Diff of the two buildlogs: -- --- b1/build.log 2021-08-09 18:55:13.310641375 +0000 +++ b2/build.log 2021-08-09 19:21:13.184304435 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Aug 9 06:07:39 -12 2021 -I: pbuilder-time-stamp: 1628532459 +I: Current time: Mon Sep 12 15:18:18 +14 2022 +I: pbuilder-time-stamp: 1662945498 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Mon Feb 4 03:20:29 2019 -12 +gpgv: Signature made Tue Feb 5 05:20:29 2019 +14 gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./nipype_1.1.8-1.dsc @@ -37,136 +37,170 @@ dpkg-source: info: applying deb_git_hash I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21584/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/24027/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/24027/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/24027/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a305e65978cc4b58a52101595b6acea3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21584' - PS1='# ' - PS2='> ' + INVOCATION_ID=539d7e2bbba247ceacbe9b6879323e25 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=24027 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6zo4EIKIlb/pbuilderrc_AUox --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6zo4EIKIlb/b1 --logfile b1/build.log nipype_1.1.8-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6zo4EIKIlb/pbuilderrc_MAMn --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6zo4EIKIlb/b2 --logfile b2/build.log nipype_1.1.8-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 6 20:24 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/21584/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 12 15:18 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 10 04:46 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/24027/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -462,7 +496,7 @@ Get: 195 http://deb.debian.org/debian buster/main amd64 python-simplejson amd64 3.16.0-1 [72.6 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 python-sympy all 1.3-2 [3500 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 python-traits amd64 4.6.0-1+b2 [237 kB] -Fetched 87.1 MB in 6s (15.0 MB/s) +Fetched 87.1 MB in 2s (56.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -1312,7 +1346,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/nipype-1.1.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/nipype-1.1.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package nipype dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable @@ -3235,9 +3269,9 @@ TCompCor TSNR ICC -210809-06:14:09,3 nipype.interface WARNING: +220912-15:20:55,406 nipype.interface WARNING: VTK was not found -210809-06:14:09,3 nipype.interface WARNING: +220912-15:20:55,407 nipype.interface WARNING: tvtk wasn't found ComputeMeshWarp MeshWarpMaths @@ -3492,9 +3526,9 @@ SplineFilter TrackMerge WARNING: Empty - nipype.interfaces.dipy -210809-06:14:18,227 nipype.interface INFO: +220912-15:20:57,872 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate RecoBundles, LabelsBundles, DeterministicTracking. -210809-06:14:18,268 nipype.interface INFO: +220912-15:20:57,884 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate DKIModel, MapmriModel, DTIModel, CSAModel, CSDModel. APMQball DipyBaseInterface @@ -4181,72 +4215,72 @@ WARNING: Empty - nipype.workflows.dmri.camino /build/nipype-1.1.8/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed warnings.warn('cmp not installed') -210809-06:14:39,666 nipype.interface WARNING: +220912-15:21:03,332 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:14:44,481 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpaExIML.png (graph2use=hierarchical, simple_form=True). -210809-06:14:46,314 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp2TA7jd.png (graph2use=hierarchical, simple_form=True). +220912-15:21:06,269 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpmRhEpF.png (graph2use=hierarchical, simple_form=True). +220912-15:21:07,318 nipype.workflow INFO: + Generated workflow graph: /tmp/tmppGbfMt.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.connectivity -210809-06:14:47,252 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpMbMZ5R.png (graph2use=hierarchical, simple_form=True). -210809-06:14:48,385 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp4qm5oT.png (graph2use=hierarchical, simple_form=True). +220912-15:21:07,906 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp5lwOcf.png (graph2use=hierarchical, simple_form=True). +220912-15:21:08,253 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpNYR23V.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dipy -210809-06:14:48,426 nipype.interface WARNING: +220912-15:21:08,274 nipype.interface WARNING: Unable to import [u'dipy']; Denoise interface may fail to run -210809-06:14:49,293 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpjdUabX.png (graph2use=hierarchical, simple_form=True). +220912-15:21:08,846 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpvLVmxI.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dtitk -210809-06:14:50,424 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpyM3GWS.png (graph2use=hierarchical, simple_form=True). -210809-06:14:51,825 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpHAolU1.png (graph2use=hierarchical, simple_form=True). +220912-15:21:09,456 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpyaepsG.png (graph2use=hierarchical, simple_form=True). +220912-15:21:10,320 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpndTgaE.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.fsl /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') -210809-06:15:05,331 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpPOp7tf.png (graph2use=hierarchical, simple_form=True). -210809-06:15:06,711 nipype.workflow INFO: - Generated workflow graph: /tmp/tmphMNDmV.png (graph2use=hierarchical, simple_form=True). -210809-06:15:10,707 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpetMudV.png (graph2use=hierarchical, simple_form=True). -210809-06:15:12,131 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp_lJaLv.png (graph2use=hierarchical, simple_form=True). -210809-06:15:13,347 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpTKHWwt.png (graph2use=hierarchical, simple_form=True). -210809-06:15:14,228 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp_6vx_b.png (graph2use=hierarchical, simple_form=True). -210809-06:15:16,467 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpTXKXZ0.png (graph2use=hierarchical, simple_form=True). -210809-06:15:17,402 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpG_Wzc8.png (graph2use=hierarchical, simple_form=True). -210809-06:15:19,317 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp3Y9lvR.png (graph2use=hierarchical, simple_form=True). -210809-06:15:20,530 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpW8ZW51.png (graph2use=hierarchical, simple_form=True). -210809-06:15:21,237 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp4Do181.png (graph2use=hierarchical, simple_form=True). -210809-06:15:21,918 nipype.workflow INFO: - Generated workflow graph: /tmp/tmplSCfbV.png (graph2use=hierarchical, simple_form=True). +220912-15:21:16,543 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpoovqHd.png (graph2use=hierarchical, simple_form=True). +220912-15:21:17,443 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpOgXOSA.png (graph2use=hierarchical, simple_form=True). +220912-15:21:19,168 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpspWET4.png (graph2use=hierarchical, simple_form=True). +220912-15:21:19,813 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpftRZvC.png (graph2use=hierarchical, simple_form=True). +220912-15:21:20,482 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpRe4kML.png (graph2use=hierarchical, simple_form=True). +220912-15:21:21,128 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpbLRk9e.png (graph2use=hierarchical, simple_form=True). +220912-15:21:22,115 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpVq3ztm.png (graph2use=hierarchical, simple_form=True). +220912-15:21:22,842 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpgouuv5.png (graph2use=hierarchical, simple_form=True). +220912-15:21:24,8 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpb19fAt.png (graph2use=hierarchical, simple_form=True). +220912-15:21:24,492 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpdUYqyl.png (graph2use=hierarchical, simple_form=True). +220912-15:21:25,170 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpa9ZQPn.png (graph2use=hierarchical, simple_form=True). +220912-15:21:25,459 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpadPvaF.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') -210809-06:15:24,2 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp_tlM1z.png (graph2use=hierarchical, simple_form=True). -210809-06:15:24,654 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpDFNh_q.png (graph2use=hierarchical, simple_form=True). -210809-06:15:25,888 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp1dF1e9.png (graph2use=hierarchical, simple_form=True). -210809-06:15:26,672 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpQmqtl5.png (graph2use=hierarchical, simple_form=True). -210809-06:15:27,727 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpBxoojM.png (graph2use=hierarchical, simple_form=True). -210809-06:15:28,580 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp2B0nac.png (graph2use=hierarchical, simple_form=True). +220912-15:21:27,8 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpar1hvg.png (graph2use=hierarchical, simple_form=True). +220912-15:21:27,481 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpchHFTU.png (graph2use=hierarchical, simple_form=True). +220912-15:21:27,938 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp23xnz3.png (graph2use=hierarchical, simple_form=True). +220912-15:21:28,546 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpIwrxE9.png (graph2use=hierarchical, simple_form=True). +220912-15:21:29,269 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpBVHwg4.png (graph2use=hierarchical, simple_form=True). +220912-15:21:29,848 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGyLm1N.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:143: UserWarning: NO FSL found warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:210: UserWarning: NO FSL found @@ -4259,165 +4293,165 @@ warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:550: UserWarning: NO FSL found warn('NO FSL found') -210809-06:15:30,459 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpr82m8z.png (graph2use=hierarchical, simple_form=True). -210809-06:15:31,250 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpuSLrtU.png (graph2use=hierarchical, simple_form=True). -210809-06:15:32,95 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp3PULZX.png (graph2use=hierarchical, simple_form=True). -210809-06:15:32,887 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpiKwhb8.png (graph2use=hierarchical, simple_form=True). -210809-06:15:34,262 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp7B3ZXz.png (graph2use=hierarchical, simple_form=True). -210809-06:15:35,95 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpwQMiM4.png (graph2use=hierarchical, simple_form=True). -210809-06:15:36,436 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpr63v01.png (graph2use=hierarchical, simple_form=True). -210809-06:15:37,216 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpy0k9Tx.png (graph2use=hierarchical, simple_form=True). -210809-06:15:38,94 nipype.workflow INFO: - Generated workflow graph: /tmp/tmptb6XpG.png (graph2use=hierarchical, simple_form=True). -210809-06:15:38,850 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpkUO9qC.png (graph2use=hierarchical, simple_form=True). +220912-15:21:30,938 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpoPGAUM.png (graph2use=hierarchical, simple_form=True). +220912-15:21:31,396 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpUtoy0K.png (graph2use=hierarchical, simple_form=True). +220912-15:21:31,754 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpaeLrx5.png (graph2use=hierarchical, simple_form=True). +220912-15:21:32,402 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpcW2Zww.png (graph2use=hierarchical, simple_form=True). +220912-15:21:33,316 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpaTRFuo.png (graph2use=hierarchical, simple_form=True). +220912-15:21:33,693 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpA8Gqfo.png (graph2use=hierarchical, simple_form=True). +220912-15:21:34,262 nipype.workflow INFO: + Generated workflow graph: /tmp/tmptaEKJ3.png (graph2use=hierarchical, simple_form=True). +220912-15:21:35,13 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpukX6mj.png (graph2use=hierarchical, simple_form=True). +220912-15:21:35,799 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp7GkAwM.png (graph2use=hierarchical, simple_form=True). +220912-15:21:36,508 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp1MXhnX.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.mrtrix -210809-06:15:39,108 nipype.interface WARNING: +220912-15:21:36,702 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:15:39,116 nipype.interface WARNING: +220912-15:21:36,708 nipype.interface WARNING: Unable to import [u'dipy']; TrackDensityMap interface may fail to run -210809-06:15:39,130 nipype.interface WARNING: +220912-15:21:36,717 nipype.interface WARNING: Unable to import [u'cmp']; Parcellate interface may fail to run -210809-06:15:39,143 nipype.interface WARNING: +220912-15:21:36,719 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:15:39,292 nipype.interface WARNING: +220912-15:21:36,828 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:15:47,879 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpZldW5I.png (graph2use=hierarchical, simple_form=True). -210809-06:15:47,950 nipype.interface WARNING: +220912-15:21:41,630 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpPzpVia.png (graph2use=hierarchical, simple_form=True). +220912-15:21:41,654 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:15:49,450 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpW5Onx4.png (graph2use=hierarchical, simple_form=True). +220912-15:21:42,572 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpuWvSBo.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri WARNING: Empty - nipype.workflows.fmri.fsl -210809-06:15:50,606 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpxllCne.png (graph2use=hierarchical, simple_form=True). -210809-06:15:51,495 nipype.workflow INFO: - Generated workflow graph: /tmp/tmppyUchl.png (graph2use=hierarchical, simple_form=True). -210809-06:15:52,188 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpKF2EVT.png (graph2use=hierarchical, simple_form=True). -210809-06:15:55,558 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpn0z9aN.png (graph2use=hierarchical, simple_form=True). -210809-06:15:57,174 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpmUU6ux.png (graph2use=hierarchical, simple_form=True). -210809-06:15:59,212 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpaE0IxA.png (graph2use=hierarchical, simple_form=True). -210809-06:16:00,320 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpHkFOav.png (graph2use=hierarchical, simple_form=True). +220912-15:21:43,314 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpf4C8Uy.png (graph2use=hierarchical, simple_form=True). +220912-15:21:43,692 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpn446MV.png (graph2use=hierarchical, simple_form=True). +220912-15:21:44,12 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpDiz2NM.png (graph2use=hierarchical, simple_form=True). +220912-15:21:45,908 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp6CHPQu.png (graph2use=hierarchical, simple_form=True). +220912-15:21:46,687 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpXg25kU.png (graph2use=hierarchical, simple_form=True). +220912-15:21:47,717 nipype.workflow INFO: + Generated workflow graph: /tmp/tmplAM1lx.png (graph2use=hierarchical, simple_form=True). +220912-15:21:48,466 nipype.workflow INFO: + Generated workflow graph: /tmp/tmphzrIXE.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri.spm WARNING: Empty - nipype.workflows.fmri.spm.estimate -210809-06:16:00,456 nipype.workflow CRITICAL: +220912-15:21:48,506 nipype.workflow CRITICAL: SPM not found -210809-06:16:01,68 nipype.workflow CRITICAL: +220912-15:21:48,636 nipype.workflow CRITICAL: SPM not found -210809-06:16:02,188 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpFoiAaN.png (graph2use=hierarchical, simple_form=True). -210809-06:16:03,553 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpu0Uc9n.png (graph2use=hierarchical, simple_form=True). -210809-06:16:04,659 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpLtCUHm.png (graph2use=hierarchical, simple_form=True). +220912-15:21:49,329 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpKS77Qh.png (graph2use=hierarchical, simple_form=True). +220912-15:21:49,971 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpaBmVGQ.png (graph2use=hierarchical, simple_form=True). +220912-15:21:50,744 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpXumcnS.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.graph WARNING: Empty - nipype.workflows.misc WARNING: Empty - nipype.workflows.rsfmri WARNING: Empty - nipype.workflows.rsfmri.fsl -210809-06:16:06,38 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpIoaqV4.png (graph2use=hierarchical, simple_form=True). -210809-06:16:07,239 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp8BSN64.png (graph2use=hierarchical, simple_form=True). +220912-15:21:51,522 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpODK51Z.png (graph2use=hierarchical, simple_form=True). +220912-15:21:52,234 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpVhWRJX.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri WARNING: Empty - nipype.workflows.smri.ants -210809-06:16:09,267 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp4SJzMY.png (graph2use=hierarchical, simple_form=True). -210809-06:16:11,340 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpZYu91O.png (graph2use=hierarchical, simple_form=True). +220912-15:21:53,366 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpepluzJ.png (graph2use=hierarchical, simple_form=True). +220912-15:21:53,977 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp9kKUSK.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.freesurfer WARNING: Empty - nipype.workflows.smri.freesurfer.autorecon3 WARNING: Empty - nipype.workflows.smri.freesurfer.ba_maps -210809-06:16:24,672 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpxMystk.png (graph2use=hierarchical, simple_form=True). -210809-06:16:24,691 nipype.workflow INFO: +220912-15:22:00,987 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpWfB0VI.png (graph2use=hierarchical, simple_form=True). +220912-15:22:00,992 nipype.workflow INFO: FreeSurfer Version: 5.3 -210809-06:17:25,961 nipype.workflow INFO: - Generated workflow graph: /tmp/tmplekMmD.png (graph2use=hierarchical, simple_form=True). -210809-06:17:27,344 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpRqxyhR.png (graph2use=hierarchical, simple_form=True). +220912-15:22:37,773 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpf6rzaL.png (graph2use=hierarchical, simple_form=True). +220912-15:22:39,49 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpsmukGc.png (graph2use=hierarchical, simple_form=True). FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow -210809-06:17:28,337 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpA2X5c4.png (graph2use=hierarchical, simple_form=True). -210809-06:17:29,151 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp0fdSsy.png (graph2use=hierarchical, simple_form=True). -210809-06:17:30,11 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpOndXAN.png (graph2use=hierarchical, simple_form=True). +220912-15:22:40,63 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGghQS8.png (graph2use=hierarchical, simple_form=True). +220912-15:22:40,918 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpEcCxNC.png (graph2use=hierarchical, simple_form=True). +220912-15:22:41,628 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpRrSJci.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.niftyreg -210809-06:17:30,49 nipype.interface WARNING: +220912-15:22:41,642 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,63 nipype.interface WARNING: +220912-15:22:41,646 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,111 nipype.interface WARNING: +220912-15:22:41,663 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,121 nipype.interface WARNING: +220912-15:22:41,667 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,176 nipype.interface WARNING: +220912-15:22:41,686 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,185 nipype.interface WARNING: +220912-15:22:41,689 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,240 nipype.interface WARNING: +220912-15:22:41,708 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,253 nipype.interface WARNING: +220912-15:22:41,711 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,310 nipype.interface WARNING: +220912-15:22:41,732 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,320 nipype.interface WARNING: +220912-15:22:41,736 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,380 nipype.interface WARNING: +220912-15:22:41,785 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,390 nipype.interface WARNING: +220912-15:22:41,792 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,450 nipype.interface WARNING: +220912-15:22:41,812 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,461 nipype.interface WARNING: +220912-15:22:41,817 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,554 nipype.interface WARNING: +220912-15:22:41,850 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,570 nipype.interface WARNING: +220912-15:22:41,855 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,663 nipype.interface WARNING: +220912-15:22:41,887 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,676 nipype.interface WARNING: +220912-15:22:41,895 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,779 nipype.interface WARNING: +220912-15:22:41,929 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,791 nipype.interface WARNING: +220912-15:22:41,934 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,882 nipype.interface WARNING: +220912-15:22:41,967 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:30,900 nipype.interface WARNING: +220912-15:22:41,975 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:31,1 nipype.interface WARNING: +220912-15:22:42,13 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:31,14 nipype.interface WARNING: +220912-15:22:42,16 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:31,38 nipype.interface WARNING: +220912-15:22:42,27 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:31,52 nipype.interface WARNING: +220912-15:22:42,31 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:17:32,869 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpjzGIsY.png (graph2use=hierarchical, simple_form=True). -210809-06:17:33,725 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpAI0t7U.png (graph2use=hierarchical, simple_form=True). -210809-06:17:34,601 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpGw_vpo.png (graph2use=hierarchical, simple_form=True). +220912-15:22:43,683 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpO9XB0W.png (graph2use=hierarchical, simple_form=True). +220912-15:22:44,566 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpc8MHxJ.png (graph2use=hierarchical, simple_form=True). +220912-15:22:44,969 nipype.workflow INFO: + Generated workflow graph: /tmp/tmptmn1QJ.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.warp 203 files written Build API docs finished. @@ -4440,9 +4474,9 @@ TCompCor TSNR ICC -210809-06:17:42,919 nipype.interface WARNING: +220912-15:22:50,797 nipype.interface WARNING: VTK was not found -210809-06:17:42,919 nipype.interface WARNING: +220912-15:22:50,797 nipype.interface WARNING: tvtk wasn't found ComputeMeshWarp MeshWarpMaths @@ -4697,9 +4731,9 @@ SplineFilter TrackMerge WARNING: Empty - nipype.interfaces.dipy -210809-06:17:47,798 nipype.interface INFO: +220912-15:22:57,747 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate RecoBundles, LabelsBundles, DeterministicTracking. -210809-06:17:47,815 nipype.interface INFO: +220912-15:22:57,761 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate DKIModel, MapmriModel, DTIModel, CSAModel, CSDModel. APMQball DipyBaseInterface @@ -5386,72 +5420,72 @@ WARNING: Empty - nipype.workflows WARNING: Empty - nipype.workflows.dmri WARNING: Empty - nipype.workflows.dmri.camino -210809-06:17:59,828 nipype.interface WARNING: +220912-15:23:10,817 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:18:04,815 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpzMfvnl.png (graph2use=hierarchical, simple_form=True). -210809-06:18:06,529 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpvfoO5a.png (graph2use=hierarchical, simple_form=True). +220912-15:23:15,951 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpBEp8Iz.png (graph2use=hierarchical, simple_form=True). +220912-15:23:17,419 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp_C7CD3.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.connectivity -210809-06:18:07,521 nipype.workflow INFO: - Generated workflow graph: /tmp/tmplMxtuv.png (graph2use=hierarchical, simple_form=True). -210809-06:18:08,675 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp4rVfCj.png (graph2use=hierarchical, simple_form=True). +220912-15:23:18,230 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpdqmLVD.png (graph2use=hierarchical, simple_form=True). +220912-15:23:19,646 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGZcpdf.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dipy -210809-06:18:08,700 nipype.interface WARNING: +220912-15:23:19,665 nipype.interface WARNING: Unable to import [u'dipy']; Denoise interface may fail to run -210809-06:18:09,463 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpnbthbc.png (graph2use=hierarchical, simple_form=True). +220912-15:23:20,372 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpVNBkcV.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dtitk -210809-06:18:10,643 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpJnrnPy.png (graph2use=hierarchical, simple_form=True). -210809-06:18:12,128 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpXNKENv.png (graph2use=hierarchical, simple_form=True). +220912-15:23:21,296 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpqiJtu2.png (graph2use=hierarchical, simple_form=True). +220912-15:23:23,239 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpf7KG9b.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') WARNING: Empty - nipype.workflows.dmri.fsl -210809-06:18:24,162 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpUwU3Ai.png (graph2use=hierarchical, simple_form=True). -210809-06:18:25,315 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpOfQHwS.png (graph2use=hierarchical, simple_form=True). -210809-06:18:27,176 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpaDUY18.png (graph2use=hierarchical, simple_form=True). -210809-06:18:28,281 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpkP07yR.png (graph2use=hierarchical, simple_form=True). -210809-06:18:29,173 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpJZrGOn.png (graph2use=hierarchical, simple_form=True). -210809-06:18:29,841 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpJHnPYi.png (graph2use=hierarchical, simple_form=True). -210809-06:18:31,193 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpvIKFbf.png (graph2use=hierarchical, simple_form=True). -210809-06:18:32,13 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpI2f8ev.png (graph2use=hierarchical, simple_form=True). -210809-06:18:33,515 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpTXebBx.png (graph2use=hierarchical, simple_form=True). -210809-06:18:34,303 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpY6lOG1.png (graph2use=hierarchical, simple_form=True). -210809-06:18:34,894 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpBzEnZv.png (graph2use=hierarchical, simple_form=True). -210809-06:18:35,511 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpApeI6m.png (graph2use=hierarchical, simple_form=True). +220912-15:23:36,395 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpXSf3fV.png (graph2use=hierarchical, simple_form=True). +220912-15:23:39,60 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpzoLqkR.png (graph2use=hierarchical, simple_form=True). +220912-15:23:42,853 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpkk3LbX.png (graph2use=hierarchical, simple_form=True). +220912-15:23:44,200 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpoMQ6gU.png (graph2use=hierarchical, simple_form=True). +220912-15:23:46,71 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGSaCQx.png (graph2use=hierarchical, simple_form=True). +220912-15:23:46,822 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpkAyxJ1.png (graph2use=hierarchical, simple_form=True). +220912-15:23:48,886 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpzmGJjj.png (graph2use=hierarchical, simple_form=True). +220912-15:23:49,681 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpSKnLXe.png (graph2use=hierarchical, simple_form=True). +220912-15:23:51,261 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpqAREQ8.png (graph2use=hierarchical, simple_form=True). +220912-15:23:52,422 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpjCrTcC.png (graph2use=hierarchical, simple_form=True). +220912-15:23:53,328 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpnZE1AQ.png (graph2use=hierarchical, simple_form=True). +220912-15:23:54,14 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp57WFJQ.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') -210809-06:18:37,384 nipype.workflow INFO: - Generated workflow graph: /tmp/tmprTUpsh.png (graph2use=hierarchical, simple_form=True). -210809-06:18:38,149 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpwVldeW.png (graph2use=hierarchical, simple_form=True). -210809-06:18:39,268 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpfR0iFm.png (graph2use=hierarchical, simple_form=True). -210809-06:18:39,984 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp4TjOW9.png (graph2use=hierarchical, simple_form=True). -210809-06:18:40,986 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpNzsnSO.png (graph2use=hierarchical, simple_form=True). -210809-06:18:41,893 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpuOGKgE.png (graph2use=hierarchical, simple_form=True). +220912-15:23:56,434 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpcQZJPw.png (graph2use=hierarchical, simple_form=True). +220912-15:23:56,961 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpq2k8Ae.png (graph2use=hierarchical, simple_form=True). +220912-15:23:58,214 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp_E6GnT.png (graph2use=hierarchical, simple_form=True). +220912-15:23:58,955 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpx9YdPR.png (graph2use=hierarchical, simple_form=True). +220912-15:24:00,89 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpCYN_rb.png (graph2use=hierarchical, simple_form=True). +220912-15:24:00,946 nipype.workflow INFO: + Generated workflow graph: /tmp/tmppRmBr6.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:143: UserWarning: NO FSL found warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:210: UserWarning: NO FSL found @@ -5464,165 +5498,165 @@ warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:550: UserWarning: NO FSL found warn('NO FSL found') -210809-06:18:43,874 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpbvXJhm.png (graph2use=hierarchical, simple_form=True). -210809-06:18:44,602 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp0zswGd.png (graph2use=hierarchical, simple_form=True). -210809-06:18:45,603 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpIfNPbg.png (graph2use=hierarchical, simple_form=True). -210809-06:18:46,294 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpYeUZes.png (graph2use=hierarchical, simple_form=True). -210809-06:18:47,676 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpzRV9fS.png (graph2use=hierarchical, simple_form=True). -210809-06:18:48,654 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpDwtLmL.png (graph2use=hierarchical, simple_form=True). -210809-06:18:50,335 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp_5WWv1.png (graph2use=hierarchical, simple_form=True). -210809-06:18:51,167 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpUyTUHw.png (graph2use=hierarchical, simple_form=True). -210809-06:18:52,42 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp2YTSxN.png (graph2use=hierarchical, simple_form=True). -210809-06:18:52,946 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpoGnXyn.png (graph2use=hierarchical, simple_form=True). +220912-15:24:03,85 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp4jLRAT.png (graph2use=hierarchical, simple_form=True). +220912-15:24:03,927 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpMas4d1.png (graph2use=hierarchical, simple_form=True). +220912-15:24:04,430 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpj4Qpi_.png (graph2use=hierarchical, simple_form=True). +220912-15:24:05,301 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpgl_Lte.png (graph2use=hierarchical, simple_form=True). +220912-15:24:06,634 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpe4O827.png (graph2use=hierarchical, simple_form=True). +220912-15:24:07,403 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp8rE7uX.png (graph2use=hierarchical, simple_form=True). +220912-15:24:08,296 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpZAs2NH.png (graph2use=hierarchical, simple_form=True). +220912-15:24:08,955 nipype.workflow INFO: + Generated workflow graph: /tmp/tmplp7glO.png (graph2use=hierarchical, simple_form=True). +220912-15:24:09,496 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpjwipTu.png (graph2use=hierarchical, simple_form=True). +220912-15:24:10,162 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpyDq4Ob.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.mrtrix -210809-06:18:53,303 nipype.interface WARNING: +220912-15:24:10,380 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:18:53,305 nipype.interface WARNING: +220912-15:24:10,390 nipype.interface WARNING: Unable to import [u'dipy']; TrackDensityMap interface may fail to run -210809-06:18:53,328 nipype.interface WARNING: +220912-15:24:10,398 nipype.interface WARNING: Unable to import [u'cmp']; Parcellate interface may fail to run -210809-06:18:53,336 nipype.interface WARNING: +220912-15:24:10,409 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:18:53,566 nipype.interface WARNING: +220912-15:24:10,474 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:19:05,524 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpwoGFTK.png (graph2use=hierarchical, simple_form=True). -210809-06:19:05,625 nipype.interface WARNING: +220912-15:24:17,528 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpk0drmI.png (graph2use=hierarchical, simple_form=True). +220912-15:24:17,582 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:19:07,875 nipype.workflow INFO: - Generated workflow graph: /tmp/tmprbsPjg.png (graph2use=hierarchical, simple_form=True). +220912-15:24:19,155 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpk1bx0e.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri WARNING: Empty - nipype.workflows.fmri.fsl -210809-06:19:09,382 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpLZyXBU.png (graph2use=hierarchical, simple_form=True). -210809-06:19:10,421 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpi5FCsZ.png (graph2use=hierarchical, simple_form=True). -210809-06:19:11,297 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpUD8lT1.png (graph2use=hierarchical, simple_form=True). -210809-06:19:14,722 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpMk9fy8.png (graph2use=hierarchical, simple_form=True). -210809-06:19:16,185 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpFuLA_l.png (graph2use=hierarchical, simple_form=True). -210809-06:19:17,812 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpcKPU1S.png (graph2use=hierarchical, simple_form=True). -210809-06:19:18,900 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpYVobWI.png (graph2use=hierarchical, simple_form=True). +220912-15:24:19,954 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpqwsgVj.png (graph2use=hierarchical, simple_form=True). +220912-15:24:20,790 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp1jiw1G.png (graph2use=hierarchical, simple_form=True). +220912-15:24:21,353 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpHduIsB.png (graph2use=hierarchical, simple_form=True). +220912-15:24:23,463 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpOy0nSa.png (graph2use=hierarchical, simple_form=True). +220912-15:24:24,721 nipype.workflow INFO: + Generated workflow graph: /tmp/tmptRgKn8.png (graph2use=hierarchical, simple_form=True). +220912-15:24:25,864 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpekoM32.png (graph2use=hierarchical, simple_form=True). +220912-15:24:26,322 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpcgNUCf.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri.spm WARNING: Empty - nipype.workflows.fmri.spm.estimate -210809-06:19:19,29 nipype.workflow CRITICAL: +220912-15:24:26,363 nipype.workflow CRITICAL: SPM not found -210809-06:19:19,586 nipype.workflow CRITICAL: +220912-15:24:26,559 nipype.workflow CRITICAL: SPM not found -210809-06:19:20,736 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpJI5_bm.png (graph2use=hierarchical, simple_form=True). -210809-06:19:22,11 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpXK82qm.png (graph2use=hierarchical, simple_form=True). -210809-06:19:23,126 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpoc3U0A.png (graph2use=hierarchical, simple_form=True). +220912-15:24:27,281 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp0DXL_O.png (graph2use=hierarchical, simple_form=True). +220912-15:24:27,987 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpCjPKoe.png (graph2use=hierarchical, simple_form=True). +220912-15:24:28,438 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpnIAwU8.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.graph WARNING: Empty - nipype.workflows.misc WARNING: Empty - nipype.workflows.rsfmri WARNING: Empty - nipype.workflows.rsfmri.fsl -210809-06:19:24,305 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpKJ8t4Z.png (graph2use=hierarchical, simple_form=True). -210809-06:19:25,593 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpddKAaP.png (graph2use=hierarchical, simple_form=True). +220912-15:24:29,324 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGqagJd.png (graph2use=hierarchical, simple_form=True). +220912-15:24:30,35 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpQrn5BH.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri WARNING: Empty - nipype.workflows.smri.ants -210809-06:19:27,460 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpCyGJxs.png (graph2use=hierarchical, simple_form=True). -210809-06:19:29,443 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp2seCA1.png (graph2use=hierarchical, simple_form=True). +220912-15:24:31,200 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpN4oVZg.png (graph2use=hierarchical, simple_form=True). +220912-15:24:32,107 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpwwQ3kX.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.freesurfer WARNING: Empty - nipype.workflows.smri.freesurfer.autorecon3 WARNING: Empty - nipype.workflows.smri.freesurfer.ba_maps -210809-06:19:46,488 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpG30PHS.png (graph2use=hierarchical, simple_form=True). -210809-06:19:46,509 nipype.workflow INFO: +220912-15:24:38,309 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpux3Qp4.png (graph2use=hierarchical, simple_form=True). +220912-15:24:38,316 nipype.workflow INFO: FreeSurfer Version: 5.3 -210809-06:20:40,440 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpVdLsK2.png (graph2use=hierarchical, simple_form=True). -210809-06:20:41,650 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpjPVfaD.png (graph2use=hierarchical, simple_form=True). +220912-15:25:16,138 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp5m8Ysb.png (graph2use=hierarchical, simple_form=True). +220912-15:25:17,368 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpxAO0jO.png (graph2use=hierarchical, simple_form=True). FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow -210809-06:20:42,773 nipype.workflow INFO: - Generated workflow graph: /tmp/tmppETAUj.png (graph2use=hierarchical, simple_form=True). -210809-06:20:43,708 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpH9o1qb.png (graph2use=hierarchical, simple_form=True). -210809-06:20:44,632 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpp35l4h.png (graph2use=hierarchical, simple_form=True). +220912-15:25:18,242 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpzDbaGQ.png (graph2use=hierarchical, simple_form=True). +220912-15:25:18,693 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpgUGknT.png (graph2use=hierarchical, simple_form=True). +220912-15:25:19,149 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpbwcYiT.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.niftyreg -210809-06:20:44,676 nipype.interface WARNING: +220912-15:25:19,162 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,686 nipype.interface WARNING: +220912-15:25:19,166 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,750 nipype.interface WARNING: +220912-15:25:19,183 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,764 nipype.interface WARNING: +220912-15:25:19,187 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,834 nipype.interface WARNING: +220912-15:25:19,205 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,843 nipype.interface WARNING: +220912-15:25:19,209 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,908 nipype.interface WARNING: +220912-15:25:19,228 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,917 nipype.interface WARNING: +220912-15:25:19,231 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,987 nipype.interface WARNING: +220912-15:25:19,251 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:44,991 nipype.interface WARNING: +220912-15:25:19,259 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,24 nipype.interface WARNING: +220912-15:25:19,296 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,28 nipype.interface WARNING: +220912-15:25:19,299 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,82 nipype.interface WARNING: +220912-15:25:19,318 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,88 nipype.interface WARNING: +220912-15:25:19,323 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,152 nipype.interface WARNING: +220912-15:25:19,355 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,159 nipype.interface WARNING: +220912-15:25:19,360 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,209 nipype.interface WARNING: +220912-15:25:19,392 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,216 nipype.interface WARNING: +220912-15:25:19,397 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,263 nipype.interface WARNING: +220912-15:25:19,429 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,269 nipype.interface WARNING: +220912-15:25:19,434 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,317 nipype.interface WARNING: +220912-15:25:19,466 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,326 nipype.interface WARNING: +220912-15:25:19,473 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,381 nipype.interface WARNING: +220912-15:25:19,510 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,385 nipype.interface WARNING: +220912-15:25:19,514 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,401 nipype.interface WARNING: +220912-15:25:19,524 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:45,408 nipype.interface WARNING: +220912-15:25:19,529 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:20:46,770 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpw7Fv4D.png (graph2use=hierarchical, simple_form=True). -210809-06:20:47,623 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp7KUJSr.png (graph2use=hierarchical, simple_form=True). -210809-06:20:48,480 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpRDJTLl.png (graph2use=hierarchical, simple_form=True). +220912-15:25:20,339 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpP4lONy.png (graph2use=hierarchical, simple_form=True). +220912-15:25:20,909 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpfrohKi.png (graph2use=hierarchical, simple_form=True). +220912-15:25:21,422 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp27NNj9.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.warp 203 files written making output directory... @@ -5642,19 +5676,19 @@ warn("Unknown section %s" % key) reading sources... [ 2%] api/generated/nipype.pipeline.engine.workflows reading sources... [ 2%] api/generated/nipype.sphinxext.plot_workflow -210809-06:21:12,604 nipype.interface INFO: +220912-15:25:34,484 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate RecoBundles, LabelsBundles, DeterministicTracking. -210809-06:21:12,614 nipype.interface INFO: +220912-15:25:34,494 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate DKIModel, MapmriModel, DTIModel, CSAModel, CSDModel. /build/nipype-1.1.8/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed warnings.warn('cmp not installed') -210809-06:21:12,750 nipype.interface WARNING: +220912-15:25:34,584 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:21:25,323 nipype.workflow INFO: +220912-15:25:43,804 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/api/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.png (graph2use=flat, simple_form=False). -210809-06:21:28,584 nipype.workflow INFO: +220912-15:25:46,306 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/api/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.svg (graph2use=flat, simple_form=False). -210809-06:21:31,576 nipype.workflow INFO: +220912-15:25:48,977 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/api/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.pdf (graph2use=flat, simple_form=False). /usr/lib/python2.7/dist-packages/numpydoc/docscrape.py:139: UserWarning: Unknown section :mod:`nipype.sphinxext.plot_workflow` -- Workflow Plotting Extension warn("Unknown section %s" % key) @@ -5892,13 +5926,13 @@ reading sources... [ 75%] interfaces/generated/nipype.interfaces.vtkbase reading sources... [ 75%] interfaces/generated/nipype.pkg_info reading sources... [ 75%] interfaces/generated/nipype.sphinxext.plot_workflow -210809-06:22:04,17 nipype.interface WARNING: +220912-15:26:16,823 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:22:14,533 nipype.workflow INFO: +220912-15:26:28,455 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/interfaces/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.png (graph2use=flat, simple_form=False). -210809-06:22:18,433 nipype.workflow INFO: +220912-15:26:31,377 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/interfaces/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.svg (graph2use=flat, simple_form=False). -210809-06:22:21,380 nipype.workflow INFO: +220912-15:26:35,397 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/interfaces/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.pdf (graph2use=flat, simple_form=False). reading sources... [ 75%] interfaces/generated/nipype.workflows.data reading sources... [ 76%] interfaces/generated/workflows.dmri @@ -7491,9 +7525,9 @@ TCompCor TSNR ICC -210809-06:24:48,850 nipype.interface WARNING: +220912-15:28:42,416 nipype.interface WARNING: VTK was not found -210809-06:24:48,851 nipype.interface WARNING: +220912-15:28:42,416 nipype.interface WARNING: tvtk wasn't found ComputeMeshWarp MeshWarpMaths @@ -7748,9 +7782,9 @@ SplineFilter TrackMerge WARNING: Empty - nipype.interfaces.dipy -210809-06:24:59,344 nipype.interface INFO: +220912-15:28:45,603 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate RecoBundles, LabelsBundles, DeterministicTracking. -210809-06:24:59,351 nipype.interface INFO: +220912-15:28:45,617 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate DKIModel, MapmriModel, DTIModel, CSAModel, CSDModel. APMQball DipyBaseInterface @@ -8437,72 +8471,72 @@ WARNING: Empty - nipype.workflows.dmri.camino /build/nipype-1.1.8/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed warnings.warn('cmp not installed') -210809-06:25:15,738 nipype.interface WARNING: +220912-15:28:56,210 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:25:20,196 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpQUZ88v.png (graph2use=hierarchical, simple_form=True). -210809-06:25:21,977 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp70kl_q.png (graph2use=hierarchical, simple_form=True). +220912-15:28:58,398 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpAZX0Sr.png (graph2use=hierarchical, simple_form=True). +220912-15:29:00,410 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpm8zCLz.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.connectivity -210809-06:25:23,916 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpY1iROf.png (graph2use=hierarchical, simple_form=True). -210809-06:25:25,474 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpvvO5YW.png (graph2use=hierarchical, simple_form=True). +220912-15:29:01,251 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpiP3q_G.png (graph2use=hierarchical, simple_form=True). +220912-15:29:02,297 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp15A9de.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dipy -210809-06:25:25,492 nipype.interface WARNING: +220912-15:29:02,508 nipype.interface WARNING: Unable to import [u'dipy']; Denoise interface may fail to run -210809-06:25:26,655 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpGfY1VT.png (graph2use=hierarchical, simple_form=True). +220912-15:29:03,820 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp3xEFev.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dtitk -210809-06:25:27,963 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpjslvlH.png (graph2use=hierarchical, simple_form=True). -210809-06:25:29,580 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp437nHN.png (graph2use=hierarchical, simple_form=True). +220912-15:29:05,189 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpTfMri0.png (graph2use=hierarchical, simple_form=True). +220912-15:29:05,965 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpCAcxiM.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.fsl /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') -210809-06:25:37,388 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp2JjE8j.png (graph2use=hierarchical, simple_form=True). -210809-06:25:39,129 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpRoboqz.png (graph2use=hierarchical, simple_form=True). -210809-06:25:41,862 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpB8uq0a.png (graph2use=hierarchical, simple_form=True). -210809-06:25:43,624 nipype.workflow INFO: - Generated workflow graph: /tmp/tmphgF6AQ.png (graph2use=hierarchical, simple_form=True). -210809-06:25:45,193 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpapjmr3.png (graph2use=hierarchical, simple_form=True). -210809-06:25:46,662 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpQmqsX4.png (graph2use=hierarchical, simple_form=True). -210809-06:25:48,930 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpE_c7XZ.png (graph2use=hierarchical, simple_form=True). -210809-06:25:50,503 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpBb9dVx.png (graph2use=hierarchical, simple_form=True). -210809-06:25:52,869 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp1HGhAp.png (graph2use=hierarchical, simple_form=True). -210809-06:25:54,347 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpntfS3x.png (graph2use=hierarchical, simple_form=True). -210809-06:25:55,705 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpFBGs7e.png (graph2use=hierarchical, simple_form=True). -210809-06:25:56,946 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpCcizNM.png (graph2use=hierarchical, simple_form=True). +220912-15:29:12,967 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpfzDMJD.png (graph2use=hierarchical, simple_form=True). +220912-15:29:13,788 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp9bUJkc.png (graph2use=hierarchical, simple_form=True). +220912-15:29:15,916 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpyZgWVH.png (graph2use=hierarchical, simple_form=True). +220912-15:29:16,887 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpcPFD6r.png (graph2use=hierarchical, simple_form=True). +220912-15:29:17,399 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpgOoM_I.png (graph2use=hierarchical, simple_form=True). +220912-15:29:18,16 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpCWhtpA.png (graph2use=hierarchical, simple_form=True). +220912-15:29:18,895 nipype.workflow INFO: + Generated workflow graph: /tmp/tmprHCPAh.png (graph2use=hierarchical, simple_form=True). +220912-15:29:19,955 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGTOrDC.png (graph2use=hierarchical, simple_form=True). +220912-15:29:20,836 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpnY3WHX.png (graph2use=hierarchical, simple_form=True). +220912-15:29:21,877 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpVUBU86.png (graph2use=hierarchical, simple_form=True). +220912-15:29:22,635 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpHh3dWf.png (graph2use=hierarchical, simple_form=True). +220912-15:29:23,893 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpAz5Kik.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') -210809-06:26:00,0 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpZTis7P.png (graph2use=hierarchical, simple_form=True). -210809-06:26:01,426 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpNGYZqZ.png (graph2use=hierarchical, simple_form=True). -210809-06:26:03,52 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpERMkrP.png (graph2use=hierarchical, simple_form=True). -210809-06:26:04,408 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpJ1GId9.png (graph2use=hierarchical, simple_form=True). -210809-06:26:05,815 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpjfMgmE.png (graph2use=hierarchical, simple_form=True). -210809-06:26:07,284 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp7d70Ei.png (graph2use=hierarchical, simple_form=True). +220912-15:29:25,486 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpbMIbyl.png (graph2use=hierarchical, simple_form=True). +220912-15:29:26,508 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpRlHpNS.png (graph2use=hierarchical, simple_form=True). +220912-15:29:27,405 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpeGZptU.png (graph2use=hierarchical, simple_form=True). +220912-15:29:28,28 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp8PkXN3.png (graph2use=hierarchical, simple_form=True). +220912-15:29:29,66 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpj0UutS.png (graph2use=hierarchical, simple_form=True). +220912-15:29:29,654 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpXvgLaR.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:143: UserWarning: NO FSL found warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:210: UserWarning: NO FSL found @@ -8515,165 +8549,165 @@ warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:550: UserWarning: NO FSL found warn('NO FSL found') -210809-06:26:09,436 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpWlbV2M.png (graph2use=hierarchical, simple_form=True). -210809-06:26:10,740 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpYsu3NM.png (graph2use=hierarchical, simple_form=True). -210809-06:26:12,256 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpeCoJI8.png (graph2use=hierarchical, simple_form=True). -210809-06:26:13,630 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpioQmMT.png (graph2use=hierarchical, simple_form=True). -210809-06:26:15,249 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpvY4cpJ.png (graph2use=hierarchical, simple_form=True). -210809-06:26:16,609 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpb5CnPo.png (graph2use=hierarchical, simple_form=True). -210809-06:26:18,527 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpIH7fMm.png (graph2use=hierarchical, simple_form=True). -210809-06:26:19,945 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpaz7cta.png (graph2use=hierarchical, simple_form=True). -210809-06:26:21,379 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpGHXPbl.png (graph2use=hierarchical, simple_form=True). -210809-06:26:22,774 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpbbRwgC.png (graph2use=hierarchical, simple_form=True). +220912-15:29:30,626 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpf3O8jI.png (graph2use=hierarchical, simple_form=True). +220912-15:29:31,546 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpEy5W4C.png (graph2use=hierarchical, simple_form=True). +220912-15:29:32,325 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp0AjlOZ.png (graph2use=hierarchical, simple_form=True). +220912-15:29:33,270 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpgej5dh.png (graph2use=hierarchical, simple_form=True). +220912-15:29:34,889 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpLXYrlw.png (graph2use=hierarchical, simple_form=True). +220912-15:29:36,440 nipype.workflow INFO: + Generated workflow graph: /tmp/tmptn57hZ.png (graph2use=hierarchical, simple_form=True). +220912-15:29:38,380 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp4jVQMt.png (graph2use=hierarchical, simple_form=True). +220912-15:29:39,677 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpDM9Stx.png (graph2use=hierarchical, simple_form=True). +220912-15:29:40,741 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpT385w_.png (graph2use=hierarchical, simple_form=True). +220912-15:29:41,884 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpJWNpBT.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.mrtrix -210809-06:26:24,49 nipype.interface WARNING: +220912-15:29:42,150 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:26:24,297 nipype.interface WARNING: +220912-15:29:42,153 nipype.interface WARNING: Unable to import [u'dipy']; TrackDensityMap interface may fail to run -210809-06:26:24,805 nipype.interface WARNING: +220912-15:29:42,160 nipype.interface WARNING: Unable to import [u'cmp']; Parcellate interface may fail to run -210809-06:26:25,41 nipype.interface WARNING: +220912-15:29:42,165 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:26:25,445 nipype.interface WARNING: +220912-15:29:42,231 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:26:31,364 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpcqhrU5.png (graph2use=hierarchical, simple_form=True). -210809-06:26:31,705 nipype.interface WARNING: +220912-15:29:46,628 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpaDKAtq.png (graph2use=hierarchical, simple_form=True). +220912-15:29:46,873 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:26:34,79 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp16bvEP.png (graph2use=hierarchical, simple_form=True). +220912-15:29:48,426 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpS8QCTC.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri WARNING: Empty - nipype.workflows.fmri.fsl -210809-06:26:36,586 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp13C326.png (graph2use=hierarchical, simple_form=True). -210809-06:26:38,119 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpeXR4ov.png (graph2use=hierarchical, simple_form=True). -210809-06:26:39,478 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpxixim8.png (graph2use=hierarchical, simple_form=True). -210809-06:26:43,746 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpDaSvmG.png (graph2use=hierarchical, simple_form=True). -210809-06:26:45,887 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp0P2Mm_.png (graph2use=hierarchical, simple_form=True). -210809-06:26:48,154 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpcJnmRm.png (graph2use=hierarchical, simple_form=True). -210809-06:26:49,714 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp3eML09.png (graph2use=hierarchical, simple_form=True). +220912-15:29:49,379 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpaTYxVX.png (graph2use=hierarchical, simple_form=True). +220912-15:29:49,924 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp39PBOP.png (graph2use=hierarchical, simple_form=True). +220912-15:29:50,800 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp08ulSN.png (graph2use=hierarchical, simple_form=True). +220912-15:29:53,343 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpfjZCmk.png (graph2use=hierarchical, simple_form=True). +220912-15:29:55,19 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpyL5PJd.png (graph2use=hierarchical, simple_form=True). +220912-15:29:57,102 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp7b_HpX.png (graph2use=hierarchical, simple_form=True). +220912-15:29:58,343 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGI62RX.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri.spm WARNING: Empty - nipype.workflows.fmri.spm.estimate -210809-06:26:50,263 nipype.workflow CRITICAL: +220912-15:29:58,930 nipype.workflow CRITICAL: SPM not found -210809-06:26:50,783 nipype.workflow CRITICAL: +220912-15:29:59,290 nipype.workflow CRITICAL: SPM not found -210809-06:26:51,924 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpc_dcDF.png (graph2use=hierarchical, simple_form=True). -210809-06:26:53,460 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpTNEgF3.png (graph2use=hierarchical, simple_form=True). -210809-06:26:54,847 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpg8DH55.png (graph2use=hierarchical, simple_form=True). +220912-15:30:00,147 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpiSjgpC.png (graph2use=hierarchical, simple_form=True). +220912-15:30:01,495 nipype.workflow INFO: + Generated workflow graph: /tmp/tmppUXVok.png (graph2use=hierarchical, simple_form=True). +220912-15:30:02,44 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpPjxHNj.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.graph WARNING: Empty - nipype.workflows.misc WARNING: Empty - nipype.workflows.rsfmri WARNING: Empty - nipype.workflows.rsfmri.fsl -210809-06:26:56,907 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpNaHlO5.png (graph2use=hierarchical, simple_form=True). -210809-06:26:58,454 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpMdsYy7.png (graph2use=hierarchical, simple_form=True). +220912-15:30:03,587 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp8JFVdB.png (graph2use=hierarchical, simple_form=True). +220912-15:30:05,44 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpaAyLH8.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri WARNING: Empty - nipype.workflows.smri.ants -210809-06:27:00,686 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp1rroDX.png (graph2use=hierarchical, simple_form=True). -210809-06:27:02,930 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpxbb6hk.png (graph2use=hierarchical, simple_form=True). +220912-15:30:06,34 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpgGTaJe.png (graph2use=hierarchical, simple_form=True). +220912-15:30:07,785 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpiCDBlT.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.freesurfer WARNING: Empty - nipype.workflows.smri.freesurfer.autorecon3 WARNING: Empty - nipype.workflows.smri.freesurfer.ba_maps -210809-06:27:12,702 nipype.workflow INFO: - Generated workflow graph: /tmp/tmppkdYYc.png (graph2use=hierarchical, simple_form=True). -210809-06:27:12,770 nipype.workflow INFO: +220912-15:30:12,863 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpsgXRKB.png (graph2use=hierarchical, simple_form=True). +220912-15:30:12,869 nipype.workflow INFO: FreeSurfer Version: 5.3 -210809-06:28:05,926 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpPZzsgT.png (graph2use=hierarchical, simple_form=True). -210809-06:28:07,914 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpDbhHHv.png (graph2use=hierarchical, simple_form=True). +220912-15:30:40,187 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpWdwkpW.png (graph2use=hierarchical, simple_form=True). +220912-15:30:40,792 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp2pZCyi.png (graph2use=hierarchical, simple_form=True). FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow -210809-06:28:09,806 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpciiGkG.png (graph2use=hierarchical, simple_form=True). -210809-06:28:11,442 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpuRzx5W.png (graph2use=hierarchical, simple_form=True). -210809-06:28:12,922 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpT1Ej7S.png (graph2use=hierarchical, simple_form=True). +220912-15:30:41,268 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpQ0qWUa.png (graph2use=hierarchical, simple_form=True). +220912-15:30:41,672 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpBVtOmf.png (graph2use=hierarchical, simple_form=True). +220912-15:30:42,96 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpfAyhWl.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.niftyreg -210809-06:28:13,214 nipype.interface WARNING: +220912-15:30:42,114 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,224 nipype.interface WARNING: +220912-15:30:42,118 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,300 nipype.interface WARNING: +220912-15:30:42,134 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,313 nipype.interface WARNING: +220912-15:30:42,137 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,391 nipype.interface WARNING: +220912-15:30:42,155 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,401 nipype.interface WARNING: +220912-15:30:42,158 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,466 nipype.interface WARNING: +220912-15:30:42,175 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,470 nipype.interface WARNING: +220912-15:30:42,178 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,532 nipype.interface WARNING: +220912-15:30:42,197 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,536 nipype.interface WARNING: +220912-15:30:42,199 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,599 nipype.interface WARNING: +220912-15:30:42,218 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,611 nipype.interface WARNING: +220912-15:30:42,221 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,664 nipype.interface WARNING: +220912-15:30:42,239 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,679 nipype.interface WARNING: +220912-15:30:42,243 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,776 nipype.interface WARNING: +220912-15:30:42,273 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,792 nipype.interface WARNING: +220912-15:30:42,278 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,911 nipype.interface WARNING: +220912-15:30:42,308 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:13,936 nipype.interface WARNING: +220912-15:30:42,312 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,22 nipype.interface WARNING: +220912-15:30:42,343 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,29 nipype.interface WARNING: +220912-15:30:42,347 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,76 nipype.interface WARNING: +220912-15:30:42,378 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,85 nipype.interface WARNING: +220912-15:30:42,384 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,140 nipype.interface WARNING: +220912-15:30:42,420 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,145 nipype.interface WARNING: +220912-15:30:42,423 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,161 nipype.interface WARNING: +220912-15:30:42,433 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:14,167 nipype.interface WARNING: +220912-15:30:42,437 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:28:16,540 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp85ohHe.png (graph2use=hierarchical, simple_form=True). -210809-06:28:18,142 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpyp1lUK.png (graph2use=hierarchical, simple_form=True). -210809-06:28:19,629 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpY3ZeTj.png (graph2use=hierarchical, simple_form=True). +220912-15:30:43,231 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpu9Lral.png (graph2use=hierarchical, simple_form=True). +220912-15:30:43,615 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpq3nmqi.png (graph2use=hierarchical, simple_form=True). +220912-15:30:43,993 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpKvyN5w.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.warp 203 files written Build API docs finished. @@ -8696,9 +8730,9 @@ TCompCor TSNR ICC -210809-06:28:48,519 nipype.interface WARNING: +220912-15:30:58,967 nipype.interface WARNING: VTK was not found -210809-06:28:48,519 nipype.interface WARNING: +220912-15:30:58,967 nipype.interface WARNING: tvtk wasn't found ComputeMeshWarp MeshWarpMaths @@ -8953,9 +8987,9 @@ SplineFilter TrackMerge WARNING: Empty - nipype.interfaces.dipy -210809-06:28:54,923 nipype.interface INFO: +220912-15:31:01,571 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate RecoBundles, LabelsBundles, DeterministicTracking. -210809-06:28:54,939 nipype.interface INFO: +220912-15:31:01,579 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate DKIModel, MapmriModel, DTIModel, CSAModel, CSDModel. APMQball DipyBaseInterface @@ -9642,72 +9676,72 @@ WARNING: Empty - nipype.workflows WARNING: Empty - nipype.workflows.dmri WARNING: Empty - nipype.workflows.dmri.camino -210809-06:29:07,234 nipype.interface WARNING: +220912-15:31:06,701 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:29:11,908 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpLY24oC.png (graph2use=hierarchical, simple_form=True). -210809-06:29:13,956 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpUge2X3.png (graph2use=hierarchical, simple_form=True). +220912-15:31:08,382 nipype.workflow INFO: + Generated workflow graph: /tmp/tmprNFXuu.png (graph2use=hierarchical, simple_form=True). +220912-15:31:09,14 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpG6k8n5.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.connectivity -210809-06:29:15,522 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpog4B1r.png (graph2use=hierarchical, simple_form=True). -210809-06:29:16,956 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp0wW0FK.png (graph2use=hierarchical, simple_form=True). +220912-15:31:09,416 nipype.workflow INFO: + Generated workflow graph: /tmp/tmproKuL7.png (graph2use=hierarchical, simple_form=True). +220912-15:31:09,785 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpdWXpej.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dipy -210809-06:29:17,369 nipype.interface WARNING: +220912-15:31:09,796 nipype.interface WARNING: Unable to import [u'dipy']; Denoise interface may fail to run -210809-06:29:18,716 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpw6DJJo.png (graph2use=hierarchical, simple_form=True). +220912-15:31:10,86 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpRhLPmp.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.dtitk -210809-06:29:20,391 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpcnXmjE.png (graph2use=hierarchical, simple_form=True). -210809-06:29:22,155 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpynLzJD.png (graph2use=hierarchical, simple_form=True). +220912-15:31:10,443 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp87FDGm.png (graph2use=hierarchical, simple_form=True). +220912-15:31:10,906 nipype.workflow INFO: + Generated workflow graph: /tmp/tmphfS54X.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') WARNING: Empty - nipype.workflows.dmri.fsl -210809-06:29:31,716 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp47jbM0.png (graph2use=hierarchical, simple_form=True). -210809-06:29:33,417 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpJYsJg5.png (graph2use=hierarchical, simple_form=True). -210809-06:29:36,7 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp7cBN9s.png (graph2use=hierarchical, simple_form=True). -210809-06:29:37,824 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpjUxyhH.png (graph2use=hierarchical, simple_form=True). -210809-06:29:39,106 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpj3BUYh.png (graph2use=hierarchical, simple_form=True). -210809-06:29:40,258 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpDshhD5.png (graph2use=hierarchical, simple_form=True). -210809-06:29:41,647 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpdxwx77.png (graph2use=hierarchical, simple_form=True). -210809-06:29:43,39 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpRkq0b_.png (graph2use=hierarchical, simple_form=True). -210809-06:29:45,218 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpLGRN2g.png (graph2use=hierarchical, simple_form=True). -210809-06:29:46,685 nipype.workflow INFO: - Generated workflow graph: /tmp/tmplNoyhU.png (graph2use=hierarchical, simple_form=True). -210809-06:29:47,979 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpwRWqQN.png (graph2use=hierarchical, simple_form=True). -210809-06:29:49,286 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp92U1aE.png (graph2use=hierarchical, simple_form=True). +220912-15:31:14,926 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp2siNK_.png (graph2use=hierarchical, simple_form=True). +220912-15:31:15,429 nipype.workflow INFO: + Generated workflow graph: /tmp/tmptpCJub.png (graph2use=hierarchical, simple_form=True). +220912-15:31:16,726 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpx97pvT.png (graph2use=hierarchical, simple_form=True). +220912-15:31:17,233 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp5NwX5S.png (graph2use=hierarchical, simple_form=True). +220912-15:31:17,647 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp6EGj2u.png (graph2use=hierarchical, simple_form=True). +220912-15:31:17,985 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpju6Ry5.png (graph2use=hierarchical, simple_form=True). +220912-15:31:18,645 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpm2EK_1.png (graph2use=hierarchical, simple_form=True). +220912-15:31:19,24 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpA_59tk.png (graph2use=hierarchical, simple_form=True). +220912-15:31:19,642 nipype.workflow INFO: + Generated workflow graph: /tmp/tmprs55VI.png (graph2use=hierarchical, simple_form=True). +220912-15:31:20,15 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpbMwgNr.png (graph2use=hierarchical, simple_form=True). +220912-15:31:20,309 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpAhEuTC.png (graph2use=hierarchical, simple_form=True). +220912-15:31:20,600 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpLS7yFE.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') /build/nipype-1.1.8/nipype/interfaces/fsl/preprocess.py:1887: UserWarning: This has not been fully tested. Please report any failures. warn('This has not been fully tested. Please report any failures.') -210809-06:29:52,310 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpYuTRHd.png (graph2use=hierarchical, simple_form=True). -210809-06:29:53,554 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpr4GqTx.png (graph2use=hierarchical, simple_form=True). -210809-06:29:55,220 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpQs3xec.png (graph2use=hierarchical, simple_form=True). -210809-06:29:56,565 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpLsWPHW.png (graph2use=hierarchical, simple_form=True). -210809-06:29:58,57 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpzO5GKG.png (graph2use=hierarchical, simple_form=True). -210809-06:29:59,626 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp0wVoVk.png (graph2use=hierarchical, simple_form=True). +220912-15:31:21,540 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpCbgMU4.png (graph2use=hierarchical, simple_form=True). +220912-15:31:21,844 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpJ1wjAE.png (graph2use=hierarchical, simple_form=True). +220912-15:31:22,267 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpthDTVo.png (graph2use=hierarchical, simple_form=True). +220912-15:31:22,574 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp8jBXFb.png (graph2use=hierarchical, simple_form=True). +220912-15:31:22,942 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpfwJsf_.png (graph2use=hierarchical, simple_form=True). +220912-15:31:23,264 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpNcSTP_.png (graph2use=hierarchical, simple_form=True). /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:143: UserWarning: NO FSL found warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:210: UserWarning: NO FSL found @@ -9720,165 +9754,165 @@ warn('NO FSL found') /build/nipype-1.1.8/nipype/workflows/dmri/fsl/tbss.py:550: UserWarning: NO FSL found warn('NO FSL found') -210809-06:30:02,118 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpzFvpB1.png (graph2use=hierarchical, simple_form=True). -210809-06:30:03,380 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpXY1vi8.png (graph2use=hierarchical, simple_form=True). -210809-06:30:04,476 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpea_BfJ.png (graph2use=hierarchical, simple_form=True). -210809-06:30:05,742 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpwcH08X.png (graph2use=hierarchical, simple_form=True). -210809-06:30:07,753 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpS3grv5.png (graph2use=hierarchical, simple_form=True). -210809-06:30:09,91 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp1yx3Zz.png (graph2use=hierarchical, simple_form=True). -210809-06:30:11,125 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpy5oGta.png (graph2use=hierarchical, simple_form=True). -210809-06:30:12,425 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpdTl1BL.png (graph2use=hierarchical, simple_form=True). -210809-06:30:13,880 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpM9oyOp.png (graph2use=hierarchical, simple_form=True). -210809-06:30:14,843 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpcXTecR.png (graph2use=hierarchical, simple_form=True). +220912-15:31:23,881 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpTBwGe2.png (graph2use=hierarchical, simple_form=True). +220912-15:31:24,161 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpeJ8xvX.png (graph2use=hierarchical, simple_form=True). +220912-15:31:24,479 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpAAoV0O.png (graph2use=hierarchical, simple_form=True). +220912-15:31:24,768 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpAyrV1h.png (graph2use=hierarchical, simple_form=True). +220912-15:31:25,200 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp80Yb5l.png (graph2use=hierarchical, simple_form=True). +220912-15:31:25,490 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpe91ra1.png (graph2use=hierarchical, simple_form=True). +220912-15:31:25,939 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpM56_fC.png (graph2use=hierarchical, simple_form=True). +220912-15:31:26,253 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp2jVjdr.png (graph2use=hierarchical, simple_form=True). +220912-15:31:26,578 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp1vUDpG.png (graph2use=hierarchical, simple_form=True). +220912-15:31:26,878 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpRqQfPV.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.dmri.mrtrix -210809-06:30:16,97 nipype.interface WARNING: +220912-15:31:26,981 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:30:16,341 nipype.interface WARNING: +220912-15:31:26,985 nipype.interface WARNING: Unable to import [u'dipy']; TrackDensityMap interface may fail to run -210809-06:30:16,857 nipype.interface WARNING: +220912-15:31:26,993 nipype.interface WARNING: Unable to import [u'cmp']; Parcellate interface may fail to run -210809-06:30:17,105 nipype.interface WARNING: +220912-15:31:26,998 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:30:17,497 nipype.interface WARNING: +220912-15:31:27,58 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:30:25,25 nipype.workflow INFO: - Generated workflow graph: /tmp/tmplXO5tR.png (graph2use=hierarchical, simple_form=True). -210809-06:30:25,91 nipype.interface WARNING: +220912-15:31:30,779 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpAWsK6u.png (graph2use=hierarchical, simple_form=True). +220912-15:31:30,803 nipype.interface WARNING: Unable to import [u'dipy']; MRTrix2TrackVis interface may fail to run -210809-06:30:27,123 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpi7ZhGo.png (graph2use=hierarchical, simple_form=True). +220912-15:31:31,452 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpWggb2g.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri WARNING: Empty - nipype.workflows.fmri.fsl -210809-06:30:28,586 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpEqe7Sb.png (graph2use=hierarchical, simple_form=True). -210809-06:30:29,932 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpaHFy5c.png (graph2use=hierarchical, simple_form=True). -210809-06:30:31,238 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpLwezBs.png (graph2use=hierarchical, simple_form=True). -210809-06:30:35,280 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpKFCDtN.png (graph2use=hierarchical, simple_form=True). -210809-06:30:37,296 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpQJPZKZ.png (graph2use=hierarchical, simple_form=True). -210809-06:30:39,449 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpyjUT2G.png (graph2use=hierarchical, simple_form=True). -210809-06:30:40,898 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp4cmbh8.png (graph2use=hierarchical, simple_form=True). +220912-15:31:31,847 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpaGPqno.png (graph2use=hierarchical, simple_form=True). +220912-15:31:32,172 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpNbBj39.png (graph2use=hierarchical, simple_form=True). +220912-15:31:32,444 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpTObNpg.png (graph2use=hierarchical, simple_form=True). +220912-15:31:33,418 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpXc1ZjL.png (graph2use=hierarchical, simple_form=True). +220912-15:31:33,935 nipype.workflow INFO: + Generated workflow graph: /tmp/tmptaz6bC.png (graph2use=hierarchical, simple_form=True). +220912-15:31:34,463 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpRisENs.png (graph2use=hierarchical, simple_form=True). +220912-15:31:34,819 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpUoq8II.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.fmri.spm WARNING: Empty - nipype.workflows.fmri.spm.estimate -210809-06:30:41,519 nipype.workflow CRITICAL: +220912-15:31:34,853 nipype.workflow CRITICAL: SPM not found -210809-06:30:41,970 nipype.workflow CRITICAL: +220912-15:31:34,976 nipype.workflow CRITICAL: SPM not found -210809-06:30:42,996 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpYthGEZ.png (graph2use=hierarchical, simple_form=True). -210809-06:30:44,516 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpKLzD4U.png (graph2use=hierarchical, simple_form=True). -210809-06:30:45,952 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpHwhsvC.png (graph2use=hierarchical, simple_form=True). +220912-15:31:35,324 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpySSONS.png (graph2use=hierarchical, simple_form=True). +220912-15:31:35,738 nipype.workflow INFO: + Generated workflow graph: /tmp/tmprkwyYP.png (graph2use=hierarchical, simple_form=True). +220912-15:31:36,70 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpzLIxlt.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.graph WARNING: Empty - nipype.workflows.misc WARNING: Empty - nipype.workflows.rsfmri WARNING: Empty - nipype.workflows.rsfmri.fsl -210809-06:30:47,967 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpf6SiuB.png (graph2use=hierarchical, simple_form=True). -210809-06:30:49,488 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpWJJ6VZ.png (graph2use=hierarchical, simple_form=True). +220912-15:31:36,486 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpoya_Oe.png (graph2use=hierarchical, simple_form=True). +220912-15:31:36,878 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpyKDs03.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri WARNING: Empty - nipype.workflows.smri.ants -210809-06:30:51,339 nipype.workflow INFO: - Generated workflow graph: /tmp/tmptUv37s.png (graph2use=hierarchical, simple_form=True). -210809-06:30:53,39 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpWMFj0E.png (graph2use=hierarchical, simple_form=True). +220912-15:31:37,431 nipype.workflow INFO: + Generated workflow graph: /tmp/tmplXTje2.png (graph2use=hierarchical, simple_form=True). +220912-15:31:37,990 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpR88sdz.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.freesurfer WARNING: Empty - nipype.workflows.smri.freesurfer.autorecon3 WARNING: Empty - nipype.workflows.smri.freesurfer.ba_maps -210809-06:31:03,78 nipype.workflow INFO: - Generated workflow graph: /tmp/tmplD6k17.png (graph2use=hierarchical, simple_form=True). -210809-06:31:03,142 nipype.workflow INFO: +220912-15:31:41,847 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpVuqaPs.png (graph2use=hierarchical, simple_form=True). +220912-15:31:41,852 nipype.workflow INFO: FreeSurfer Version: 5.3 -210809-06:32:02,447 nipype.workflow INFO: - Generated workflow graph: /tmp/tmp4tLgRF.png (graph2use=hierarchical, simple_form=True). -210809-06:32:04,546 nipype.workflow INFO: - Generated workflow graph: /tmp/tmph7ASZR.png (graph2use=hierarchical, simple_form=True). +220912-15:32:06,837 nipype.workflow INFO: + Generated workflow graph: /tmp/tmppMELPf.png (graph2use=hierarchical, simple_form=True). +220912-15:32:07,483 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpY1bRrZ.png (graph2use=hierarchical, simple_form=True). FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow FREESURFER_HOME: None Warning: please set FREESURFER_HOME before running the workflow -210809-06:32:06,378 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpPdkZGX.png (graph2use=hierarchical, simple_form=True). -210809-06:32:08,450 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpU22T2I.png (graph2use=hierarchical, simple_form=True). -210809-06:32:10,197 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpih36Jh.png (graph2use=hierarchical, simple_form=True). +220912-15:32:07,952 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpcoUXXU.png (graph2use=hierarchical, simple_form=True). +220912-15:32:08,391 nipype.workflow INFO: + Generated workflow graph: /tmp/tmp5_zH3X.png (graph2use=hierarchical, simple_form=True). +220912-15:32:08,831 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpGv14lD.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.smri.niftyreg -210809-06:32:10,219 nipype.interface WARNING: +220912-15:32:08,846 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,224 nipype.interface WARNING: +220912-15:32:08,849 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,255 nipype.interface WARNING: +220912-15:32:08,866 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,264 nipype.interface WARNING: +220912-15:32:08,869 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,316 nipype.interface WARNING: +220912-15:32:08,887 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,323 nipype.interface WARNING: +220912-15:32:08,890 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,357 nipype.interface WARNING: +220912-15:32:08,908 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,363 nipype.interface WARNING: +220912-15:32:08,911 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,399 nipype.interface WARNING: +220912-15:32:08,930 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,404 nipype.interface WARNING: +220912-15:32:08,933 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,458 nipype.interface WARNING: +220912-15:32:08,952 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,471 nipype.interface WARNING: +220912-15:32:08,955 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,538 nipype.interface WARNING: +220912-15:32:08,973 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,558 nipype.interface WARNING: +220912-15:32:08,978 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,670 nipype.interface WARNING: +220912-15:32:09,10 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,686 nipype.interface WARNING: +220912-15:32:09,14 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,798 nipype.interface WARNING: +220912-15:32:09,45 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,818 nipype.interface WARNING: +220912-15:32:09,50 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,920 nipype.interface WARNING: +220912-15:32:09,81 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:10,936 nipype.interface WARNING: +220912-15:32:09,85 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:11,48 nipype.interface WARNING: +220912-15:32:09,118 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:11,72 nipype.interface WARNING: +220912-15:32:09,124 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:11,190 nipype.interface WARNING: +220912-15:32:09,160 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:11,198 nipype.interface WARNING: +220912-15:32:09,163 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:11,216 nipype.interface WARNING: +220912-15:32:09,173 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:11,224 nipype.interface WARNING: +220912-15:32:09,178 nipype.interface WARNING: version_from_command member of CommandLine was Deprecated in nipype-1.0.0 and deleted in 1.1.0 -210809-06:32:13,770 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpJBKoFi.png (graph2use=hierarchical, simple_form=True). -210809-06:32:15,651 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpyYwmo7.png (graph2use=hierarchical, simple_form=True). -210809-06:32:17,49 nipype.workflow INFO: - Generated workflow graph: /tmp/tmpFlFptR.png (graph2use=hierarchical, simple_form=True). +220912-15:32:09,983 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpk988Ya.png (graph2use=hierarchical, simple_form=True). +220912-15:32:10,399 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpsfURLg.png (graph2use=hierarchical, simple_form=True). +220912-15:32:10,810 nipype.workflow INFO: + Generated workflow graph: /tmp/tmpcdUspI.png (graph2use=hierarchical, simple_form=True). WARNING: Empty - nipype.workflows.warp 203 files written making output directory... @@ -9898,19 +9932,19 @@ warn("Unknown section %s" % key) reading sources... [ 2%] api/generated/nipype.pipeline.engine.workflows reading sources... [ 2%] api/generated/nipype.sphinxext.plot_workflow -210809-06:32:44,711 nipype.interface INFO: +220912-15:32:20,26 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate RecoBundles, LabelsBundles, DeterministicTracking. -210809-06:32:44,722 nipype.interface INFO: +220912-15:32:20,32 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will activate DKIModel, MapmriModel, DTIModel, CSAModel, CSDModel. /build/nipype-1.1.8/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed warnings.warn('cmp not installed') -210809-06:32:44,871 nipype.interface WARNING: +220912-15:32:20,113 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:33:00,813 nipype.workflow INFO: +220912-15:32:26,341 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/api/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.png (graph2use=flat, simple_form=False). -210809-06:33:05,786 nipype.workflow INFO: +220912-15:32:27,583 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/api/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.svg (graph2use=flat, simple_form=False). -210809-06:33:11,432 nipype.workflow INFO: +220912-15:32:28,885 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/api/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.pdf (graph2use=flat, simple_form=False). /usr/lib/python2.7/dist-packages/numpydoc/docscrape.py:139: UserWarning: Unknown section :mod:`nipype.sphinxext.plot_workflow` -- Workflow Plotting Extension warn("Unknown section %s" % key) @@ -10148,13 +10182,13 @@ reading sources... [ 75%] interfaces/generated/nipype.interfaces.vtkbase reading sources... [ 75%] interfaces/generated/nipype.pkg_info reading sources... [ 75%] interfaces/generated/nipype.sphinxext.plot_workflow -210809-06:33:56,368 nipype.interface WARNING: +220912-15:32:44,365 nipype.interface WARNING: Unable to import ['cfflib']; CFFConverter interface may fail to run -210809-06:34:12,356 nipype.workflow INFO: +220912-15:32:51,27 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/interfaces/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.png (graph2use=flat, simple_form=False). -210809-06:34:17,22 nipype.workflow INFO: +220912-15:32:52,457 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/interfaces/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.svg (graph2use=flat, simple_form=False). -210809-06:34:24,45 nipype.workflow INFO: +220912-15:32:53,954 nipype.workflow INFO: Generated workflow graph: /build/nipype-1.1.8/doc/_build/wf_directive/interfaces/generated/connectivity/nipype-sphinxext-plot_workflow-1_detailed.pdf (graph2use=flat, simple_form=False). reading sources... [ 75%] interfaces/generated/nipype.workflows.data reading sources... [ 76%] interfaces/generated/workflows.dmri @@ -16774,7 +16808,7 @@ monkeypatch.setenv('DISPLAY', '') utils/tests/test_misc.py::test_rgetcwd - /build/nipype-1.1.8/nipype/utils/misc.py:367: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-pbuilder1/pytest-0/test_rgetcwd0" instead. + /build/nipype-1.1.8/nipype/utils/misc.py:367: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-pbuilder2/pytest-0/test_rgetcwd0" instead. warn('Current folder does not exist, replacing with "%s" instead.' % cwd) utils/tests/test_nipype2boutiques.py::test_generate @@ -16852,7 +16886,7 @@ DeprecationWarning) -- Docs: https://docs.pytest.org/en/latest/warnings.html -====== 2763 passed, 236 skipped, 7 xfailed, 70 warnings in 639.92 seconds ====== +====== 2763 passed, 236 skipped, 7 xfailed, 70 warnings in 406.73 seconds ====== : # no executable spreadsheets find debian -iname *csv -print0 | xargs -r -0 chmod a-x Adding cdbs dependencies to debian/python-nipype-doc.substvars @@ -16941,12 +16975,14 @@ dpkg-source: info: using options from nipype-1.1.8/debian/source/options: --extend-diff-ignore=nipype/COMMIT_INFO.txt dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/24027/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/24027/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21584 and its subdirectories -I: Current time: Mon Aug 9 06:55:12 -12 2021 -I: pbuilder-time-stamp: 1628535312 +I: removing directory /srv/workspace/pbuilder/24027 and its subdirectories +I: Current time: Mon Sep 12 15:44:13 +14 2022 +I: pbuilder-time-stamp: 1662947053