ChildIdx < seq2->m_ChildIdx; - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -llmdb -lpthread -ldl -lm -lpthread -o gene_info_reader -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f gene_info_reader /build/ncbi-blast+-2.8.1/c++/BUILD/bin/gene_info_reader -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - for (TNumrow row = 0; row < selected_rows.size(); row++) { - ~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp: In static member function 'static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::__cxx11::string)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable 'normal' set but not used [-Wunused-but-set-variable] - CTempString normal = GetNormalizedDBLinkFieldName(label); - ^~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] - unsigned long tmp; - ^~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -32100,9 +32074,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32129,9 +32104,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32140,64 +32116,10 @@ /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmerger.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': -/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - seq1->m_SeqIdx == seq2->m_SeqIdx && - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - seq1->m_ChildIdx < seq2->m_ChildIdx; - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - CSeqFormatterConfig config = CSeqFormatterConfig()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - struct NCBI_DEPRECATED CSeqFormatterConfig { - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - struct NCBI_DEPRECATED CSeqFormatterConfig { - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - CSeqFormatterConfig config = CSeqFormatterConfig()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - struct NCBI_DEPRECATED CSeqFormatterConfig { - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - struct NCBI_DEPRECATED CSeqFormatterConfig { - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - CSeqFormatterConfig config /* = CSeqFormatterConfig() */) - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - struct NCBI_DEPRECATED CSeqFormatterConfig { - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - struct NCBI_DEPRECATED CSeqFormatterConfig { - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] - if (start_its_i->second->first != -1) { - ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + for (TNumrow row = 0; row < selected_rows.size(); row++) { + ~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] @@ -32205,17 +32127,21 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp: In function 'void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable 'taxid' [-Wunused-variable] - int taxid = 0; - ^~~~~ /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': +NDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o +/usr/bin/g++ -std=gnu+/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp:649:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ @@ -32230,10 +32156,6 @@ /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp: In member function 'std::__cxx11::string ncbi::CBlastDBExtractor::ExtractLeafTaxIds()': -/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: variable 'taxids_iter' set but not used [-Wunused-but-set-variable] - set::iterator taxids_iter = taxids.begin(); - ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp: In function 'bool ncbi::objects::edit::ApplyPolicyToFeature(const ncbi::objects::edit::CLocationEditPolicy&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool)': /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/loc_edit.cpp:882:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { @@ -32249,21 +32171,47 @@ /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/cds_fix.hpp:69:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] - remove_trailingX); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:52: -/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here - static void TranslateCdregion(string& prot, - ^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] - remove_trailingX); +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/mail_report.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:52: -/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here - static void TranslateCdregion(string& prot, - ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/mail_report.hpp:35, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustProteinFeaturePartialsToMatchCDS(ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_feat&)': /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:411:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); @@ -32292,10 +32240,6 @@ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] - int best_fit_size = -1; - ^~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:490:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ @@ -32321,6 +32265,10 @@ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:451:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp: In member function 'std::__cxx11::string ncbi::CBlastDBExtractor::ExtractLeafTaxIds()': +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: variable 'taxids_iter' set but not used [-Wunused-but-set-variable] + set::iterator taxids_iter = taxids.begin(); + ^~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp: In function 'void ncbi::objects::edit::s_AdjustForUTR(const ncbi::objects::CSeq_feat&, int, int, ncbi::objects::CSeq_loc&, bool&, bool&, ncbi::objects::CScope&)': /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:646:65: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { @@ -32334,66 +32282,6 @@ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/cds_fix.cpp:666:65: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:496:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException) { - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static void ncbi::objects::edit::CStructuredCommentField::ReorderFields(ncbi::objects::CUser_object&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/struc_comm_field.cpp:515:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException) { - ^~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': -/build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - seq1->m_SeqIdx == seq2->m_SeqIdx && - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - seq1->m_ChildIdx < seq2->m_ChildIdx; - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - if (plus && prev_start_plus_len < start || - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); @@ -32409,23 +32297,74 @@ /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -llmdb -lpthread -ldl -lm -lpthread -o seqdb_perf -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f seqdb_perf /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_perf -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + CSeqFormatterConfig config = CSeqFormatterConfig()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + struct NCBI_DEPRECATED CSeqFormatterConfig { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + struct NCBI_DEPRECATED CSeqFormatterConfig { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + CSeqFormatterConfig config = CSeqFormatterConfig()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + struct NCBI_DEPRECATED CSeqFormatterConfig { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + struct NCBI_DEPRECATED CSeqFormatterConfig { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + CSeqFormatterConfig config /* = CSeqFormatterConfig() */) + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + struct NCBI_DEPRECATED CSeqFormatterConfig { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + struct NCBI_DEPRECATED CSeqFormatterConfig { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] + remove_trailingX); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:52: +/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here + static void TranslateCdregion(string& prot, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] + remove_trailingX); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/promote.cpp:52: +/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here + static void TranslateCdregion(string& prot, + ^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] + unsigned long tmp; + ^~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32451,10 +32390,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_ci.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_seqid.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32462,9 +32401,10 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alntext.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feattable_edit.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32487,9 +32427,10 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alntext.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feattable_edit.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32500,12 +32441,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/score_builder_base.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32531,37 +32469,23 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/score_builder_base.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f seqdb_demo /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_demo -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blast_services_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blast_services_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_services_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feattable_edit.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32586,20 +32510,38 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feattable_edit.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_aln.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/sparse_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - if (left_seg < 0 || seg > right_seg && right_seg > 0) { - ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - if (left_seg < 0 || seg > right_seg && right_seg > 0) { - ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] + while (descr_insert_order[index] != 0) + ^ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] + if (descr_insert_order[index] >= size()) + ^ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + if (descr_insert_order[index] >= size()) + ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] + resize(descr_insert_order[index], kMax_Char); + ^ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] + at(descr_insert_order[index]) = index; + ^ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -llmdb -lpthread -ldl -lm -lpthread -o seqdb_perf +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f seqdb_perf /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_perf +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -32641,57 +32583,12 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o -/bin/rm -f libwritedb.so .libwritedb.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libwritedb.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libwritedb.so -/bin/ln -f .writedb.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.writedb.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] - while (descr_insert_order[index] != 0) - ^ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] - if (descr_insert_order[index] >= size()) - ^ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - if (descr_insert_order[index] >= size()) - ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] - resize(descr_insert_order[index], kMax_Char); - ^ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] - at(descr_insert_order[index]) = index; - ^ -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/seqid_guesser.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32714,43 +32611,20 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/seqid_guesser.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f seqdb_demo /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_demo +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -32758,9 +32632,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/seqid_guesser.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32787,23 +32660,51 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/seqid_guesser.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/taxon3.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/remote_updater.cpp:36: +kg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o +/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libseqmasks_io.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libseqmasks_io.so +/bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.seqmasks_io.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' +cd algo/winmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/winmask TMPL=xalgowinmask -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32824,21 +32725,10 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/taxon3.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/remote_updater.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32859,21 +32749,10 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32894,19 +32773,6 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -32914,9 +32780,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32943,23 +32809,16 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -32980,31 +32839,9 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -+11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp -o mail_report.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/source_edit.cpp -o source_edit.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/publication_edit.cpp:33: +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33025,23 +32862,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/publication_edit.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/gap_trim.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gap_trim.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33067,36 +32897,26 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/gap_trim.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gap_trim.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/external_annots.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/external_annots.cpp:36: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33114,60 +32934,16 @@ /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ~~~~~~^~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] - switch (seqmap_ci.GetType()) { - ^ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2785:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - if (pos >= start && pos < start + len) { - ~~~~^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2785:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - if (pos >= start && pos < start + len) { - ~~~~^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2989:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] - else if (seg_start < cut_from) { - ~~~~~~~~~~^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2992:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] - else if (seg_start >= cut_from && - ~~~~~~~~~~^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:752:44: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] - while(start < start2 + len * width2) { - ~~~~^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] - pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistd.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/parse_text_options.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here - SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - ^~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] - pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistd.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/parse_text_options.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here - SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - ^~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feature_propagate.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33193,52 +32969,40 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feature_propagate.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -kg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o -/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libseqmasks_io.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libseqmasks_io.so -/bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.seqmasks_io.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' -cd algo/winmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/winmask TMPL=xalgowinmask -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33267,10 +33031,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33284,7 +33045,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33313,19 +33075,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33342,10 +33097,24 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33366,10 +33135,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::__cxx11::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::__cxx11::string&, const TSignedRange&, bool) const': -/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - if (translate && aln_range.GetLength() >= trim_from + trim_to) { - ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -33379,7 +33159,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_min.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33408,7 +33189,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_min.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33417,25 +33199,14 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_mods.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/score_builder_base.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33463,13 +33234,54 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/score_builder_base.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] + switch (seqmap_ci.GetType()) { + ^ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/taxon3.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/remote_updater.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -33486,15 +33298,50 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_mods.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/seqfeat__.hpp:2, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/itaxon3.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon3/taxon3.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/remote_updater.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2785:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + if (pos >= start && pos < start + len) { + ~~~~^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2785:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + if (pos >= start && pos < start + len) { + ~~~~^~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + if (left_seg < 0 || seg > right_seg && right_seg > 0) { + ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2989:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] + else if (seg_start < cut_from) { + ~~~~~~~~~~^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/seq_entry_edit.cpp:2992:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] + else if (seg_start >= cut_from && + ~~~~~~~~~~^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + if (left_seg < 0 || seg > right_seg && right_seg > 0) { + ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp -o mail_report.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/source_edit.cpp -o source_edit.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/publication_edit.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33515,9 +33362,27 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/publication_edit.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnmerger.cpp:752:44: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] + while(start < start2 + len * width2) { + ~~~~^~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/gap_trim.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gap_trim.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33538,16 +33403,20 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/gap_trim.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/gap_trim.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/external_annots.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33568,22 +33437,109 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window.cpp:38: +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/external_annots.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] + pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistd.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/parse_text_options.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here + SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + ^~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] + pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistd.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/edit/parse_text_options.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/parse_text_options.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here + SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + ^~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o +/bin/rm -f libwritedb.so .libwritedb.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libwritedb.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libwritedb.so +/bin/ln -f .writedb.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.writedb.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33604,6 +33560,11 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -33611,10 +33572,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33641,10 +33601,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33656,11 +33615,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33687,26 +33644,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33718,9 +33658,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33747,16 +33687,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feature_propagate.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33782,12 +33728,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/feature_propagate.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33796,9 +33739,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_object_description.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33822,41 +33768,16 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_object_description.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o -/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp -ar cr libncbi_xreader_id2.a reader_id2.o -/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id2.a -/bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id2-static.dep -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id2.so -/bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id2.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so -/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - for (int j = i + 1; j < spans.size(); j++) - ~~^~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -33888,20 +33809,10 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o -/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp -ar cr libncbi_xreader_id1.a reader_id1.o -/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id1.a -/bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id1-static.dep -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id1.so -/bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id1.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp: In function 'void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable 'taxid' [-Wunused-variable] + int taxid = 0; + ^~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, @@ -33926,11 +33837,11 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_mods.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33951,33 +33862,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o -/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o -/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o -/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o -/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o -/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgoblastdbindex.so -/bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgoblastdbindex.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/apply_mods.cpp:39: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_object_description.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -33998,17 +33897,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_object_description.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34029,14 +33932,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + for (int j = i + 1; j < spans.size(); j++) + ~~^~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::__cxx11::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::__cxx11::string&, const TSignedRange&, bool) const': +/build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + if (translate && aln_range.GetLength() >= trim_from + trim_to) { + ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blast_services_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blast_services_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_services_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' 2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o @@ -34082,6 +33992,92 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o +/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o +/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o +/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o +/usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o +/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgoblastdbindex.so +/bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgoblastdbindex.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, @@ -34130,21 +34126,6 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: @@ -34183,6 +34164,21 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_ostat.hpp:42, from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_counts_converter.cpp:40: @@ -34254,21 +34250,39 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o -/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libblastdb_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libblastdb_format.so -/bin/ln -f .blastdb_format.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.blastdb_format.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] r_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o @@ -34277,14 +34291,20 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o +/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp +ar cr libncbi_xreader_id2.a reader_id2.o +/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id2.a +/bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id2-static.dep +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id2.so +/bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id2.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -34324,9 +34344,8 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34347,16 +34366,6 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -34398,38 +34407,69 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat.cpp:32: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so +/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o +/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp +ar cr libncbi_xreader_id1.a reader_id1.o +/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id1.a +/bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id1-static.dep +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xreader_id1.so +/bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_id1.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o +/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libblastdb_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libblastdb_format.so +/bin/ln -f .blastdb_format.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.blastdb_format.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, @@ -34437,14 +34477,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34471,10 +34505,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/winmask/seq_masker_istat.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34488,8 +34522,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34518,8 +34552,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:56, from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34539,20 +34573,17 @@ /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::__cxx11::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] - static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) - ^~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/genbank/gbloader.hpp:40, from /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: @@ -34615,31 +34646,42 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -ix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o -/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o amake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/build/ncbi-blast+-2.8.1/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::__cxx11::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] + static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) + ^~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] + if( k == 0U || k > (Uint4)(2*unit_size - 1) ) + ~^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp: In static member function 'static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)': +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + if(type == eAny || type >= eGenerateMasksWithDuster) + ^~ +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + arg_desc.AddDefaultKey( "dust_level", "dust_level", + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] + string id_str = sequence::GetTitle( bsh ); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here + string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] + string id_str = sequence::GetTitle( bsh ); + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:37: +/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here + string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); + ^~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o writedb_lmdb_unit_test /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f writedb_lmdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/writedb_lmdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -lnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxalnmgr.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalnmgr.so -/bin/ln -f .xalnmgr.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalnmgr.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] - if( k == 0U || k > (Uint4)(2*unit_size - 1) ) - ~^~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); @@ -34665,21 +34707,15 @@ /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp: In static member function 'static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)': -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - if(type == eAny || type >= eGenerateMasksWithDuster) - ^~ -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - arg_desc.AddDefaultKey( "dust_level", "dust_level", - ^~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_lmdb_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f seqdb_lmdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_lmdb_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -In file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: +ix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o +/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o aIn file included from /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestNoFormatSpecifier::test_method()': /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:55:41: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] BOOST_REQUIRE_THROW(CSeqFormatter f(format_spec, db, std::cout), @@ -34782,21 +34818,6 @@ /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] - string id_str = sequence::GetTitle( bsh ); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here - string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] - string id_str = sequence::GetTitle( bsh ); - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_util.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here - string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); - ^~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestGiGivenPIG::test_method()': /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:259:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); @@ -34843,6 +34864,19 @@ /build/ncbi-blast+-2.8.1/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_lmdb_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f seqdb_lmdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_lmdb_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +lnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxalnmgr.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalnmgr.so +/bin/ln -f .xalnmgr.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalnmgr.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/alnmgr' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o @@ -34863,26 +34897,18 @@ /bin/ln -f libxobjedit.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxobjedit.so /bin/ln -f .xobjedit.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xobjedit.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o blastdb_format_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdb_format_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -cd objtools/cleanup/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/cleanup/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup TMPL=cleanup -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup TMPL=cleanup -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o @@ -34891,11 +34917,9 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_author.cpp:37: +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34917,16 +34941,22 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_author.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/gene_qual_normalization.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34948,11 +34978,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/gene_qual_normalization.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34960,8 +34990,11 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp:44: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34984,8 +35017,11 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp:44: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -34993,11 +35029,8 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp:44: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35020,11 +35053,8 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp:44: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35068,22 +35098,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -mat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o -/bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxalgowinmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgowinmask.so -/bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgowinmask.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35106,11 +35128,11 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35120,9 +35142,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35147,9 +35170,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35157,10 +35181,8 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/gene_qual_normalization.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_author.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35183,10 +35205,8 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/gene_qual_normalization.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_author.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35194,12 +35214,11 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35222,28 +35241,35 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_ci.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +mat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o +/bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxalgowinmask.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxalgowinmask.so +/bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xalgowinmask.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' -cd algo/blast/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api TMPL=xblast -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api TMPL=xblast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o @@ -35331,8 +35357,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35356,8 +35382,8 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35366,8 +35392,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_cxx.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35391,8 +35417,8 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_cxx.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35401,7 +35427,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_aux.cpp:49: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35425,7 +35455,11 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_aux.cpp:49: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35434,8 +35468,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_aux.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35459,8 +35492,7 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_aux.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35470,8 +35502,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_handle.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35496,8 +35527,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_handle.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35508,9 +35538,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/disc_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/disc_nucl_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35536,9 +35565,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/disc_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/disc_nucl_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35549,10 +35577,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/psiblast_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35578,10 +35603,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/psiblast_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35593,34 +35615,6 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_prot_options.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -35655,26 +35649,15 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_prot_options.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastx_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastx_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/disc_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35700,9 +35683,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastx_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastx_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/disc_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35713,10 +35696,21 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_nucl_options.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastn_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastn_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastx_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35743,27 +35737,12 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastn_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastn_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastx_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/rpstblastn_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/rpstblastn_options.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35785,10 +35764,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/rpstblastn_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/rpstblastn_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35799,8 +35776,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_nucl_options.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/psiblast_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35826,8 +35805,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_nucl_options.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/psiblast_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35839,8 +35820,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_rps_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastn_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35867,12 +35849,46 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_rps_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/tblastn_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o blastdb_format_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdb_format_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::__cxx11::string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:909:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + if (rslt[0] != start) + ~~~~~~~~^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::__cxx11::string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:948:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + if (rslt[0] != start) + ~~~~~~~~^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::__cxx11::string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:975:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + if (rslt[0] != start) + ~~~~~~~~^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { + ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { + ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { + ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] + if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { + ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ @@ -35891,6 +35907,13 @@ /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function 'bool ncbi::blast::CBlastOptionsLocal::Validate() const': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] + else + ^~~~ +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' + return true; + ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o @@ -35905,63 +35928,51 @@ /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::__cxx11::string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:909:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - if (rslt[0] != start) - ~~~~~~~~^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::__cxx11::string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:948:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - if (rslt[0] != start) - ~~~~~~~~^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::__cxx11::string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp:975:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - if (rslt[0] != start) - ~~~~~~~~^~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/align_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/simple/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null -cd app/dustmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/align_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/winmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/simple/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/dustmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/winmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/simple TMPL=xobjsimple -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/simple TMPL=xobjsimple -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format TMPL=align_format -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/dustmasker TMPL=dustmasker -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/winmasker TMPL=winmasker -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/dustmasker TMPL=dustmasker -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format TMPL=align_format -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/winmasker TMPL=winmasker -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o @@ -35970,9 +35981,9 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o -/usIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showdefline.cpp:38: +/usIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -35993,25 +36004,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showdefline.cpp:38: +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showdefline.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36032,30 +36033,10 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/tabular.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36068,6 +36049,16 @@ CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showdefline.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36077,36 +36068,21 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/tabular.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { - ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { - ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { - ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] - if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { - ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/main.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/taxFormat.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36127,15 +36103,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/main.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, + from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/taxFormat.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36157,18 +36139,42 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/simple/simple_om.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/simple/simple_om.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFOIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_app.hpp:36, from /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/main.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36236,6 +36242,17 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/simple/simple_om.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/simple/simple_om.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -36243,8 +36260,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/aln_printer.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36271,49 +36287,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/taxFormat.cpp:33: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/Taxon2_data.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1__.hpp:7, - from /build/ncbi-blast+-2.8.1/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/taxFormat.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/aln_printer.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36365,9 +36339,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/vectorscreen.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/vectorscreen.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/align_format_util.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36393,17 +36367,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/vectorscreen.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/vectorscreen.cpp:33: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/align_format_util.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36425,8 +36404,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/readers/fasta.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36438,7 +36422,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/aln_printer.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/tabular.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36465,15 +36453,24 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/aln_printer.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/tabular.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/simple/simple_om.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/simple/simple_om.cpp:33: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/vectorscreen.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/vectorscreen.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36493,27 +36490,29 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/simple/simple_om.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/simple/simple_om.cpp:33: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/vectorscreen.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/vectorscreen.cpp:33: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/align_format_util.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/rpstblastn_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36535,33 +36534,27 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/align_format/align_format_util.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/align_format_util.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/rpstblastn_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function 'bool ncbi::blast::CBlastOptionsLocal::Validate() const': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] - else - ^~~~ -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' - return true; - ^~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36587,9 +36580,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36598,7 +36591,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/pssm_engine.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36622,7 +36619,11 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/pssm_engine.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36672,8 +36673,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_blast.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/pssm_engine.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36697,8 +36697,7 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_blast.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/pssm_engine.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -36710,7 +36709,11 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DND/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp:2700:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + if (abs((long int)this_start - (long int)prev_end) < min_len) { + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, @@ -36753,6 +36756,41 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_blast.cpp:39: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_blast.cpp:39: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: @@ -36823,10 +36861,13 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/cleanup.cpp:2700:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - if (abs((long int)this_start - (long int)prev_end) < min_len) { - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::__cxx11::string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:6394:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { + ~~~~~~~~~~^~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:6408:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + if( first_pos > last_pos ) { + ~~~~~~~~~~^~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -36870,6 +36911,25 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:7621:10: warning: unused variable 'changed' [-Wunused-variable] + bool changed = false; + ^~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_GBQualToOrgRef(ncbi::objects::COrg_ref&, ncbi::objects::CSeq_feat&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:7880:10: warning: variable 'any_conversions' set but not used [-Wunused-but-set-variable] + bool any_conversions = false; + ^~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnaFeatBC(ncbi::objects::CRNA_ref&, ncbi::objects::CSeq_feat&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:8506:102: warning: enum constant in boolean context [-Wint-in-bool-context] + (rna.GetType() == CRNA_ref::eType_mRNA || rna.GetType() == CRNA_ref::eType_rRNA || CRNA_ref::eType_tRNA) && + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_FixStructuredCommentKeywords(ncbi::objects::CBioseq&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:9385:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException) { + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:9387:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + } catch (CException) { + ^~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -36913,25 +36973,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::__cxx11::string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:6394:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { - ~~~~~~~~~~^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:6408:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - if( first_pos > last_pos ) { - ~~~~~~~~~~^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:7621:10: warning: unused variable 'changed' [-Wunused-variable] - bool changed = false; - ^~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_GBQualToOrgRef(ncbi::objects::COrg_ref&, ncbi::objects::CSeq_feat&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:7880:10: warning: variable 'any_conversions' set but not used [-Wunused-but-set-variable] - bool any_conversions = false; - ^~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnaFeatBC(ncbi::objects::CRNA_ref&, ncbi::objects::CSeq_feat&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:8506:102: warning: enum constant in boolean context [-Wint-in-bool-context] - (rna.GetType() == CRNA_ref::eType_mRNA || rna.GetType() == CRNA_ref::eType_rRNA || CRNA_ref::eType_tRNA) && - ^~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -37012,13 +37053,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_FixStructuredCommentKeywords(ncbi::objects::CBioseq&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:9385:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException) { - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp:9387:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - } catch (CException) { - ^~~~~~~~~~ EBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o @@ -37106,17 +37140,19 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/simple/simple_om.cpp -o simple_om.o +/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxobjsimple.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxobjsimple.so +/bin/ln -f .xobjsimple.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xobjsimple.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:2048:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException e){ ^ -/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:4387:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:4387:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -37195,6 +37231,13 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:4387:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/showalign.cpp:4387:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -37234,16 +37277,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/simple/simple_om.cpp -o simple_om.o -/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxobjsimple.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxobjsimple.so -/bin/ln -f .xobjsimple.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xobjsimple.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_iteration.cpp -o psIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, @@ -37282,14 +37323,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psiblast_iteration.cpp -o psIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, @@ -37515,6 +37549,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/main.cpp -o main.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o dustmasker +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f dustmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin/dustmasker +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -37558,14 +37600,19 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/main.cpp -o main.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o dustmasker -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f dustmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin/dustmasker -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/main.cpp -o main.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o windowmasker +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f windowmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin/windowmasker +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] + while (k < m_Msa->dimensions->query_length && + ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/version.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -37588,19 +37635,6 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] - while (k < m_Msa->dimensions->query_length && - ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/main.cpp -o main.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o windowmasker -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f windowmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin/windowmasker -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' iblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o @@ -37687,9 +37721,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/search_strategy.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/search_strategy.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/setup_factory.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -37713,9 +37747,9 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/search_strategy.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/search_strategy.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/setup_factory.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -37724,9 +37758,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/setup_factory.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/search_strategy.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/search_strategy.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -37750,9 +37784,9 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/setup_factory.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/search_strategy.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/search_strategy.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -37835,14 +37869,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -t+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCEIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, @@ -37879,7 +37906,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +t+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCEIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, @@ -37961,10 +37995,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_search.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_search.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/query_data.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -37988,10 +38020,8 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_search.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_search.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/query_data.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38000,8 +38030,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/query_data.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_search.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_search.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38025,8 +38057,10 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/query_data.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_search.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/remote_search.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38373,7 +38407,14 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +bi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blasIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, @@ -38416,14 +38457,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -bi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blasIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, @@ -38748,36 +38782,37 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.so .libxblast.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxblast.so -/bin/ln -f .xblast.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xblast.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fsIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,-rpath,/usr/limake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f seqdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +r/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o +/bin/rm -f libalign_format.so .libalign_format.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libalign_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libalign_format.so +/bin/ln -f .align_format.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.align_format.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38800,14 +38835,15 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38828,16 +38864,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/mhfile.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38858,33 +38894,20 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/mhfile.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring #pragma ivdep [-Wunknown-pragmas] - #pragma ivdep - -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring #pragma ivdep [-Wunknown-pragmas] - #pragma ivdep - -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring #pragma ivdep [-Wunknown-pragmas] - #pragma ivdep - In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38906,20 +38929,19 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38940,20 +38962,20 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -38975,55 +38997,44 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring #pragma ivdep [-Wunknown-pragmas] - #pragma ivdep - -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - if (hits.size() < numHashes) - ~~~~~~~~~~~~^~~~~~~~~~~ -r/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o -/bin/rm -f libalign_format.so .libalign_format.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libalign_format.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libalign_format.so -/bin/ln -f .align_format.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.align_format.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -cd algo/blast/blastinput/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +b/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxblast.so +/bin/ln -f .xblast.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xblast.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' +cd algo/blast/blastinput/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput TMPL=blastinput -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput TMPL=blastinput -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o @@ -39032,21 +39043,25 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o -/usr/bin/g++ -std=gnu++1/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - if (last_oid == *i) - ~~~~~~~~~^~~~~ -1 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o +/usr/bin/g++ -std=gnu++1make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fs1 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39069,7 +39084,11 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39077,7 +39096,11 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39100,7 +39123,11 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39112,7 +39139,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39139,19 +39166,13 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/version.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_args.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39172,20 +39193,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objostr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39206,15 +39222,27 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastn_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39235,14 +39263,23 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastn_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/version.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_args.cpp:40: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/mhfile.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39263,14 +39300,25 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/mhfile.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring #pragma ivdep [-Wunknown-pragmas] + #pragma ivdep + +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring #pragma ivdep [-Wunknown-pragmas] + #pragma ivdep + +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring #pragma ivdep [-Wunknown-pragmas] + #pragma ivdep + +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39291,13 +39339,18 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_args.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39305,11 +39358,12 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39332,19 +39386,21 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39367,11 +39423,8 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39383,8 +39436,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastn_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastn_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastx_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39405,28 +39458,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastn_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastn_args.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39448,14 +39488,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39466,20 +39505,14 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_args.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastx_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastp_args.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39500,14 +39533,7 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastp_args.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39555,13 +39581,14 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39583,13 +39610,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39664,34 +39692,6 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, @@ -39703,19 +39703,6 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, @@ -39724,8 +39711,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39752,21 +39739,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastx_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastx_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39788,17 +39776,21 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blastx_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blastx_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring #pragma ivdep [-Wunknown-pragmas] + #pragma ivdep + In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -39806,8 +39798,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39834,19 +39826,16 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f seqdb_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqdb_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + if (hits.size() < numHashes) + ~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, @@ -39854,8 +39843,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39882,12 +39871,16 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + if (last_oid == *i) + ~~~~~~~~~^~~~~ share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp @@ -39897,17 +39890,17 @@ /bin/ln -f .xcleanup.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -cd objtools/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/format TMPL=xformat -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/objtools/format TMPL=xformat -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o @@ -39916,60 +39909,15 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/defline_item.cpp -o defline_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp -o feature_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_item.cpp -o genome_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/locus_item.cpp -o locus_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp -o primary_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/reference_item.cpp -o reference_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/segment_item.cpp -o segment_item.o -/usr/biIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/accession_item.cpp:40: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/accession_item.cpp:40: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -39994,8 +39942,10 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40007,7 +39957,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/defline_item.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/accession_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40034,7 +39984,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/defline_item.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/accession_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40044,10 +39994,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/basecount_item.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40072,10 +40020,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_vector.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/basecount_item.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40124,10 +40070,11 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/locus_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/date_item.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40150,10 +40097,11 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/locus_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/date_item.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40164,7 +40112,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ctrl_items.cpp:44: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/keywords_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40190,7 +40138,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ctrl_items.cpp:44: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/keywords_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40198,12 +40146,7 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/reference_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40224,13 +40167,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/reference_item.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/keywords_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40252,23 +40203,12 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/keywords_item.cpp:40: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40279,8 +40219,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/date_item.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/dbsource_item.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40306,8 +40246,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/date_item.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/dbsource_item.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40316,8 +40256,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Gb_qual.hpp:52, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:68: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ctrl_items.cpp:44: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40341,20 +40282,22 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Gb_qual.hpp:52, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:68: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ctrl_items.cpp:44: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sequence_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40376,12 +40319,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sequence_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40389,7 +40333,10 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/reference_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/locus_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40412,7 +40359,10 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/reference_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/locus_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40423,8 +40373,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/dbsource_item.cpp:49: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/segment_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40445,17 +40396,32 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_entry_handle.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/dbsource_item.cpp:49: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Gb_qual.hpp:52, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:68: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -40495,8 +40461,16 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Gb_qual.hpp:52, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:68: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, @@ -40504,6 +40478,19 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/segment_item.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40525,13 +40512,13 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/segment_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40584,8 +40571,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40612,8 +40599,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40625,8 +40612,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40653,8 +40640,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40702,160 +40689,33 @@ /build/ncbi-blast+-2.8.1/c++/src/objtools/format/keywords_item.cpp:286:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ -tack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o -/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libproteinkmer.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libproteinkmer.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libproteinkmer.so -/bin/ln -f .proteinkmer.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.proteinkmer.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -cd algo/blast/igblast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast TMPL=igblast -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j16 --jobserver-auth=7,8 all -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp:214:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { + ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp:215:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + if (this_start < (15 + last_stop) ) { + ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::__cxx11::string&, const ncbi::objects::CUser_object&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp:369:16: warning: unused variable 'is_html' [-Wunused-variable] + const bool is_html = ctx.Config().DoHTML(); + ^~~~~~~ +PIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp -o feature_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_item.cpp -o genome_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/locus_item.cpp -o locus_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp -o primary_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/reference_item.cpp -o reference_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/segment_item.cpp -o segment_item.o +/usr/biIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sequence_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40876,14 +40736,24 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sequence_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40904,19 +40774,25 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/igblast/igblast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast/igblast.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/version_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40938,19 +40814,26 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/igblast/igblast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast/igblast.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/version_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/wgs_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -40971,15 +40854,27 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/wgs_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/tsa_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41000,15 +40895,26 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/tsa_item.cpp:40: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_seqloc.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41029,15 +40935,39 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_seqloc.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:1378:28: warning: unused variable 'cfg' [-Wunused-variable] + const CFlatFileConfig& cfg = ctx.Config(); + ^~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:2012:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] + if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { + ~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CFeatureItem::x_SeqIdWriteForTable(const ncbi::objects::CBioseq&, bool, bool)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:5340:20: warning: variable 'patent' set but not used [-Wunused-but-set-variable] + const CSeq_id* patent = NULL; + ^~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:5341:20: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] + const CSeq_id* pdb = NULL; + ^~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41058,15 +40988,38 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +n/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp -o source_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/version_item.cpp -o version_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MTmake[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/context.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41087,17 +41040,49 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/context.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +tack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o +/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libproteinkmer.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libproteinkmer.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libproteinkmer.so +/bin/ln -f .proteinkmer.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.proteinkmer.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' +cd algo/blast/igblast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/util_misc.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:55: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41114,18 +41099,145 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/util_misc.hpp:33, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, + from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:55: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast TMPL=igblast -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f align_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/align_format_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: @@ -41155,6 +41267,72 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j15 --jobserver-auth=7,8 all +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: @@ -41186,24 +41364,48 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/igblast/igblast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT( ^ + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -41213,7 +41415,26 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/i)); +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/query_data.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/igblast/igblast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast/igblast.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -41223,16 +41444,36 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69nclude/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent r: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41241,26 +41482,22 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_eproducible builds [-Wdate-time] -param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41281,29 +41518,36 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::__cxx11::string&, const ncbi::objects::CUser_object&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/comment_item.cpp:369:16: warning: unused variable 'is_html' [-Wunused-variable] - const bool is_html = ctx.Config().DoHTML(); - ^~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/version_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41324,27 +41568,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/version_item.cpp:40: +In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/wgs_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/util_misc.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41366,33 +41599,21 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/wgs_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/util_misc.hpp:33, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp:214:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { - ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/primary_item.cpp:215:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - if (this_start < (15 + last_stop) ) { - ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/tsa_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_gather.cpp:47: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41416,11 +41637,10 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/tsa_item.cpp:40: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_gather.cpp:47: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41432,7 +41652,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_seqloc.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41459,7 +41680,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_seqloc.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41469,8 +41691,11 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_gather.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41495,31 +41720,31 @@ from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/Seq_feat.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_gather.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -n/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp -o source_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/version_item.cpp -o version_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:1378:28: warning: unused variable 'cfg' [-Wunused-variable] - const CFlatFileConfig& cfg = ctx.Config(); - ^~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:178:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { + ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:383:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'unsigned int' [-Wsign-compare] + if ( genome >= s_organelle_prefix_size ) { + ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/context.cpp:49: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41542,27 +41767,23 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/context.cpp:49: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:2012:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] - if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { - ~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:55: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_formatter.cpp:48: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41584,24 +41805,39 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/Name_std.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general__.hpp:5, - from /build/ncbi-blast+-2.8.1/c++/include/objects/general/general_macros.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objects/misc/sequence_macros.hpp:34, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:55: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_formatter.cpp:48: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp:1104:10: warning: unused variable 'bHtml' [-Wunused-variable] + bool bHtml = ctx.Config().DoHTML(); + ^~~~~ + -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/context.cpp -o context.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp -o gather_items.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_gather.cpp:47: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/item_formatter.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/embl_formatter.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_formatter.cpp:43: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41625,21 +41861,17 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_gather.cpp:47: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/item_formatter.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/embl_formatter.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_formatter.cpp:43: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CFeatureItem::x_SeqIdWriteForTable(const ncbi::objects::CBioseq&, bool, bool)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:5340:20: warning: variable 'patent' set but not used [-Wunused-but-set-variable] - const CSeq_id* patent = NULL; - ^~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/feature_item.cpp:5341:20: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] - const CSeq_id* pdb = NULL; - ^~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -41649,7 +41881,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_gather.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41678,7 +41910,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_gather.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:42: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41697,14 +41929,7 @@ /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1329:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ @@ -41810,147 +42035,6 @@ /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:178:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { - ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/source_item.cpp:383:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'unsigned int' [-Wsign-compare] - if ( genome >= s_organelle_prefix_size ) { - ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:41: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:41: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_formatter.cpp:48: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/util/strbuffer.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/serial/objistr.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/util/sequence.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_formatter.cpp:48: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f align_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/align_format_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: -/build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -ldl -lm -lpthread -o gapinfo_unit_test @@ -41958,20 +42042,20 @@ /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -41993,7 +42077,7 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42005,10 +42089,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/item_formatter.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/embl_formatter.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_formatter.cpp:43: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/origin_item.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42035,28 +42118,22 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/item_formatter.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/embl_formatter.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_formatter.cpp:43: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/origin_item.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/qualifiers.cpp:1104:10: warning: unused variable 'bHtml' [-Wunused-variable] - bool bHtml = ctx.Config().DoHTML(); - ^~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/ctrl_items.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_gather.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42080,92 +42157,40 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:42: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/ctrl_items.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_gather.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/context.cpp -o context.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp -o gather_items.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blastdiag_unit_test /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o gencode_singleton_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/gencode_singleton_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:1114:34: warning: unused variable 'format' [-Wunused-variable] + CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? + ^~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42187,15 +42212,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:1114:34: warning: unused variable 'format' [-Wunused-variable] - CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? - ^~~~~~ /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_CollectBioSources(ncbi::objects::CFlatGatherer::TSourceFeatSet&) const': /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:1904:13: warning: unused variable 'scope' [-Wunused-variable] CScope* scope = &ctx.GetScope(); @@ -42207,91 +42228,32 @@ /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:2999:56: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (gap_data.has_gap && gap_data.gap_start == feat_start && feat.GetFeatSubtype() == CSeqFeatData::eSubtype_gap) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/origin_item.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seq_descr_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/origin_item.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/ctrl_items.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_gather.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SubSource.hpp:53, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/BioSource.hpp:43, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/comment_item.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/ctrl_items.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_gather.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +ile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o +/bin/rm -f libblastinput.so .libblastinput.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: +/build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + ^~~~~~~~~~~~~~~ +build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/origin_item.cpp -o origin_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, @@ -42322,28 +42284,7 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/item_formatter.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/ftable_formatter.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_formatter.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/origin_item.cpp -o origin_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/util/bytesrc.hpp:39, @@ -42380,56 +42321,25 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_config.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_config.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/item_formatter.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/ftable_formatter.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/ftable_formatter.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -ile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o -/bin/rm -f libblastinput.so .libblastinput.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-zIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/alignment_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_config.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42453,68 +42363,32 @@ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/alignment_item.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_config.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp: At global scope: -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:2834:13: warning: 'bool ncbi::objects::s_IsExon(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] - static bool s_IsExon(const CSeq_feat_Handle& feat) - ^~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:2829:13: warning: 'bool ncbi::objects::s_IsSNP(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] - static bool s_IsSNP(const CSeq_feat_Handle& feat) - ^~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:829:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] - static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) - ^~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:319:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] - bool isNgNtNwNz = false; - ^~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:320:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] - bool isGED = false; - ^~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:321:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] - bool isTPA = false; - ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspfilter_culling_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/hspfilter_culling_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o gencode_singleton_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspfilter_besthit_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/hspfilter_besthit_unit_test +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42535,25 +42409,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/alignment_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42574,8 +42444,14 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/bioseq_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/context.hpp:44, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/alignment_item.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42586,20 +42462,30 @@ /bin/ln -f .blastinput.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j15 --jobserver-auth=7,8 all +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp: At global scope: +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:2834:13: warning: 'bool ncbi::objects::s_IsExon(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] + static bool s_IsExon(const CSeq_feat_Handle& feat) + ^~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:2829:13: warning: 'bool ncbi::objects::s_IsSNP(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] + static bool s_IsSNP(const CSeq_feat_Handle& feat) + ^~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_items.cpp:829:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] + static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) + ^~~~~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42621,50 +42507,73 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:319:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] + bool isNgNtNwNz = false; + ^~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:320:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] + bool isGED = false; + ^~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_generator.cpp:321:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] + bool isTPA = false; + ^~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:1983:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + } catch (CSeqVectorException) { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:2024:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + } catch (CSeqVectorException) { + ^~~~~~~~~~~~~~~~~~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp: At global scope: +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::__cxx11::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] + static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) + ^~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f aalookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/aalookup_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspfilter_culling_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastextend_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastextend_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspfilter_besthit_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j16 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j15 --jobserver-auth=7,8 all make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42685,22 +42594,17 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f aascan_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/aascan_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -42722,20 +42626,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -42779,44 +42674,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:1983:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - } catch (CSeqVectorException) { - ^~~~~~~~~~~~~~~~~~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:2024:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - } catch (CSeqVectorException) { - ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -42946,7 +42803,15 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gap_item.cpp -o gap_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blastIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, @@ -42987,27 +42852,78 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/inst_info_map.cpp:39: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/inst_info_map.cpp:39: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastengine_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastengine_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastextend_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastextend_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43029,28 +42945,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp: At global scope: -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::__cxx11::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] - static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) - ^~~~~~~~~~~~~~~~~ -SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gap_item.cpp -o gap_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blastIn file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/inst_info_map.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43071,40 +42973,58 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/inst_info_map.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o -/bin/rm -f libigblast.so .libigblast.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libigblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libigblast.so -/bin/ln -f .igblast.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.igblast.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f aascan_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/aascan_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f aalookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/aalookup_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp: In member function 'virtual void ncbi::objects::CGBSeqFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp:1025:23: warning: unused variable 'vec' [-Wunused-variable] + const CSeqVector& vec = seq.GetSequence(); + ^~~ +/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp:1028:13: warning: unused variable 'base_count' [-Wunused-variable] + TSeqPos base_count = from; + ^~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/gene_finder.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gene_finder.cpp:38: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43125,24 +43045,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/gene_finder.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gene_finder.cpp:38: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43164,7 +43075,48 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/gene_finder.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gene_finder.cpp:38: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/items/gene_finder.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43206,34 +43158,47 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp: In member function 'virtual void ncbi::objects::CGBSeqFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp:1025:23: warning: unused variable 'vec' [-Wunused-variable] - const CSeqVector& vec = seq.GetSequence(); - ^~~ -/build/ncbi-blast+-2.8.1/c++/src/objtools/format/gbseq_formatter.cpp:1028:13: warning: unused variable 'base_count' [-Wunused-variable] - TSeqPos base_count = from; - ^~~~~~~~~~ +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o +/bin/rm -f libigblast.so .libigblast.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libigblast.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libigblast.so +/bin/ln -f .igblast.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.igblast.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blasthits_unit_test +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastengine_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j15 --jobserver-auth=7,8 all make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43255,11 +43220,69 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspstream_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f hspstream_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/hspstream_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastoptions_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastoptions_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: @@ -43289,6 +43312,9 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: @@ -43319,45 +43345,11 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspstream_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f hspstream_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/hspstream_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastoptions_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastoptions_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43379,14 +43371,16 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43408,7 +43402,7 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43420,17 +43414,82 @@ /bin/ln -f proteinkmer_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/proteinkmer_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o msa2pssm_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/msa2pssm_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j15 --jobserver-auth=7,8 all +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f linkhsp_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/linkhsp_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: @@ -43460,24 +43519,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o msa2pssm_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/msa2pssm_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: @@ -43508,23 +43549,23 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f linkhsp_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/linkhsp_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o phiblast_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f phiblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: @@ -43555,23 +43596,23 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o phiblast_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f phiblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/phiblast_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o psiblast_iteration_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: @@ -43601,24 +43642,27 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o psiblast_iteration_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/psiblast_iteration_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null ++-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o +/bin/rm -f libxformat.so .libxformat.so.stamp +/usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib +/bin/ln -f libxformat.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxformat.so +/bin/ln -f .xformat.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xformat.dep +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: @@ -43649,23 +43693,58 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f ntlookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/ntlookup_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastsetup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastsetup_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j15 --jobserver-auth=7,8 all In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: @@ -43695,24 +43774,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f ntlookup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/ntlookup_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: @@ -43742,24 +43804,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastsetup_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastsetup_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: @@ -43790,26 +43834,26 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_blasthits_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f rmblast_blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rmblast_blasthits_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43831,14 +43875,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43860,14 +43904,24 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/psibl2seq_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -43889,11 +43943,18 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j15 --jobserver-auth=7,8 all In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -43937,24 +43998,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/pssmenginefreqratios_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: @@ -43985,23 +44029,40 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/psibl2seq_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastfilter_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastfilter_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f queryinfo_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j15 --jobserver-auth=7,8 all In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: @@ -44013,6 +44074,7 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44031,45 +44093,23 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o -/bin/rm -f libxformat.so .libxformat.so.stamp -/usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib -/bin/ln -f libxformat.so /build/ncbi-blast+-2.8.1/c++/BUILD/lib/libxformat.so -/bin/ln -f .xformat.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xformat.dep -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j15 --jobserver-auth=7,8 all In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34: @@ -44099,6 +44139,25 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_blasthits_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f rmblast_blasthits_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rmblast_blasthits_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -44144,24 +44203,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_traceback_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f rmblast_traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rmblast_traceback_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: @@ -44192,23 +44233,23 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o optionshandle_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f optionshandle_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/optionshandle_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_traceback_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f rmblast_traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rmblast_traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: @@ -44239,58 +44280,40 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f querydata_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/querydata_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o optionshandle_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f optionshandle_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/pssmcreate_unit_test +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o stat_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f stat_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastfilter_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastfilter_unit_test +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j15 --jobserver-auth=7,8 all In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35: @@ -44320,9 +44343,7 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=convert2blastmask -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: @@ -44353,11 +44374,23 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o stat_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f stat_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/stat_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f querydata_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=convert2blastmask -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/convert2blastmask.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -44385,35 +44418,26 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/pssmcreate_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/segmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/segmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/segmasker TMPL=segmasker -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f queryinfo_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/queryinfo_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/format TMPL=xblastformat -w -j16 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/segmasker TMPL=segmasker -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/segmasker/segmasker.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -44441,7 +44465,24 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f setupfactory_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/setupfactory_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/format TMPL=xblastformat -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o @@ -44450,9 +44491,9 @@ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o -/usr/In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml2_format.cpp:35: +/usr/In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/version.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blastfmtutil.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastfmtutil.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44475,17 +44516,17 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml2_format.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blastfmtutil.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastfmtutil.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/version.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blastfmtutil.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastfmtutil.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml2_format.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44506,9 +44547,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml_format.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xmlformat.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44530,32 +44578,31 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml_format.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xmlformat.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blastfmtutil.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastfmtutil.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml2_format.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/build_archive.cpp:37: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44578,24 +44625,18 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/build_archive.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_format.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/vecscreen_run.cpp:37: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_async_format.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44616,19 +44657,6 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/util/static_map.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_format.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/vecscreen_run.cpp:37: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/util/static_set.hpp:42, @@ -44636,9 +44664,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xmlformat.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/sam_formatter.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/sam.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44650,6 +44678,17 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_async_format.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -44665,9 +44704,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xmlformat.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/sam_formatter.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/sam.hpp:37, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44679,9 +44718,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/sam_formatter.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/sam.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/sam.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44708,9 +44747,9 @@ from /build/ncbi-blast+-2.8.1/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/format/sam_formatter.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/sam.hpp:37, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/sam.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44723,8 +44762,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_format.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44752,8 +44791,8 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_format.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44767,7 +44806,7 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_format.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44796,15 +44835,18 @@ from /build/ncbi-blast+-2.8.1/c++/include/objmgr/scope.hpp:45, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_format.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_async_format.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/build_archive.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -44827,20 +44869,19 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/blast_async_format.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/build_archive.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f rps_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rps_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' @@ -44851,24 +44892,29 @@ make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqinfosrc_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f rps_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rps_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/subj_ranges_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f seqsrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': -/build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ - ^ -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:42, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: -/build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - NCBI_DEPRECATED char* GetFilterString() const; - ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xmlformat.cpp:37: /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] @@ -44882,17 +44928,29 @@ NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/subj_ranges_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o version_reference_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f version_reference_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': +/build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ + ^ +In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xml2format.hpp:42, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/data4xml2format.cpp:36: +/build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + NCBI_DEPRECATED char* GetFilterString() const; + ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f setupfactory_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/setupfactory_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f search_strategy_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': @@ -44932,10 +44990,10 @@ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o version_reference_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f version_reference_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/version_reference_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f remote_blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' @@ -44945,34 +45003,6 @@ /bin/ln -f segmasker /build/ncbi-blast+-2.8.1/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f seqsrc_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/seqsrc_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': -/build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - if (m_ResultsMap.size() != currNum) - ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f search_strategy_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/search_strategy_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/traceback_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_format.cpp:49: /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/ncbi-blast+-2.8.1/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] @@ -45002,10 +45032,10 @@ if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f remote_blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/remote_blast_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f traceback_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' @@ -45015,6 +45045,10 @@ /bin/ln -f convert2blastmask /build/ncbi-blast+-2.8.1/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': +/build/ncbi-blast+-2.8.1/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + if (m_ResultsMap.size() != currNum) + ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o tracebacksearch_unit_test @@ -45046,185 +45080,174 @@ /bin/ln -f .xblastformat.dep /build/ncbi-blast+-2.8.1/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blastn -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j16 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=deltablast -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=rpsblast -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blastx -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blastp -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=psiblast -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blast_formatter -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blast_formatter -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blastp -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blastn -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=deltablast -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=psiblast -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=blastx -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45246,14 +45269,14 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45274,12 +45297,8 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45315,16 +45334,7 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45341,7 +45351,25 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:293:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/build ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blast_formatter.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:290:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -45355,29 +45383,16 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blast_formatter.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45398,14 +45413,21 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/blast/psiblast_app.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45426,13 +45448,19 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/psiblast_app.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/blast/rpsblast_app.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45453,13 +45481,9 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/rpsblast_app.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastp_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45480,7 +45504,18 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastp_app.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45508,6 +45543,12 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastx_app.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, @@ -45518,9 +45559,8 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/app/blast/psiblast_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45541,13 +45581,11 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:39: -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/psiblast_app.cpp:35: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:263:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45564,18 +45602,13 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastx_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastn_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastp_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45596,23 +45629,14 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastn_app.cpp:35: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:39: +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastp_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blast_formatter.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45633,13 +45657,15 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blast_formatter.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/blast/deltablast_app.cpp:36: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45660,14 +45686,18 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/deltablast_app.cpp:36: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:39: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/src/app/blast/deltablast_app.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45688,17 +45718,13 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/deltablast_app.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, + from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastn_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45719,21 +45745,14 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/include/objmgr/data_loader.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastn_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:71, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45754,19 +45773,9 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - ^ -/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45789,16 +45798,27 @@ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbidll.hpp:40, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/plugin_manager.hpp:72, + from /build/ncbi-blast+-2.8.1/c++/include/objmgr/object_manager.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + ^ +/build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastx_app.cpp:35: + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45819,14 +45839,36 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastx_app.cpp:35: +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbi_param.hpp:41, + from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbifile.hpp:48, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, + from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blast_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=rpsblast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, - from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: + from /build/ncbi-blast+-2.8.1/c++/src/app/blast/rpsblast_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ @@ -45847,30 +45889,29 @@ const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:324:86: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/test_boost.hpp:47, - from /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: +In file included from /build/ncbi-blast+-2.8.1/c++/src/app/blast/rpsblast_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blast_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_unit_test +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f redoalignment_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=rpstblastn -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=rpstblastn -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blast/rpstblastn_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -45898,42 +45939,24 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastp_app.cpp -o blastp_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastp -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastp /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastp -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o rpsblast -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f rpsblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rpsblast -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=seedtop -w -j16 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f delta_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/delta_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=tblastn -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=seedtop -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blast/seedtop_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -45961,19 +45984,25 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f redoalignment_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/redoalignment_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I../ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f bdbloader_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/bdbloader_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=tblastn -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blast/tblastn_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -46000,44 +46029,50 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -lm -lpthread -o magicblast_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f magicblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/magicblast_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o psiblast +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f psiblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin/psiblast +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=tblastx -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastp_app.cpp -o blastp_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastp +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastp /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastx_app.cpp -o blastx_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastx +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastx /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blast TMPL=tblastx -w -j16 --jobserver-auth=7,8 all make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I../ /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f bdbloader_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/bdbloader_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blast/tblastx_app.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -46065,8 +46100,34 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -lm -lpthread -o magicblast_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f magicblast_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/magicblast_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdb_convert -w -j15 --jobserver-auth=7,8 all +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdbcheck -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -46094,32 +46155,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f delta_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/delta_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdb_convert -w -j16 --jobserver-auth=7,8 all -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdbcheck -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdb_convert.cpp:35: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -46153,8 +46188,6 @@ /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -46182,16 +46215,36 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdbcmd -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o deltablast +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f deltablast /build/ncbi-blast+-2.8.1/c++/BUILD/bin/deltablast +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdbcmd -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdbcp -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdbcmd.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -46219,22 +46272,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_test -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blast_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_format_unit_test -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=blastdbcp -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdbcp.cpp:31: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -46263,24 +46300,30 @@ ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/blastx_app.cpp -o blastx_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastx -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastx /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastx +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blast_formatter +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blast_formatter /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=makeblastdb -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/version.hpp:38, +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=makeblastdb -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -In file included from /build/ncbi-blast+-2.8.1/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/makeblastdb.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -46362,24 +46405,22 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o psiblast -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f psiblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin/psiblast -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_test +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blast_format_unit_test /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_format_unit_test +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=makeprofiledb -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/app/blastdb TMPL=makeprofiledb -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:46, from /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/makeprofiledb.cpp:36: /build/ncbi-blast+-2.8.1/c++/include/corelib/version.hpp:250:83: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -46407,13 +46448,6 @@ CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); ^ /build/ncbi-blast+-2.8.1/c++/include/corelib/ncbiapp.hpp:147:77: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o deltablast -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f deltablast /build/ncbi-blast+-2.8.1/c++/BUILD/bin/deltablast -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include -I/build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-2.8.1/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test @@ -46422,10 +46456,10 @@ make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blast_formatter -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blast_formatter /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blast_formatter +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o rpsblast +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f rpsblast /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' @@ -46435,20 +46469,6 @@ /bin/ln -f rpstblastn /build/ncbi-blast+-2.8.1/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastdbcp -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastdbcp /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdbcp -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastdb_convert -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastdb_convert /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdb_convert -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o seedtop @@ -46457,13 +46477,20 @@ make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastdb_aliastool -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f blastdb_aliastool /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdb_aliastool +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastdbcp +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastdbcp /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o tblastn +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f tblastn /build/ncbi-blast+-2.8.1/c++/BUILD/bin/tblastn +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-2.8.1/c++/BUILD/bin @@ -46471,19 +46498,26 @@ make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastdb_convert +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastdb_convert /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdb_convert +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-2.8.1/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o -/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o tblastn -/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-2.8.1/c++/BUILD/bin -/bin/ln -f tblastn /build/ncbi-blast+-2.8.1/c++/BUILD/bin/tblastn -make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o +/usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o blastdb_aliastool +/bin/bash /build/ncbi-blast+-2.8.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-2.8.1/c++/BUILD/bin +/bin/ln -f blastdb_aliastool /build/ncbi-blast+-2.8.1/c++/BUILD/bin/blastdb_aliastool +make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.8.1/c++/BUILD/inc -I/build/ncbi-blast+-2.8.1/c++/include /build/ncbi-blast+-2.8.1/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/build/ncbi-blast+-2.8.1/c++/BUILD/lib -L/build/ncbi-blast+-2.8.1/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -lnsl -ldl -lm -lpthread -o makeprofiledb @@ -46532,95 +46566,95 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-2.8.1' dh_auto_test - cd c\+\+ && /usr/bin/make -j16 check VERBOSE=1 + cd c\+\+ && /usr/bin/make -j15 check VERBOSE=1 make[2]: Entering directory '/build/ncbi-blast+-2.8.1/c++' if test -s ""; then \ - cd /build/ncbi-blast+-2.8.1/c++/BUILD/build && /usr/bin/make -w -j16 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ + cd /build/ncbi-blast+-2.8.1/c++/BUILD/build && /usr/bin/make -w -j15 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ else \ - cd /build/ncbi-blast+-2.8.1/c++/BUILD/build && /usr/bin/make -w -j16 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ + cd /build/ncbi-blast+-2.8.1/c++/BUILD/build && /usr/bin/make -w -j15 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[3]: warning: -j16 forced in submake: resetting jobserver mode. +make[3]: warning: -j15 forced in submake: resetting jobserver mode. ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C corelib -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C corelib -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/corelib' -/usr/bin/make -C util -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C util -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C regexp -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C regexp -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/regexp TMPL=regexp -w -j16 --jobserver-auth=13,14 mark-as-disabled -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/regexp TMPL=regexp -w -j15 --jobserver-auth=13,14 mark-as-disabled +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/regexp' -/usr/bin/make -C xregexp -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C xregexp -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/xregexp' -/usr/bin/make -C compress -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C compress -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C bzip2 -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C bzip2 -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j16 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j15 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -C zlib -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C zlib -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/compress/zlib TMPL=zlib -w -j16 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/util/compress/zlib TMPL=zlib -w -j15 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -C api -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/compress' @@ -46628,25 +46662,25 @@ Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" -/usr/bin/make -C tables -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tables -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/tables' -/usr/bin/make -C creaders -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C creaders -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/creaders' -/usr/bin/make -C sequtil -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C sequtil -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/sequtil' -/usr/bin/make -C bitset -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C bitset -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' @@ -46654,31 +46688,31 @@ make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" -/usr/bin/make -C lmdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: *** No rule to make target '/build/ncbi-blast+-2.8.1/c++/BUILD/status/LocalLMDB.enabled', needed by 'requirements'. Stop. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdb' -/usr/bin/make -C lmdbxx -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdbxx -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdbxx' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdbxx' SKIP -- util/lmdbxx/lmdbxx_sample make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util/lmdbxx' @@ -46687,12 +46721,12 @@ /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/util' -/usr/bin/make -C connect -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C connect -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C services -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C services -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect/services' @@ -46703,67 +46737,67 @@ /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/connect' -/usr/bin/make -C cgi -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C cgi -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/cgi' -/usr/bin/make -C html -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C html -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/html' -/usr/bin/make -C build-system -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C build-system -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C helpers -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C helpers -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/helpers' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/helpers' -/usr/bin/make -C project_tree_builder -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C project_tree_builder -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder -/usr/bin/make -C msbuild -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C msbuild -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' -/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j16 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/ncbi-blast+-2.8.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.8.1/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j15 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/build-system' -/usr/bin/make -C serial -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C serial -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C datatool -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C datatool -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial/datatool' @@ -46772,12 +46806,12 @@ /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/serial' -/usr/bin/make -C db -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C db -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C sqlite -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C sqlite -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/db' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/db/sqlite' /bin/echo 'Warning: non-existent sub-project "bdb"' @@ -46785,346 +46819,346 @@ make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/db' /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" -/usr/bin/make -C objects -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objects -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C general -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C general -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/general' -/usr/bin/make -C biblio -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biblio -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biblio' -/usr/bin/make -C medline -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medline -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medline' -/usr/bin/make -C pub -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pub -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pub' -/usr/bin/make -C seqcode -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqcode -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqcode' -/usr/bin/make -C seq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seq' -/usr/bin/make -C seqset -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqset -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqset' -/usr/bin/make -C submit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C submit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/submit' -/usr/bin/make -C seqedit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqedit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqedit' -/usr/bin/make -C seqsplit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqsplit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -C id1 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id1' -/usr/bin/make -C id2 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/id2' -/usr/bin/make -C entrez2 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrez2 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrez2' -/usr/bin/make -C pubmed -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pubmed -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pubmed' -/usr/bin/make -C medlars -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medlars -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/medlars' -/usr/bin/make -C mla -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mla -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mla' -/usr/bin/make -C proj -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C proj -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/proj' -/usr/bin/make -C scoremat -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C scoremat -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/scoremat' -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blast' -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastdb' -/usr/bin/make -C blastxml -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml' -/usr/bin/make -C blastxml2 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml2 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -C mmdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mmdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mmdb' -/usr/bin/make -C cn3d -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cn3d -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/cn3d' -/usr/bin/make -C cdd -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cdd -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/cdd' -/usr/bin/make -C ncbimime -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C ncbimime -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/ncbimime' -/usr/bin/make -C pcsubstance -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcsubstance -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pcsubstance' -/usr/bin/make -C pcassay -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcassay -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/pcassay' -/usr/bin/make -C gbseq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbseq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbseq' -/usr/bin/make -C insdseq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C insdseq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/insdseq' -/usr/bin/make -C tinyseq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tinyseq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/tinyseq' -/usr/bin/make -C biotree -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biotree -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/biotree' -/usr/bin/make -C entrezgene -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrezgene -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/entrezgene' -/usr/bin/make -C omssa -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C omssa -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/omssa' -/usr/bin/make -C remap -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C remap -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/remap' -/usr/bin/make -C seqtest -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqtest -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/seqtest' -/usr/bin/make -C taxon1 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon1 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon1' -/usr/bin/make -C taxon3 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon3 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/taxon3' -/usr/bin/make -C gbproj -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbproj -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/gbproj' -/usr/bin/make -C trackmgr -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C trackmgr -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/trackmgr' -/usr/bin/make -C valerr -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valerr -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valerr' -/usr/bin/make -C valid -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valid -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/valid' -/usr/bin/make -C access -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C access -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/access' -/usr/bin/make -C docsum -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C docsum -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/docsum' -/usr/bin/make -C featdef -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C featdef -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/featdef' -/usr/bin/make -C genomecoll -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genomecoll -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C gc_cli -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C gc_cli -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll/gc_cli' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll/gc_cli' TEST -- objects/genomecoll/gc_cli/gc_cli make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll/gc_cli' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -C homologene -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C homologene -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/homologene' -/usr/bin/make -C mim -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mim -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/mim' -/usr/bin/make -C objprt -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C objprt -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/objprt' -/usr/bin/make -C variation -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation' -/usr/bin/make -C macro -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C macro -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/macro' -/usr/bin/make -C genesbyloc -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genesbyloc -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/genesbyloc' -/usr/bin/make -C coords -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C coords -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/coords' -/usr/bin/make -C varrep -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C varrep -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/varrep' -/usr/bin/make -C variation_libs -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation_libs -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C dbsnp -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C dbsnp -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation_libs' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C search_by_rsid -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C search_by_rsid -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation_libs/dbsnp/search_by_rsid' -/usr/bin/make -C tooltip_service -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C tooltip_service -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation_libs/dbsnp/tooltip_service' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation_libs/dbsnp' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects/variation_libs' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objects' -/usr/bin/make -C objmgr -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objmgr -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" -/usr/bin/make -C util -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C util -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/util' -/usr/bin/make -C split -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C split -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objmgr' -/usr/bin/make -C objtools -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objtools -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C logging -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C logging -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/logging' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" -/usr/bin/make -C readers -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C readers -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' @@ -47132,87 +47166,87 @@ /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/readers' -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C seqdb_reader -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C seqdb_reader -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -C test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make -C seqdb_writer -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C seqdb_writer -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make -C gene_info_reader -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C gene_info_reader -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" -/usr/bin/make -C services -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C services -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -C blastdb_format -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb_format -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' @@ -47220,34 +47254,34 @@ make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C data_loaders -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C data_loaders -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C genbank -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C genbank -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C cache -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C cache -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" -/usr/bin/make -C id2 -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make -C id1 -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" -/usr/bin/make -C gicache -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C gicache -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' @@ -47255,9 +47289,9 @@ make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders/blastdb' @@ -47268,14 +47302,14 @@ /bin/echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/data_loaders' -/usr/bin/make -C simple -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C simple -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/simple' -/usr/bin/make -C alnmgr -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C alnmgr -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' @@ -47287,23 +47321,23 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" -/usr/bin/make -C edit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C edit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "protein_match"' Warning: non-existent sub-project "protein_match" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/edit' -/usr/bin/make -C cleanup -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cleanup -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -C format -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C format -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/format' /bin/echo 'Warning: non-existent sub-project "validator"' @@ -47312,22 +47346,22 @@ Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" -/usr/bin/make -C seqmasks_io -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqmasks_io -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" -/usr/bin/make -C align_format -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C align_format -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/objtools/align_format/unit_test' @@ -47347,78 +47381,78 @@ Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" -/usr/bin/make -C algo -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C algo -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C dustmask -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C dustmask -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/dustmask' -/usr/bin/make -C winmask -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmask -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C composition_adjustment -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C composition_adjustment -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/make -C core -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C core -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/core' -/usr/bin/make -C dbindex -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C dbindex -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C makeindex -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C makeindex -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" -/usr/bin/make -C api -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/api' -/usr/bin/make -C proteinkmer -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C proteinkmer -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' TEST -- algo/blast/proteinkmer/unit_test/proteinkmer_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -C format -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C format -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/format' -/usr/bin/make -C blastinput -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastinput -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput/unit_test' @@ -47427,249 +47461,249 @@ make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/blastinput' /bin/echo 'Warning: non-existent sub-project "blast_sra_input"' Warning: non-existent sub-project "blast_sra_input" -/usr/bin/make -C igblast -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C igblast -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" -/usr/bin/make -C unit_tests -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C unit_tests -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C blast_format -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C blast_format -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/make -C seqdb_reader -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C seqdb_reader -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -C api -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C api -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aalookup_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqsrc_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/delta_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntlookup_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/setupfactory_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/search_strategy_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/redoalignment_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/queryinfo_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/querydata_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastsetup_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastextend_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastdiag_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/optionshandle_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/traceback_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/phiblast_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/split_query_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/scoreblk_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspstream_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rps_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gapinfo_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blasthits_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/linkhsp_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastengine_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/version_reference_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntscan_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aascan_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/remote_blast_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/uniform_search_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastfilter_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastoptions_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/bl2seq_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/stat_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/magicblast_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_blasthits_unit_test make[9]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_traceback_unit_test make[8]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast' -/usr/bin/make -C segmask -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmask -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' @@ -47697,21 +47731,21 @@ /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/algo' -/usr/bin/make -C misc -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C misc -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C third_party -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C third_party -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/misc' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/misc/third_party' -/usr/bin/make -C third_party_static -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C third_party_static -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/misc' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/misc/third_party_static' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'mark-as-disabled_r'. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/misc/third_party_static' make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/misc/third_party_static' @@ -47750,9 +47784,9 @@ make[5]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" -/usr/bin/make -C app -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C app -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' @@ -47765,51 +47799,51 @@ Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/blastn make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/blastx make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastn make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastx make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/psiblast make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/rpsblast make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/rpstblastn make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/blast_formatter make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/deltablast make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blast' @@ -47829,63 +47863,63 @@ Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" -/usr/bin/make -C winmasker -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmasker -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/winmasker' -/usr/bin/make -C dustmasker -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C dustmasker -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/dustmasker' -/usr/bin/make -C segmasker -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmasker -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/segmasker' -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeblastdb make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_aliastool make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcheck make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/convert2blastmask make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcp make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeprofiledb make[7]: Entering directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_convert make[6]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build/app/blastdb' @@ -48044,27 +48078,27 @@ Testing, please wait... -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: ncbi_applog: not found -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: uptime: not found -OK -- [serial/datatool] datatool.sh (real 0.60, user 0.41, sys 0.23) -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: ncbi_applog: not found -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: uptime: not found +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 443: ncbi_applog: command not found +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 471: uptime: command not found +OK -- [serial/datatool] datatool.sh (real 1.39, user 0.45, sys 0.26) +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 443: ncbi_applog: command not found +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 471: uptime: command not found SKP -- [serial/datatool] datatool_xml.sh ABS -- [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM ABS -- [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM_BY_SEQ ABS -- [objects/genomecoll/gc_cli] test_gencoll_svc_TYPELOC -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: ncbi_applog: not found -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: uptime: not found -OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.05, user 0.03, sys 0.02) -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: ncbi_applog: not found -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: uptime: not found -ERR [201] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 19.11, user 7.89, sys 2.98) -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: ncbi_applog: not found -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: uptime: not found -OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.04, user 0.03, sys 0.02) -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: ncbi_applog: not found -/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: uptime: not found -ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.14, user 0.11, sys 0.05) +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 443: ncbi_applog: command not found +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 471: uptime: command not found +OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.30, user 0.04, sys 0.01) +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 443: ncbi_applog: command not found +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 471: uptime: command not found +ERR [201] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 20.53, user 8.25, sys 2.19) +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 443: ncbi_applog: command not found +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 471: uptime: command not found +OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.04, user 0.03, sys 0.01) +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 443: ncbi_applog: command not found +/build/ncbi-blast+-2.8.1/c++/BUILD/build/check.sh: line 471: uptime: command not found +ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.16, user 0.14, sys 0.05) Succeeded : 3 Timeout : 0 @@ -48075,129 +48109,129 @@ make[3]: Leaving directory '/build/ncbi-blast+-2.8.1/c++/BUILD/build' make[2]: *** [Makefile:33: check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-2.8.1/c++' -dh_auto_test: cd c\+\+ && /usr/bin/make -j16 check VERBOSE=1 returned exit code 2 +dh_auto_test: cd c\+\+ && /usr/bin/make -j15 check VERBOSE=1 returned exit code 2 make[1]: [debian/rules:65: override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err -ERR [201] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 19.11, user 7.89, sys 2.98) -ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.14, user 0.11, sys 0.05) +ERR [201] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 20.53, user 8.25, sys 2.19) +ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.16, user 0.14, sys 0.05) ====================================================================== proteinkmer_unit_test ====================================================================== -43673/000/0000/PB 113AAA9931E8F511 0001/0001 2022-09-11T13:45:53.388231 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test start /build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test -43673/000/0000/PB 113AAA9931E8F511 0002/0002 2022-09-11T13:45:53.388786 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/ncbi-blast%2B-2.8.1/c%2B%2B/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test&ncbi_app_build_date=Feb+24+2020+01:11:40&ncbi_app_package_name=blast&ncbi_app_package_version=2.8.1&ncbi_app_package_date=Feb+24+2020+01:11:40&ncbi_app_version=0.0.0 +24085/000/0000/PB AF285E151118C511 0001/0001 2021-08-10T10:13:05.152858 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test start /build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test +24085/000/0000/PB AF285E151118C511 0002/0002 2021-08-10T10:13:05.153471 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test extra ncbi_app_username=pbuilder2&ncbi_app_path=/build/ncbi-blast%2B-2.8.1/c%2B%2B/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test&ncbi_app_build_date=Feb+24+2020+01:11:40&ncbi_app_package_name=blast&ncbi_app_package_version=2.8.1&ncbi_app_package_date=Feb+24+2020+01:11:40&ncbi_app_version=0.0.0 Running 31 test cases... -43673/000/0001/RB 113AAA9931E8F511 0003/0003 2022-09-11T13:45:53.391809 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=KmerResults&ncbi_app_version=0.0.0 -43673/000/0001/R 113AAA9931E8F511 0004/0004 2022-09-11T13:45:53.394071 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test extra ncbi_phid=113AAA9931E8F5110000000000010001 -43673/000/0001/R 113AAA9931E8F511 0005/0005 2022-09-11T13:45:53.394093 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test extra issued_subhit=1 -43673/000/0001/R 113AAA9931E8F511 0006/0006 2022-09-11T13:45:53.394914 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -43673/000/0001/R 113AAA9931E8F511 0007/0007 2022-09-11T13:45:53.394945 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -43673/000/0001/R 113AAA9931E8F511 0008/0008 2022-09-11T13:45:53.394971 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -43673/000/0001/R 113AAA9931E8F511 0009/0009 2022-09-11T13:45:53.394990 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -43673/000/0001/R 113AAA9931E8F511 0011/0011 2022-09-11T13:45:53.395644 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test extra issued_subhit=2 -43673/000/0001/R 113AAA9931E8F511 0012/0012 2022-09-11T13:45:53.395763 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -43673/000/0001/R 113AAA9931E8F511 0013/0013 2022-09-11T13:45:53.395781 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -43673/000/0001/R 113AAA9931E8F511 0014/0014 2022-09-11T13:45:53.395801 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -43673/000/0001/R 113AAA9931E8F511 0015/0015 2022-09-11T13:45:53.395817 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -43673/000/0001/R 113AAA9931E8F511 0017/0017 2022-09-11T13:45:54.397510 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test extra issued_subhit=3 -43673/000/0001/R 113AAA9931E8F511 0018/0018 2022-09-11T13:45:54.397830 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -43673/000/0001/R 113AAA9931E8F511 0019/0019 2022-09-11T13:45:54.397887 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -43673/000/0001/R 113AAA9931E8F511 0020/0020 2022-09-11T13:45:54.397940 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -43673/000/0001/R 113AAA9931E8F511 0021/0021 2022-09-11T13:45:54.397980 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -43673/000/0001/R 113AAA9931E8F511 0023/0023 2022-09-11T13:45:56.899176 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test extra issued_subhit=4 -43673/000/0001/R 113AAA9931E8F511 0024/0024 2022-09-11T13:45:56.899348 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -43673/000/0001/R 113AAA9931E8F511 0025/0025 2022-09-11T13:45:56.899374 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -43673/000/0001/R 113AAA9931E8F511 0026/0026 2022-09-11T13:45:56.899402 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -43673/000/0001/R 113AAA9931E8F511 0027/0027 2022-09-11T13:45:56.899421 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -43673/000/0001/R 113AAA9931E8F511 0029/0029 2022-09-11T13:46:01.650729 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test extra issued_subhit=5 -43673/000/0001/R 113AAA9931E8F511 0030/0030 2022-09-11T13:46:01.650958 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -43673/000/0001/R 113AAA9931E8F511 0031/0031 2022-09-11T13:46:01.650992 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -43673/000/0001/R 113AAA9931E8F511 0032/0032 2022-09-11T13:46:01.651025 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -43673/000/0001/R 113AAA9931E8F511 0033/0033 2022-09-11T13:46:01.651052 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -43673/000/0001/R 113AAA9931E8F511 0035/0035 2022-09-11T13:46:01.651524 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -43673/000/0001/R 113AAA9931E8F511 0036/0036 2022-09-11T13:46:01.651547 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test Error: UNIT_TEST "proteinkmer_unit_test.cpp", line 84: proteinkmers::KmerResults_invoker() --- Uncaught exception in "KmerResults"(CLoaderException::eNoConnection) cannot open initial connection -43673/000/0001/RE 113AAA9931E8F511 0039/0039 2022-09-11T13:46:01.651645 ionos5-amd64 UNK_CLIENT 113AAA9931E8F511_0001SID proteinkmer_unit_test request-stop 500 8.259829044 0 0 +24085/000/0001/RB AF285E151118C511 0003/0003 2021-08-10T10:13:05.157515 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=KmerResults&ncbi_app_version=0.0.0 +24085/000/0001/R AF285E151118C511 0004/0004 2021-08-10T10:13:05.189955 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test extra ncbi_phid=AF285E151118C5110000000000010001 +24085/000/0001/R AF285E151118C511 0005/0005 2021-08-10T10:13:05.189997 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test extra issued_subhit=1 +24085/000/0001/R AF285E151118C511 0006/0006 2021-08-10T10:13:05.203811 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +24085/000/0001/R AF285E151118C511 0007/0007 2021-08-10T10:13:05.204649 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +24085/000/0001/R AF285E151118C511 0008/0008 2021-08-10T10:13:05.204704 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +24085/000/0001/R AF285E151118C511 0009/0009 2021-08-10T10:13:05.205596 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +24085/000/0001/R AF285E151118C511 0011/0011 2021-08-10T10:13:05.207045 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test extra issued_subhit=2 +24085/000/0001/R AF285E151118C511 0012/0012 2021-08-10T10:13:05.207211 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +24085/000/0001/R AF285E151118C511 0013/0013 2021-08-10T10:13:05.207240 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +24085/000/0001/R AF285E151118C511 0014/0014 2021-08-10T10:13:05.207271 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +24085/000/0001/R AF285E151118C511 0015/0015 2021-08-10T10:13:05.207295 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +24085/000/0001/R AF285E151118C511 0017/0017 2021-08-10T10:13:06.208489 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test extra issued_subhit=3 +24085/000/0001/R AF285E151118C511 0018/0018 2021-08-10T10:13:06.208711 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +24085/000/0001/R AF285E151118C511 0019/0019 2021-08-10T10:13:06.208751 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +24085/000/0001/R AF285E151118C511 0020/0020 2021-08-10T10:13:06.208779 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +24085/000/0001/R AF285E151118C511 0021/0021 2021-08-10T10:13:06.208801 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +24085/000/0001/R AF285E151118C511 0023/0023 2021-08-10T10:13:08.709940 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test extra issued_subhit=4 +24085/000/0001/R AF285E151118C511 0024/0024 2021-08-10T10:13:08.710119 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +24085/000/0001/R AF285E151118C511 0025/0025 2021-08-10T10:13:08.710148 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +24085/000/0001/R AF285E151118C511 0026/0026 2021-08-10T10:13:08.710176 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +24085/000/0001/R AF285E151118C511 0027/0027 2021-08-10T10:13:08.710197 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +24085/000/0001/R AF285E151118C511 0029/0029 2021-08-10T10:13:13.489953 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test extra issued_subhit=5 +24085/000/0001/R AF285E151118C511 0030/0030 2021-08-10T10:13:13.490154 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +24085/000/0001/R AF285E151118C511 0031/0031 2021-08-10T10:13:13.490190 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +24085/000/0001/R AF285E151118C511 0032/0032 2021-08-10T10:13:13.490229 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +24085/000/0001/R AF285E151118C511 0033/0033 2021-08-10T10:13:13.490255 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +24085/000/0001/R AF285E151118C511 0035/0035 2021-08-10T10:13:13.499688 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 +24085/000/0001/R AF285E151118C511 0036/0036 2021-08-10T10:13:13.499751 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test Error: UNIT_TEST "proteinkmer_unit_test.cpp", line 84: proteinkmers::KmerResults_invoker() --- Uncaught exception in "KmerResults"(CLoaderException::eNoConnection) cannot open initial connection +24085/000/0001/RE AF285E151118C511 0039/0039 2021-08-10T10:13:13.507394 i-capture-the-hostname UNK_CLIENT AF285E151118C511_0001SID proteinkmer_unit_test request-stop 500 8.349858045 0 0 unknown location(0): fatal error: in "proteinkmers/KmerResults": NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "./c++/src/objtools/data_loaders/genbank/reader.cpp", line 187: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection  ./c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp(84): last checkpoint: "KmerResults" entry. -43673/000/0002/RB 113AAA9931E8F511 0040/0040 2022-09-11T13:46:01.652500 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=KmerResultsSet&ncbi_app_version=0.0.0 -43673/000/0002/RE 113AAA9931E8F511 0041/0041 2022-09-11T13:46:01.653362 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000862121 0 0 -43673/000/0003/RB 113AAA9931E8F511 0042/0042 2022-09-11T13:46:01.653915 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=KmerResultsSetPushBack&ncbi_app_version=0.0.0 -43673/000/0003/RE 113AAA9931E8F511 0043/0043 2022-09-11T13:46:01.654373 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000455856 0 0 -43673/000/0004/RB 113AAA9931E8F511 0044/0044 2022-09-11T13:46:01.654919 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithBadQuery&ncbi_app_version=0.0.0 -43673/000/0004/RE 113AAA9931E8F511 0045/0045 2022-09-11T13:46:01.656395 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.001471042 0 0 -43673/000/0005/RB 113AAA9931E8F511 0046/0046 2022-09-11T13:46:01.656983 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithAllXQuery&ncbi_app_version=0.0.0 -43673/000/0005/RE 113AAA9931E8F511 0047/0047 2022-09-11T13:46:01.658297 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.001309871 0 0 -43673/000/0006/RB 113AAA9931E8F511 0048/0048 2022-09-11T13:46:01.658845 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithBadDatabase&ncbi_app_version=0.0.0 -43673/000/0006/RE 113AAA9931E8F511 0049/0049 2022-09-11T13:46:01.659412 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000560998 0 0 -43673/000/0007/RB 113AAA9931E8F511 0050/0050 2022-09-11T13:46:01.660021 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithSSeqLocQuery&ncbi_app_version=0.0.0 -43673/000/0007/RE 113AAA9931E8F511 0051/0051 2022-09-11T13:46:01.679357 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.019300937 0 0 -43673/000/0008/RB 113AAA9931E8F511 0052/0052 2022-09-11T13:46:01.680032 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=NcbieaaSearch&ncbi_app_version=0.0.0 -43673/000/0008/RE 113AAA9931E8F511 0053/0053 2022-09-11T13:46:01.694696 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.014623880 0 0 -43673/000/0009/RB 113AAA9931E8F511 0054/0054 2022-09-11T13:46:01.695394 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=MultipleQuerySearch&ncbi_app_version=0.0.0 -43673/000/0009/RE 113AAA9931E8F511 0055/0055 2022-09-11T13:46:01.735752 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.040320158 0 0 -43673/000/0010/RB 113AAA9931E8F511 0056/0056 2022-09-11T13:46:01.736558 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=IupacaaSearch&ncbi_app_version=0.0.0 -43673/000/0010/RE 113AAA9931E8F511 0057/0057 2022-09-11T13:46:01.751629 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.015038013 0 0 -43673/000/0011/RB 113AAA9931E8F511 0058/0058 2022-09-11T13:46:01.752326 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=GIListLimitSearch&ncbi_app_version=0.0.0 -43673/000/0011/RE 113AAA9931E8F511 0059/0059 2022-09-11T13:46:01.767159 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.014798879 0 0 -43673/000/0012/RB 113AAA9931E8F511 0060/0060 2022-09-11T13:46:01.767846 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=NegativeGIListLimitSearch&ncbi_app_version=0.0.0 -43673/000/0012/RE 113AAA9931E8F511 0061/0061 2022-09-11T13:46:01.783009 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.015127897 0 0 -43673/000/0013/RB 113AAA9931E8F511 0062/0062 2022-09-11T13:46:01.783708 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=GIListLimitSearch_NoMatches&ncbi_app_version=0.0.0 -43673/000/0013/RE 113AAA9931E8F511 0063/0063 2022-09-11T13:46:01.798393 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.014646053 0 0 -43673/000/0014/RB 113AAA9931E8F511 0064/0064 2022-09-11T13:46:01.799150 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=NoMatches&ncbi_app_version=0.0.0 -43673/000/0014/RE 113AAA9931E8F511 0065/0065 2022-09-11T13:46:01.799790 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000639200 0 0 -43673/000/0015/RB 113AAA9931E8F511 0066/0066 2022-09-11T13:46:01.800220 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckQueryHashes&ncbi_app_version=0.0.0 -43673/000/0015/RE 113AAA9931E8F511 0067/0067 2022-09-11T13:46:01.800549 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000329017 0 0 -43673/000/0016/RB 113AAA9931E8F511 0068/0068 2022-09-11T13:46:01.800978 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckQueryHashesVersion3&ncbi_app_version=0.0.0 -43673/000/0016/RE 113AAA9931E8F511 0069/0069 2022-09-11T13:46:01.801108 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000129938 0 0 -43673/000/0017/RB 113AAA9931E8F511 0070/0070 2022-09-11T13:46:01.801517 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndex&ncbi_app_version=0.0.0 -43673/000/0017/RE 113AAA9931E8F511 0071/0071 2022-09-11T13:46:03.268335 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.466769933 0 0 -43673/000/0018/RB 113AAA9931E8F511 0072/0072 2022-09-11T13:46:03.269144 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexRepeats&ncbi_app_version=0.0.0 -43673/000/0018/RE 113AAA9931E8F511 0073/0073 2022-09-11T13:46:04.757556 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.488366842 0 0 -43673/000/0019/RB 113AAA9931E8F511 0074/0074 2022-09-11T13:46:04.758282 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexNotValidSequence&ncbi_app_version=0.0.0 -43673/000/0019/RE 113AAA9931E8F511 0075/0075 2022-09-11T13:46:06.130212 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.371888160 0 0 -43673/000/0020/RB 113AAA9931E8F511 0076/0076 2022-09-11T13:46:06.130974 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexWidth4Kmer4&ncbi_app_version=0.0.0 -43673/000/0020/RE 113AAA9931E8F511 0077/0077 2022-09-11T13:46:07.639085 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.508061170 0 0 -43673/000/0021/RB 113AAA9931E8F511 0078/0078 2022-09-11T13:46:07.639889 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexFewerBands&ncbi_app_version=0.0.0 -43673/000/0021/RE 113AAA9931E8F511 0079/0079 2022-09-11T13:46:09.136352 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.496412038 0 0 -43673/000/0022/RB 113AAA9931E8F511 0080/0080 2022-09-11T13:46:09.137154 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndex10letterAlphabet&ncbi_app_version=0.0.0 -43673/000/0022/RE 113AAA9931E8F511 0081/0081 2022-09-11T13:46:10.676743 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.539518117 0 0 -43673/000/0023/RB 113AAA9931E8F511 0082/0082 2022-09-11T13:46:10.677477 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndex10letterVersion3&ncbi_app_version=0.0.0 -43673/000/0023/RE 113AAA9931E8F511 0083/0083 2022-09-11T13:46:12.171680 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.494158029 0 0 -43673/000/0024/RB 113AAA9931E8F511 0084/0084 2022-09-11T13:46:12.172418 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckVerify_nr_test&ncbi_app_version=0.0.0 -43673/000/0024/RE 113AAA9931E8F511 0085/0085 2022-09-11T13:46:12.173249 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000829935 0 0 -43673/000/0025/RB 113AAA9931E8F511 0086/0086 2022-09-11T13:46:12.173690 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckEmptyIndexName&ncbi_app_version=0.0.0 -43673/000/0025/RE 113AAA9931E8F511 0087/0087 2022-09-11T13:46:12.173759 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000067949 0 0 -43673/000/0026/RB 113AAA9931E8F511 0088/0088 2022-09-11T13:46:12.174176 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckNoIndex&ncbi_app_version=0.0.0 -43673/000/0026/RE 113AAA9931E8F511 0089/0089 2022-09-11T13:46:12.174901 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000720977 0 0 -43673/000/0027/RB 113AAA9931E8F511 0090/0090 2022-09-11T13:46:12.175322 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckOptionValidation&ncbi_app_version=0.0.0 -43673/000/0027/RE 113AAA9931E8F511 0091/0091 2022-09-11T13:46:12.175358 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000038146 0 0 -43673/000/0028/RB 113AAA9931E8F511 0092/0092 2022-09-11T13:46:12.175770 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BadOptionsThrow&ncbi_app_version=0.0.0 -43673/000/0028/RE 113AAA9931E8F511 0093/0093 2022-09-11T13:46:12.176142 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000368833 0 0 -43673/000/0029/RB 113AAA9931E8F511 0094/0094 2022-09-11T13:46:12.176570 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BlastKmerSearch&ncbi_app_version=0.0.0 -43673/000/0029/RE 113AAA9931E8F511 0095/0095 2022-09-11T13:46:12.199586 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.022983074 0 0 -43673/000/0030/RB 113AAA9931E8F511 0096/0096 2022-09-11T13:46:12.200293 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BlastKmerMultipleQuerySearch&ncbi_app_version=0.0.0 +24085/000/0002/RB AF285E151118C511 0040/0040 2021-08-10T10:13:13.516378 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=KmerResultsSet&ncbi_app_version=0.0.0 +24085/000/0002/RE AF285E151118C511 0041/0041 2021-08-10T10:13:13.517183 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000833988 0 0 +24085/000/0003/RB AF285E151118C511 0042/0042 2021-08-10T10:13:13.517705 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=KmerResultsSetPushBack&ncbi_app_version=0.0.0 +24085/000/0003/RE AF285E151118C511 0043/0043 2021-08-10T10:13:13.518329 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000621080 0 0 +24085/000/0004/RB AF285E151118C511 0044/0044 2021-08-10T10:13:13.518892 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithBadQuery&ncbi_app_version=0.0.0 +24085/000/0004/RE AF285E151118C511 0045/0045 2021-08-10T10:13:13.758789 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.239872932 0 0 +24085/000/0005/RB AF285E151118C511 0046/0046 2021-08-10T10:13:13.759467 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithAllXQuery&ncbi_app_version=0.0.0 +24085/000/0005/RE AF285E151118C511 0047/0047 2021-08-10T10:13:13.766565 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.007078170 0 0 +24085/000/0006/RB AF285E151118C511 0048/0048 2021-08-10T10:13:13.767219 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithBadDatabase&ncbi_app_version=0.0.0 +24085/000/0006/RE AF285E151118C511 0049/0049 2021-08-10T10:13:13.767795 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000571966 0 0 +24085/000/0007/RB AF285E151118C511 0050/0050 2021-08-10T10:13:13.768311 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=SearchWithSSeqLocQuery&ncbi_app_version=0.0.0 +24085/000/0007/RE AF285E151118C511 0051/0051 2021-08-10T10:13:13.781009 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.012671947 0 0 +24085/000/0008/RB AF285E151118C511 0052/0052 2021-08-10T10:13:13.781715 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=NcbieaaSearch&ncbi_app_version=0.0.0 +24085/000/0008/RE AF285E151118C511 0053/0053 2021-08-10T10:13:13.793160 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.011418104 0 0 +24085/000/0009/RB AF285E151118C511 0054/0054 2021-08-10T10:13:13.793831 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=MultipleQuerySearch&ncbi_app_version=0.0.0 +24085/000/0009/RE AF285E151118C511 0055/0055 2021-08-10T10:13:13.823054 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.029194831 0 0 +24085/000/0010/RB AF285E151118C511 0056/0056 2021-08-10T10:13:13.823729 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=IupacaaSearch&ncbi_app_version=0.0.0 +24085/000/0010/RE AF285E151118C511 0057/0057 2021-08-10T10:13:13.835484 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.011725902 0 0 +24085/000/0011/RB AF285E151118C511 0058/0058 2021-08-10T10:13:13.836127 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=GIListLimitSearch&ncbi_app_version=0.0.0 +24085/000/0011/RE AF285E151118C511 0059/0059 2021-08-10T10:13:13.848407 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.012253999 0 0 +24085/000/0012/RB AF285E151118C511 0060/0060 2021-08-10T10:13:13.849263 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=NegativeGIListLimitSearch&ncbi_app_version=0.0.0 +24085/000/0012/RE AF285E151118C511 0061/0061 2021-08-10T10:13:13.861380 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.012097120 0 0 +24085/000/0013/RB AF285E151118C511 0062/0062 2021-08-10T10:13:13.862070 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=GIListLimitSearch_NoMatches&ncbi_app_version=0.0.0 +24085/000/0013/RE AF285E151118C511 0063/0063 2021-08-10T10:13:13.873526 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.011426925 0 0 +24085/000/0014/RB AF285E151118C511 0064/0064 2021-08-10T10:13:13.874269 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=NoMatches&ncbi_app_version=0.0.0 +24085/000/0014/RE AF285E151118C511 0065/0065 2021-08-10T10:13:13.875033 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000763893 0 0 +24085/000/0015/RB AF285E151118C511 0066/0066 2021-08-10T10:13:13.875494 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckQueryHashes&ncbi_app_version=0.0.0 +24085/000/0015/RE AF285E151118C511 0067/0067 2021-08-10T10:13:13.954037 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.078511953 0 0 +24085/000/0016/RB AF285E151118C511 0068/0068 2021-08-10T10:13:13.954751 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckQueryHashesVersion3&ncbi_app_version=0.0.0 +24085/000/0016/RE AF285E151118C511 0069/0069 2021-08-10T10:13:13.954925 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000175952 0 0 +24085/000/0017/RB AF285E151118C511 0070/0070 2021-08-10T10:13:13.955355 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndex&ncbi_app_version=0.0.0 +24085/000/0017/RE AF285E151118C511 0071/0071 2021-08-10T10:13:15.347709 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.392313003 0 0 +24085/000/0018/RB AF285E151118C511 0072/0072 2021-08-10T10:13:15.348505 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexRepeats&ncbi_app_version=0.0.0 +24085/000/0018/RE AF285E151118C511 0073/0073 2021-08-10T10:13:16.842704 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.494168043 0 0 +24085/000/0019/RB AF285E151118C511 0074/0074 2021-08-10T10:13:16.843433 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexNotValidSequence&ncbi_app_version=0.0.0 +24085/000/0019/RE AF285E151118C511 0075/0075 2021-08-10T10:13:18.270746 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.427284955 0 0 +24085/000/0020/RB AF285E151118C511 0076/0076 2021-08-10T10:13:18.271490 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexWidth4Kmer4&ncbi_app_version=0.0.0 +24085/000/0020/RE AF285E151118C511 0077/0077 2021-08-10T10:13:19.785381 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.513853073 0 0 +24085/000/0021/RB AF285E151118C511 0078/0078 2021-08-10T10:13:19.786099 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndexFewerBands&ncbi_app_version=0.0.0 +24085/000/0021/RE AF285E151118C511 0079/0079 2021-08-10T10:13:21.120228 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.334093093 0 0 +24085/000/0022/RB AF285E151118C511 0080/0080 2021-08-10T10:13:21.120940 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndex10letterAlphabet&ncbi_app_version=0.0.0 +24085/000/0022/RE AF285E151118C511 0081/0081 2021-08-10T10:13:22.519513 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.398538112 0 0 +24085/000/0023/RB AF285E151118C511 0082/0082 2021-08-10T10:13:22.520362 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BuildIndex10letterVersion3&ncbi_app_version=0.0.0 +24085/000/0023/RE AF285E151118C511 0083/0083 2021-08-10T10:13:23.873550 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 1.353164911 0 0 +24085/000/0024/RB AF285E151118C511 0084/0084 2021-08-10T10:13:23.874272 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckVerify_nr_test&ncbi_app_version=0.0.0 +24085/000/0024/RE AF285E151118C511 0085/0085 2021-08-10T10:13:23.875028 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000756978 0 0 +24085/000/0025/RB AF285E151118C511 0086/0086 2021-08-10T10:13:23.875517 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckEmptyIndexName&ncbi_app_version=0.0.0 +24085/000/0025/RE AF285E151118C511 0087/0087 2021-08-10T10:13:23.875586 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000069856 0 0 +24085/000/0026/RB AF285E151118C511 0088/0088 2021-08-10T10:13:23.876020 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckNoIndex&ncbi_app_version=0.0.0 +24085/000/0026/RE AF285E151118C511 0089/0089 2021-08-10T10:13:23.880506 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.004482984 0 0 +24085/000/0027/RB AF285E151118C511 0090/0090 2021-08-10T10:13:23.880938 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=CheckOptionValidation&ncbi_app_version=0.0.0 +24085/000/0027/RE AF285E151118C511 0091/0091 2021-08-10T10:13:23.880989 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000051975 0 0 +24085/000/0028/RB AF285E151118C511 0092/0092 2021-08-10T10:13:23.881394 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BadOptionsThrow&ncbi_app_version=0.0.0 +24085/000/0028/RE AF285E151118C511 0093/0093 2021-08-10T10:13:23.881859 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.000462055 0 0 +24085/000/0029/RB AF285E151118C511 0094/0094 2021-08-10T10:13:23.882242 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BlastKmerSearch&ncbi_app_version=0.0.0 +24085/000/0029/RE AF285E151118C511 0095/0095 2021-08-10T10:13:24.088088 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.205811977 0 0 +24085/000/0030/RB AF285E151118C511 0096/0096 2021-08-10T10:13:24.088893 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BlastKmerMultipleQuerySearch&ncbi_app_version=0.0.0 lcl|3 Warning: WARNING: No KMERs in query -43673/000/0030/RE 113AAA9931E8F511 0097/0097 2022-09-11T13:46:12.253609 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.053285121 0 0 -43673/000/0031/RB 113AAA9931E8F511 0098/0098 2022-09-11T13:46:12.254331 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BlastKmerNoQueryCtor&ncbi_app_version=0.0.0 -43673/000/0031/RE 113AAA9931E8F511 0099/0099 2022-09-11T13:46:12.308450 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.054087877 0 0 +24085/000/0030/RE AF285E151118C511 0097/0097 2021-08-10T10:13:24.219432 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.130507946 0 0 +24085/000/0031/RB AF285E151118C511 0098/0098 2021-08-10T10:13:24.220231 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-start test_name=BlastKmerNoQueryCtor&ncbi_app_version=0.0.0 +24085/000/0031/RE AF285E151118C511 0099/0099 2021-08-10T10:13:24.272428 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test request-stop 200 0.052173852 0 0 *** 1 failure is detected in the test module "Master Test Suite" Executed 31 test cases. *** 1 failure is detected in the test module "Master Test Suite" -43673/000/0000/P 113AAA9931E8F511 0100/0100 2022-09-11T13:46:12.396923 ionos5-amd64 UNK_CLIENT UNK_SESSION proteinkmer_unit_test stop 201 19.012493848 +24085/000/0000/P AF285E151118C511 0100/0100 2021-08-10T10:13:24.720611 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test stop 201 19.787858009 Command exited with non-zero status 201 -real 19.11 -user 7.89 -sys 2.98 -Start time : 09/11/2022 13:45:53 -Stop time : 09/11/2022 13:46:12 +real 20.53 +user 8.25 +sys 2.19 +Start time : 08/10/2021 10:13:04 +Stop time : 08/10/2021 10:13:24 Load averages: @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@ -48208,136 +48242,136 @@ aascan_unit_test ====================================================================== -48116/000/0000/PB 113ABBF431E8F641 0001/0001 2022-09-11T13:46:12.735439 ionos5-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test -48116/000/0000/PB 113ABBF431E8F641 0002/0002 2022-09-11T13:46:12.735866 ionos5-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/ncbi-blast%2B-2.8.1/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Feb+24+2020+01:11:40&ncbi_app_package_name=blast&ncbi_app_package_version=2.8.1&ncbi_app_package_date=Feb+24+2020+01:11:40&ncbi_app_version=0.0.0 +25700/000/0000/PB AF2864641118C651 0001/0001 2021-08-10T10:13:25.107977 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-2.8.1/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test +25700/000/0000/PB AF2864641118C651 0002/0002 2021-08-10T10:13:25.108503 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder2&ncbi_app_path=/build/ncbi-blast%2B-2.8.1/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Feb+24+2020+01:11:40&ncbi_app_package_name=blast&ncbi_app_package_version=2.8.1&ncbi_app_package_date=Feb+24+2020+01:11:40&ncbi_app_version=0.0.0 Running 4 test cases... -48116/000/0001/RB 113ABBF431E8F641 0003/0003 2022-09-11T13:46:12.739051 ionos5-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=0.0.0 -48116/000/0001/R 113ABBF431E8F641 0004/0004 2022-09-11T13:46:12.740844 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test extra ncbi_phid=113ABBF431E8F6410000000000010001 -48116/000/0001/R 113ABBF431E8F641 0005/0005 2022-09-11T13:46:12.740873 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test extra issued_subhit=1 -48116/000/0001/R 113ABBF431E8F641 0006/0006 2022-09-11T13:46:12.741726 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0001/R 113ABBF431E8F641 0007/0007 2022-09-11T13:46:12.741757 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0001/R 113ABBF431E8F641 0008/0008 2022-09-11T13:46:12.741782 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0001/R 113ABBF431E8F641 0009/0009 2022-09-11T13:46:12.741803 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0001/R 113ABBF431E8F641 0011/0011 2022-09-11T13:46:12.742457 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test extra issued_subhit=2 -48116/000/0001/R 113ABBF431E8F641 0012/0012 2022-09-11T13:46:12.742583 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0001/R 113ABBF431E8F641 0013/0013 2022-09-11T13:46:12.742602 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0001/R 113ABBF431E8F641 0014/0014 2022-09-11T13:46:12.742622 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0001/R 113ABBF431E8F641 0015/0015 2022-09-11T13:46:12.742638 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0001/R 113ABBF431E8F641 0017/0017 2022-09-11T13:46:13.744682 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test extra issued_subhit=3 -48116/000/0001/R 113ABBF431E8F641 0018/0018 2022-09-11T13:46:13.745226 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0001/R 113ABBF431E8F641 0019/0019 2022-09-11T13:46:13.745289 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0001/R 113ABBF431E8F641 0020/0020 2022-09-11T13:46:13.745345 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0001/R 113ABBF431E8F641 0021/0021 2022-09-11T13:46:13.745388 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0001/R 113ABBF431E8F641 0023/0023 2022-09-11T13:46:16.247004 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test extra issued_subhit=4 -48116/000/0001/R 113ABBF431E8F641 0024/0024 2022-09-11T13:46:16.247299 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0001/R 113ABBF431E8F641 0025/0025 2022-09-11T13:46:16.247366 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0001/R 113ABBF431E8F641 0026/0026 2022-09-11T13:46:16.247416 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0001/R 113ABBF431E8F641 0027/0027 2022-09-11T13:46:16.247466 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0001/R 113ABBF431E8F641 0029/0029 2022-09-11T13:46:21.001767 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test extra issued_subhit=5 -48116/000/0001/R 113ABBF431E8F641 0030/0030 2022-09-11T13:46:21.001981 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0001/R 113ABBF431E8F641 0031/0031 2022-09-11T13:46:21.002015 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0001/R 113ABBF431E8F641 0032/0032 2022-09-11T13:46:21.002047 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0001/R 113ABBF431E8F641 0033/0033 2022-09-11T13:46:21.002075 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0001/RE 113ABBF431E8F641 0035/0035 2022-09-11T13:46:21.002440 ionos5-amd64 UNK_CLIENT 113ABBF431E8F641_0001SID aascan_unit_test request-stop 500 8.263382911 0 0 +25700/000/0001/RB AF2864641118C651 0003/0003 2021-08-10T10:13:25.111924 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=0.0.0 +25700/000/0001/R AF2864641118C651 0004/0004 2021-08-10T10:13:25.114187 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test extra ncbi_phid=AF2864641118C6510000000000010001 +25700/000/0001/R AF2864641118C651 0005/0005 2021-08-10T10:13:25.114227 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test extra issued_subhit=1 +25700/000/0001/R AF2864641118C651 0006/0006 2021-08-10T10:13:25.115213 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0001/R AF2864641118C651 0007/0007 2021-08-10T10:13:25.115252 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0001/R AF2864641118C651 0008/0008 2021-08-10T10:13:25.115285 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0001/R AF2864641118C651 0009/0009 2021-08-10T10:13:25.115310 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0001/R AF2864641118C651 0011/0011 2021-08-10T10:13:25.116206 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test extra issued_subhit=2 +25700/000/0001/R AF2864641118C651 0012/0012 2021-08-10T10:13:25.116360 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0001/R AF2864641118C651 0013/0013 2021-08-10T10:13:25.116396 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0001/R AF2864641118C651 0014/0014 2021-08-10T10:13:25.116428 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0001/R AF2864641118C651 0015/0015 2021-08-10T10:13:25.116453 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0001/R AF2864641118C651 0017/0017 2021-08-10T10:13:26.117730 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test extra issued_subhit=3 +25700/000/0001/R AF2864641118C651 0018/0018 2021-08-10T10:13:26.117967 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0001/R AF2864641118C651 0019/0019 2021-08-10T10:13:26.118000 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0001/R AF2864641118C651 0020/0020 2021-08-10T10:13:26.118032 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0001/R AF2864641118C651 0021/0021 2021-08-10T10:13:26.118057 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0001/R AF2864641118C651 0023/0023 2021-08-10T10:13:28.619232 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test extra issued_subhit=4 +25700/000/0001/R AF2864641118C651 0024/0024 2021-08-10T10:13:28.619437 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0001/R AF2864641118C651 0025/0025 2021-08-10T10:13:28.619471 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0001/R AF2864641118C651 0026/0026 2021-08-10T10:13:28.619505 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0001/R AF2864641118C651 0027/0027 2021-08-10T10:13:28.619530 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0001/R AF2864641118C651 0029/0029 2021-08-10T10:13:33.370730 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test extra issued_subhit=5 +25700/000/0001/R AF2864641118C651 0030/0030 2021-08-10T10:13:33.370923 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0001/R AF2864641118C651 0031/0031 2021-08-10T10:13:33.370957 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0001/R AF2864641118C651 0032/0032 2021-08-10T10:13:33.370991 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0001/R AF2864641118C651 0033/0033 2021-08-10T10:13:33.371015 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0001/RE AF2864641118C651 0035/0035 2021-08-10T10:13:33.371324 i-capture-the-hostname UNK_CLIENT AF2864641118C651_0001SID aascan_unit_test request-stop 500 8.259403944 0 0 unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "./c++/src/objtools/data_loaders/genbank/reader.cpp", line 187: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection  ./c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. -48116/000/0002/RB 113ABBF431E8F641 0038/0038 2022-09-11T13:46:21.003349 ionos5-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=0.0.0 -48116/000/0002/R 113ABBF431E8F641 0039/0039 2022-09-11T13:46:21.004219 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test extra ncbi_phid=113ABBF431E8F6410000000000020002 -48116/000/0002/R 113ABBF431E8F641 0040/0040 2022-09-11T13:46:21.004240 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test extra issued_subhit=1 -48116/000/0002/R 113ABBF431E8F641 0041/0041 2022-09-11T13:46:21.004392 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0002/R 113ABBF431E8F641 0042/0042 2022-09-11T13:46:21.004417 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0002/R 113ABBF431E8F641 0043/0043 2022-09-11T13:46:21.004443 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0002/R 113ABBF431E8F641 0044/0044 2022-09-11T13:46:21.004464 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0002/R 113ABBF431E8F641 0046/0046 2022-09-11T13:46:21.005226 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test extra issued_subhit=2 -48116/000/0002/R 113ABBF431E8F641 0047/0047 2022-09-11T13:46:21.005381 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0002/R 113ABBF431E8F641 0048/0048 2022-09-11T13:46:21.005406 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0002/R 113ABBF431E8F641 0049/0049 2022-09-11T13:46:21.005432 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0002/R 113ABBF431E8F641 0050/0050 2022-09-11T13:46:21.005452 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0002/R 113ABBF431E8F641 0052/0052 2022-09-11T13:46:22.006889 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test extra issued_subhit=3 -48116/000/0002/R 113ABBF431E8F641 0053/0053 2022-09-11T13:46:22.007176 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0002/R 113ABBF431E8F641 0054/0054 2022-09-11T13:46:22.007223 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0002/R 113ABBF431E8F641 0055/0055 2022-09-11T13:46:22.007266 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0002/R 113ABBF431E8F641 0056/0056 2022-09-11T13:46:22.007301 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0002/R 113ABBF431E8F641 0058/0058 2022-09-11T13:46:24.509282 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test extra issued_subhit=4 -48116/000/0002/R 113ABBF431E8F641 0059/0059 2022-09-11T13:46:24.509617 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0002/R 113ABBF431E8F641 0060/0060 2022-09-11T13:46:24.509701 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0002/R 113ABBF431E8F641 0061/0061 2022-09-11T13:46:24.509776 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0002/R 113ABBF431E8F641 0062/0062 2022-09-11T13:46:24.509815 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0002/R 113ABBF431E8F641 0064/0064 2022-09-11T13:46:29.261061 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test extra issued_subhit=5 -48116/000/0002/R 113ABBF431E8F641 0065/0065 2022-09-11T13:46:29.261423 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0002/R 113ABBF431E8F641 0066/0066 2022-09-11T13:46:29.261491 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0002/R 113ABBF431E8F641 0067/0067 2022-09-11T13:46:29.261549 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0002/R 113ABBF431E8F641 0068/0068 2022-09-11T13:46:29.261594 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0002/RE 113ABBF431E8F641 0070/0070 2022-09-11T13:46:29.262010 ionos5-amd64 UNK_CLIENT 113ABBF431E8F6C1_0002SID aascan_unit_test request-stop 500 8.258655071 0 0 +25700/000/0002/RB AF2864641118C651 0038/0038 2021-08-10T10:13:33.372080 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=0.0.0 +25700/000/0002/R AF2864641118C651 0039/0039 2021-08-10T10:13:33.373017 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test extra ncbi_phid=AF2864641118C6510000000000020002 +25700/000/0002/R AF2864641118C651 0040/0040 2021-08-10T10:13:33.373043 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test extra issued_subhit=1 +25700/000/0002/R AF2864641118C651 0041/0041 2021-08-10T10:13:33.373265 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0002/R AF2864641118C651 0042/0042 2021-08-10T10:13:33.373298 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0002/R AF2864641118C651 0043/0043 2021-08-10T10:13:33.373331 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0002/R AF2864641118C651 0044/0044 2021-08-10T10:13:33.373357 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0002/R AF2864641118C651 0046/0046 2021-08-10T10:13:33.374180 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test extra issued_subhit=2 +25700/000/0002/R AF2864641118C651 0047/0047 2021-08-10T10:13:33.374346 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0002/R AF2864641118C651 0048/0048 2021-08-10T10:13:33.374376 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0002/R AF2864641118C651 0049/0049 2021-08-10T10:13:33.374408 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0002/R AF2864641118C651 0050/0050 2021-08-10T10:13:33.374434 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0002/R AF2864641118C651 0052/0052 2021-08-10T10:13:34.378027 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test extra issued_subhit=3 +25700/000/0002/R AF2864641118C651 0053/0053 2021-08-10T10:13:34.378227 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0002/R AF2864641118C651 0054/0054 2021-08-10T10:13:34.378257 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0002/R AF2864641118C651 0055/0055 2021-08-10T10:13:34.378286 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0002/R AF2864641118C651 0056/0056 2021-08-10T10:13:34.378310 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0002/R AF2864641118C651 0058/0058 2021-08-10T10:13:36.880099 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test extra issued_subhit=4 +25700/000/0002/R AF2864641118C651 0059/0059 2021-08-10T10:13:36.880357 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0002/R AF2864641118C651 0060/0060 2021-08-10T10:13:36.880398 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0002/R AF2864641118C651 0061/0061 2021-08-10T10:13:36.880439 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0002/R AF2864641118C651 0062/0062 2021-08-10T10:13:36.880472 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0002/R AF2864641118C651 0064/0064 2021-08-10T10:13:41.632307 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test extra issued_subhit=5 +25700/000/0002/R AF2864641118C651 0065/0065 2021-08-10T10:13:41.632626 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0002/R AF2864641118C651 0066/0066 2021-08-10T10:13:41.632681 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0002/R AF2864641118C651 0067/0067 2021-08-10T10:13:41.632739 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0002/R AF2864641118C651 0068/0068 2021-08-10T10:13:41.632794 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0002/RE AF2864641118C651 0070/0070 2021-08-10T10:13:41.633240 i-capture-the-hostname UNK_CLIENT AF2864641118C6D1_0002SID aascan_unit_test request-stop 500 8.261155128 0 0 unknown location(0): fatal error: in "aascan/ScanMaxHitsTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "./c++/src/objtools/data_loaders/genbank/reader.cpp", line 187: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection  ./c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(331): last checkpoint: "ScanMaxHitsTest" fixture entry. -48116/000/0003/RB 113ABBF431E8F641 0073/0073 2022-09-11T13:46:29.263445 ionos5-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=SkipMaskedRanges&ncbi_app_version=0.0.0 -48116/000/0003/R 113ABBF431E8F641 0074/0074 2022-09-11T13:46:29.265153 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test extra ncbi_phid=113ABBF431E8F6410000000000030003 -48116/000/0003/R 113ABBF431E8F641 0075/0075 2022-09-11T13:46:29.265194 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test extra issued_subhit=1 -48116/000/0003/R 113ABBF431E8F641 0076/0076 2022-09-11T13:46:29.265475 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0003/R 113ABBF431E8F641 0077/0077 2022-09-11T13:46:29.265519 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0003/R 113ABBF431E8F641 0078/0078 2022-09-11T13:46:29.265572 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0003/R 113ABBF431E8F641 0079/0079 2022-09-11T13:46:29.265619 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0003/R 113ABBF431E8F641 0081/0081 2022-09-11T13:46:29.266861 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test extra issued_subhit=2 -48116/000/0003/R 113ABBF431E8F641 0082/0082 2022-09-11T13:46:29.267110 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0003/R 113ABBF431E8F641 0083/0083 2022-09-11T13:46:29.267154 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0003/R 113ABBF431E8F641 0084/0084 2022-09-11T13:46:29.267201 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0003/R 113ABBF431E8F641 0085/0085 2022-09-11T13:46:29.267237 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0003/R 113ABBF431E8F641 0087/0087 2022-09-11T13:46:30.268489 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test extra issued_subhit=3 -48116/000/0003/R 113ABBF431E8F641 0088/0088 2022-09-11T13:46:30.268791 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0003/R 113ABBF431E8F641 0089/0089 2022-09-11T13:46:30.268839 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0003/R 113ABBF431E8F641 0090/0090 2022-09-11T13:46:30.268875 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0003/R 113ABBF431E8F641 0091/0091 2022-09-11T13:46:30.268902 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0003/R 113ABBF431E8F641 0093/0093 2022-09-11T13:46:32.774391 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test extra issued_subhit=4 -48116/000/0003/R 113ABBF431E8F641 0094/0094 2022-09-11T13:46:32.774716 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#14000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0003/R 113ABBF431E8F641 0095/0095 2022-09-11T13:46:32.774766 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0003/R 113ABBF431E8F641 0096/0096 2022-09-11T13:46:32.774815 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0003/R 113ABBF431E8F641 0097/0097 2022-09-11T13:46:32.774854 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0003/R 113ABBF431E8F641 0099/0099 2022-09-11T13:46:37.526186 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test extra issued_subhit=5 -48116/000/0003/R 113ABBF431E8F641 0100/0100 2022-09-11T13:46:37.526445 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#15000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0003/R 113ABBF431E8F641 0101/0101 2022-09-11T13:46:37.526479 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0003/R 113ABBF431E8F641 0102/0102 2022-09-11T13:46:37.526513 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0003/R 113ABBF431E8F641 0103/0103 2022-09-11T13:46:37.526541 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0003/RE 113ABBF431E8F641 0105/0105 2022-09-11T13:46:37.526840 ionos5-amd64 UNK_CLIENT 113ABBF431E8F751_0003SID aascan_unit_test request-stop 500 8.263406038 0 0 +25700/000/0003/RB AF2864641118C651 0073/0073 2021-08-10T10:13:41.634436 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=SkipMaskedRanges&ncbi_app_version=0.0.0 +25700/000/0003/R AF2864641118C651 0074/0074 2021-08-10T10:13:41.636006 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test extra ncbi_phid=AF2864641118C6510000000000030003 +25700/000/0003/R AF2864641118C651 0075/0075 2021-08-10T10:13:41.636047 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test extra issued_subhit=1 +25700/000/0003/R AF2864641118C651 0076/0076 2021-08-10T10:13:41.636304 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0003/R AF2864641118C651 0077/0077 2021-08-10T10:13:41.636351 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0003/R AF2864641118C651 0078/0078 2021-08-10T10:13:41.636403 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0003/R AF2864641118C651 0079/0079 2021-08-10T10:13:41.636442 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0003/R AF2864641118C651 0081/0081 2021-08-10T10:13:41.637792 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test extra issued_subhit=2 +25700/000/0003/R AF2864641118C651 0082/0082 2021-08-10T10:13:41.638080 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0003/R AF2864641118C651 0083/0083 2021-08-10T10:13:41.638127 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0003/R AF2864641118C651 0084/0084 2021-08-10T10:13:41.638178 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0003/R AF2864641118C651 0085/0085 2021-08-10T10:13:41.638225 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0003/R AF2864641118C651 0087/0087 2021-08-10T10:13:42.640036 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test extra issued_subhit=3 +25700/000/0003/R AF2864641118C651 0088/0088 2021-08-10T10:13:42.640373 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0003/R AF2864641118C651 0089/0089 2021-08-10T10:13:42.640430 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0003/R AF2864641118C651 0090/0090 2021-08-10T10:13:42.640488 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0003/R AF2864641118C651 0091/0091 2021-08-10T10:13:42.640533 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0003/R AF2864641118C651 0093/0093 2021-08-10T10:13:45.142119 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test extra issued_subhit=4 +25700/000/0003/R AF2864641118C651 0094/0094 2021-08-10T10:13:45.142329 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#14000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0003/R AF2864641118C651 0095/0095 2021-08-10T10:13:45.142365 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0003/R AF2864641118C651 0096/0096 2021-08-10T10:13:45.142401 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0003/R AF2864641118C651 0097/0097 2021-08-10T10:13:45.142428 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0003/R AF2864641118C651 0099/0099 2021-08-10T10:13:49.893726 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test extra issued_subhit=5 +25700/000/0003/R AF2864641118C651 0100/0100 2021-08-10T10:13:49.893955 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#15000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0003/R AF2864641118C651 0101/0101 2021-08-10T10:13:49.893993 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0003/R AF2864641118C651 0102/0102 2021-08-10T10:13:49.894036 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0003/R AF2864641118C651 0103/0103 2021-08-10T10:13:49.894066 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0003/RE AF2864641118C651 0105/0105 2021-08-10T10:13:49.894323 i-capture-the-hostname UNK_CLIENT AF2864641118C751_0003SID aascan_unit_test request-stop 500 8.259894847 0 0 unknown location(0): fatal error: in "aascan/SkipMaskedRanges": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "./c++/src/objtools/data_loaders/genbank/reader.cpp", line 187: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection  ./c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(384): last checkpoint: "SkipMaskedRanges" fixture entry. -48116/000/0004/RB 113ABBF431E8F641 0108/0108 2022-09-11T13:46:37.527727 ionos5-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanCheckScores&ncbi_app_version=0.0.0 -48116/000/0004/R 113ABBF431E8F641 0109/0109 2022-09-11T13:46:37.528616 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test extra ncbi_phid=113ABBF431E8F6410000000000040004 -48116/000/0004/R 113ABBF431E8F641 0110/0110 2022-09-11T13:46:37.528638 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test extra issued_subhit=1 -48116/000/0004/R 113ABBF431E8F641 0111/0111 2022-09-11T13:46:37.528853 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#16000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0004/R 113ABBF431E8F641 0112/0112 2022-09-11T13:46:37.528880 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0004/R 113ABBF431E8F641 0113/0113 2022-09-11T13:46:37.528906 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0004/R 113ABBF431E8F641 0114/0114 2022-09-11T13:46:37.528927 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0004/R 113ABBF431E8F641 0116/0116 2022-09-11T13:46:37.529630 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test extra issued_subhit=2 -48116/000/0004/R 113ABBF431E8F641 0117/0117 2022-09-11T13:46:37.529780 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#17000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0004/R 113ABBF431E8F641 0118/0118 2022-09-11T13:46:37.529805 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0004/R 113ABBF431E8F641 0119/0119 2022-09-11T13:46:37.529830 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0004/R 113ABBF431E8F641 0120/0120 2022-09-11T13:46:37.529851 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0004/R 113ABBF431E8F641 0122/0122 2022-09-11T13:46:38.534375 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test extra issued_subhit=3 -48116/000/0004/R 113ABBF431E8F641 0123/0123 2022-09-11T13:46:38.534722 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#18000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0004/R 113ABBF431E8F641 0124/0124 2022-09-11T13:46:38.534773 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0004/R 113ABBF431E8F641 0125/0125 2022-09-11T13:46:38.534824 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0004/R 113ABBF431E8F641 0126/0126 2022-09-11T13:46:38.534864 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0004/R 113ABBF431E8F641 0128/0128 2022-09-11T13:46:41.036049 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test extra issued_subhit=4 -48116/000/0004/R 113ABBF431E8F641 0129/0129 2022-09-11T13:46:41.036280 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#19000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0004/R 113ABBF431E8F641 0130/0130 2022-09-11T13:46:41.036309 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0004/R 113ABBF431E8F641 0131/0131 2022-09-11T13:46:41.036339 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0004/R 113ABBF431E8F641 0132/0132 2022-09-11T13:46:41.036362 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0004/R 113ABBF431E8F641 0134/0134 2022-09-11T13:46:45.790264 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test extra issued_subhit=5 -48116/000/0004/R 113ABBF431E8F641 0135/0135 2022-09-11T13:46:45.790569 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#20000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -48116/000/0004/R 113ABBF431E8F641 0136/0136 2022-09-11T13:46:45.790602 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -48116/000/0004/R 113ABBF431E8F641 0137/0137 2022-09-11T13:46:45.790637 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found -48116/000/0004/R 113ABBF431E8F641 0138/0138 2022-09-11T13:46:45.790663 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -48116/000/0004/RE 113ABBF431E8F641 0140/0140 2022-09-11T13:46:45.790954 ionos5-amd64 UNK_CLIENT 113ABBF431E8F7D1_0004SID aascan_unit_test request-stop 500 8.263228178 0 0 +25700/000/0004/RB AF2864641118C651 0108/0108 2021-08-10T10:13:49.895164 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanCheckScores&ncbi_app_version=0.0.0 +25700/000/0004/R AF2864641118C651 0109/0109 2021-08-10T10:13:49.896297 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test extra ncbi_phid=AF2864641118C6510000000000040004 +25700/000/0004/R AF2864641118C651 0110/0110 2021-08-10T10:13:49.896329 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test extra issued_subhit=1 +25700/000/0004/R AF2864641118C651 0111/0111 2021-08-10T10:13:49.896519 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#16000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0004/R AF2864641118C651 0112/0112 2021-08-10T10:13:49.896557 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0004/R AF2864641118C651 0113/0113 2021-08-10T10:13:49.896594 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0004/R AF2864641118C651 0114/0114 2021-08-10T10:13:49.896625 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0004/R AF2864641118C651 0116/0116 2021-08-10T10:13:49.897664 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test extra issued_subhit=2 +25700/000/0004/R AF2864641118C651 0117/0117 2021-08-10T10:13:49.897872 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#17000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0004/R AF2864641118C651 0118/0118 2021-08-10T10:13:49.897907 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0004/R AF2864641118C651 0119/0119 2021-08-10T10:13:49.897949 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0004/R AF2864641118C651 0120/0120 2021-08-10T10:13:49.897983 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0004/R AF2864641118C651 0122/0122 2021-08-10T10:13:50.899459 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test extra issued_subhit=3 +25700/000/0004/R AF2864641118C651 0123/0123 2021-08-10T10:13:50.899747 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#18000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0004/R AF2864641118C651 0124/0124 2021-08-10T10:13:50.899795 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0004/R AF2864641118C651 0125/0125 2021-08-10T10:13:50.899842 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0004/R AF2864641118C651 0126/0126 2021-08-10T10:13:50.899879 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0004/R AF2864641118C651 0128/0128 2021-08-10T10:13:53.402794 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test extra issued_subhit=4 +25700/000/0004/R AF2864641118C651 0129/0129 2021-08-10T10:13:53.403319 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#19000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0004/R AF2864641118C651 0130/0130 2021-08-10T10:13:53.403418 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0004/R AF2864641118C651 0131/0131 2021-08-10T10:13:53.403512 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0004/R AF2864641118C651 0132/0132 2021-08-10T10:13:53.403586 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0004/R AF2864641118C651 0134/0134 2021-08-10T10:13:58.155239 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test extra issued_subhit=5 +25700/000/0004/R AF2864641118C651 0135/0135 2021-08-10T10:13:58.155518 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4164: UNK_FUNC --- SSOCK#20000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +25700/000/0004/R AF2864641118C651 0136/0136 2021-08-10T10:13:58.155566 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1829: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=localhost(127.0.0.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +25700/000/0004/R AF2864641118C651 0137/0137 2021-08-10T10:13:58.155624 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 103: UNK_FUNC --- [ID2] Service not found +25700/000/0004/R AF2864641118C651 0138/0138 2021-08-10T10:13:58.155662 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +25700/000/0004/RE AF2864641118C651 0140/0140 2021-08-10T10:13:58.155998 i-capture-the-hostname UNK_CLIENT AF2864641118C7D1_0004SID aascan_unit_test request-stop 500 8.260835886 0 0 unknown location(0): fatal error: in "aascan/ScanCheckScores": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "./c++/src/objtools/data_loaders/genbank/reader.cpp", line 187: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection @@ -48348,13 +48382,13 @@ Executed 4 test cases. *** 4 failures are detected in the test module "Master Test Suite" -48116/000/0000/P 113ABBF431E8F641 0143/0143 2022-09-11T13:46:45.792485 ionos5-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test stop 201 33.061142921 +25700/000/0000/P AF2864641118C651 0143/0143 2021-08-10T10:13:58.157804 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test stop 201 33.054519891 Command exited with non-zero status 201 -real 33.14 -user 0.11 +real 33.16 +user 0.14 sys 0.05 -Start time : 09/11/2022 13:46:12 -Stop time : 09/11/2022 13:46:45 +Start time : 08/10/2021 10:13:25 +Stop time : 08/10/2021 10:13:58 Load averages: @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@ -48517,21 +48551,23 @@ dh_md5sums -O-Dc\+\+ dh_builddeb -O-Dc\+\+ dpkg-deb: building package 'ncbi-blast+-legacy' in '../ncbi-blast+-legacy_2.8.1-1+deb10u1_all.deb'. -dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.8.1-1+deb10u1_amd64.deb'. -dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.8.1-1+deb10u1_amd64.deb'. dpkg-deb: building package 'blast2' in '../blast2_2.8.1-1+deb10u1_all.deb'. +dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.8.1-1+deb10u1_amd64.deb'. +dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.8.1-1+deb10u1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ncbi-blast+_2.8.1-1+deb10u1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/29954/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/29954/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18737 and its subdirectories -I: Current time: Sun Sep 11 13:48:56 -12 2022 -I: pbuilder-time-stamp: 1662947336 +I: removing directory /srv/workspace/pbuilder/29954 and its subdirectories +I: Current time: Tue Aug 10 10:19:34 +14 2021 +I: pbuilder-time-stamp: 1628540374